tonamswish's chip-seq [21 articles] Export

Recent papers added to tonamswish's library classified by the tag chip-seq. You can also see everyone's chip-seq.

	Computation for ChIP-seq and RNA-seq studies. [My Copy] Nature methods, Vol. 6, No. 11 Suppl. (15 November 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to tool rna-seq review chip-seq bioinfo by tonamswish on 2009-11-09 18:05:33 as along with 23 people and 2 groups urgi Jporci pst epigenetics timflutre molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais molnet-macs Orengo Group Journal Picks
	ChIP-seq accurately predicts tissue-specific activity of enhancers [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 854-858. by Axel Visel, Matthew J. Blow, Zirong Li, et al.Tao Zhang, Jennifer A. Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Crystal Wright, Feng Chen, Veena Afzal, Bing Ren, Edward M. Rubin, Len A. Pennacchio posted to tool enhancer chip-seq bioinfo by tonamswish on 2009-10-27 19:20:00 as along with 23 people and 2 groups hzoltan ewilban1 samanthacooper ashkelon13 isimpson gdb dnewburger jochenG bertelsen oelemento rpatward cajunsushi WanderingAengus absterga provero cassj anphony dpollard caseybrown biomcgary xingxu idonaldson djkt RockmanLab cis-regulatory-evolution
	BayesPeak: Bayesian analysis of ChIP-seq data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 299. by Christiana Spyrou, Rory Stark, Andy Lynch, Simon Tavare posted to tool hmm chip-seq bioinfo bayesian by tonamswish on 2009-10-27 13:08:34 as along with 11 people and 4 groups Vincent_Rouilly dswan fenghezi inesdesantiago idonaldson polivares mkiyer druvus stajich humburg rschulz Bioinformatics JLab BergmanLab Mycology
	An Integrated Approach to Identifying Cis-Regulatory Modules in the Human Genome [My Copy] PLoS ONE, Vol. 4, No. 5. (12 May 2009), e5501. by Kyoung-Jae Won, Saurabh Agarwal, Li Shen, Robert Shoemaker, Bing Ren, Wei Wang posted to tool tf hmm chip-seq bioinfo by tonamswish on 2009-10-27 03:01:09 as along with 3 people and 1 group guhjy idonaldson cisevol BergmanLab
	Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1715-1721. by Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin posted to hmm chip-seq chip-chip bioinfo by tonamswish on 2009-10-27 02:15:59 as along with 12 people and 1 group jfr rdiaz fpattyn jcbarret guhjy hendrik85 inesdesantiago nklee polivares ewilban1 idonaldson humburg Journal picks
	ChIP-Seq of ER\|[alpha]\| and RNA polymerase II defines genes differentially responding to ligands [My Copy] EMBO J, Vol. 28, No. 10. (04 April 2009), pp. 1418-1428. by Willem-Jan Welboren, Marc A. van Driel, Eva M. Janssen-Megens, et al.Simon J. van Heeringen, Fred C. G. J. Sweep, Paul N. Span, Hendrik G. Stunnenberg posted to tamoxifen pol2 mcf7 era chip-seq bioinfo by tonamswish on 2009-09-20 03:48:16 as along with 1 person ewilban1
	Comparative study on ChIP-seq data: normalization and binding pattern characterization [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2334-2340. by Cenny Taslim, Jiejun Wu, Pearlly Yan, et al.Greg Singer, Jeffrey Parvin, Tim Huang, Shili Lin, Kun Huang posted to tool oht normalization mcf7 chip-seq bioinfo by tonamswish on 2009-09-20 03:44:03 as along with 8 people and 2 groups Stew stubrown inesdesantiago ewilban1 guhjy mkiyer humburg rschulz Bioinformatics - CRUK Chinnaiyan Lab
	Genomic location analysis by ChIP-Seq [My Copy] Journal of Cellular Biochemistry, Vol. 107, No. 1. (1 May 2009), pp. 11-18. by Artem Barski, Keji Zhao posted to chip-seq review by tonamswish on 2009-06-02 22:26:32 as along with 9 people Vincent_Rouilly stubrown guhjy hagechouchin443 humburg ewilban1 talponer cassj polivares
	High-resolution human core-promoter prediction with CoreBoost_HM. [My Copy] Genome research, Vol. 19, No. 2. (7 February 2009), pp. 266-275. by Xiaowo Wang, Zhenyu Xuan, Xiaoyue Zhao, Yanda Li, Michael Q. Zhang posted to tss tool promoter microrna histone_modification histone chip-seq bioinfo by tonamswish on 2009-05-28 06:23:38 as along with 6 people and 1 group guhjy megraw rpatward pengchy abizar maximilianh microRNA
	ChIP-Seq Proﬁling of Estrogen Receptor Alpha Binding Sites Using the Illumina Genome Analyzer [My Copy] Illumina Technical Note by Illumina posted to chip-seq illumina protocol by tonamswish on 2009-05-27 17:42:25 as
	Design and analysis of ChIP-seq experiments for DNA-binding proteins. [My Copy] Nature biotechnology, Vol. 26, No. 12. (16 December 2008), pp. 1351-1359. by Peter V. Kharchenko, Michael Y. Tolstorukov, Peter J. Park posted to bioinfo chip-seq protocol tool by tonamswish on 2009-05-27 16:56:46 as along with 19 people and 2 groups hzoltan stubrown guhjy gdb ewilban1 coela ekotelnikova jfr floatingpoint idonaldson inesdesantiago WanderingAengus vplagnol xwbcn fpattyn mutagenic kengg rschulz ghattem KCL & UCL Bioinformatics SIMR bioinformatics
	Technical note: Illumina Sequencing ChIP-Seq Data Analysis [My Copy] Illumina Technical Note by Illumina posted to bioinfo chip-seq protocol by tonamswish on 2009-05-27 16:30:34 as
	Computational Analysis of Ultra-high-throughput sequencing data: ChIP-Seq [My Copy] SIB graduate school course, EPFL, Lausanne (21 January 2009) by Bucher Philipp posted to bioinfo chip-seq protocol review by tonamswish on 2009-05-27 16:23:49 as
	Genome-Wide Mapping of in Vivo Protein-DNA Interactions [My Copy] Science, Vol. 316, No. 5830. (8 June 2007), pp. 1497-1502. by David S. Johnson, Ali Mortazavi, Richard M. Myers, Barbara Wold posted to bioinfo chip-seq peakfinder tool by tonamswish on 2009-05-27 16:18:16 as along with 24 people and 5 groups oannes daforerog ewilban1 aprasad jo_davies aalibes balicea andersbj JeremyZucker aswin kengg giovanni cjeans ghattem zwang epigenetics biomcgary george_g cabbagezs Jporci blobbybirdman caseybrown emptyhb dquest Bioinformatics microRNA Marcotte_Lab UH - Computational Biology Myxo group
	Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. [My Copy] Nucleic acids research, Vol. 36, No. 16. (6 September 2008), pp. 5221-5231. by R. Jothi, S. Cuddapah, A. Barski, K. Cui, K. Zhao posted to bioinfo chip-chip chip-seq tool by tonamswish on 2009-05-27 15:33:17 as along with 10 people talponer ewilban1 polivares guhjy mcm Eroslavochka inesdesantiago mdperry sebastien_vigneau idonaldson
	GeneTrack--a genomic data processing and visualization framework [My Copy] Bioinformatics, Vol. 24, No. 10. (15 May 2008), pp. 1305-1306. by Istvan Albert, Shinichiro Wachi, Cizhong Jiang, B. Franklin Pugh posted to bioinfo chip-chip chip-seq tool by tonamswish on 2009-05-27 15:31:32 as along with 6 people ewilban1 cassj zhouyu wisdom_love guhjy inesdesantiago
	An integrated software system for analyzing ChIP-chip and ChIP-seq data. [My Copy] Nature biotechnology, Vol. 26, No. 11. (02 November 2008), pp. 1293-1300. by Hongkai Ji, Hui Jiang, Wenxiu Ma, David S. Johnson, Richard M. Myers, Wing H. Wong posted to bioinfo chip-chip chip-seq tool by tonamswish on 2009-05-27 15:29:11 as along with 24 people and 3 groups hzoltan fpattyn stubrown isimpson huali ewilban1 sebastien_vigneau jfr kmdaily cassj bryankr malcook rschulz mcm behindtherabbit psique renatomilani polivares guhjy inesdesantiago pengchy kengg bais idonaldson Neuroblastoma SIMR bioinformatics BenosLab
	An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells. [My Copy] Nature structural & molecular biology (11 January 2009) by Gene W W. Yeo, Nicole G G. Coufal, Tiffany Y Y. Liang, Grace E E. Peng, Xiang-Dong D. Fu, Fred H H. Gage posted to chip-seq fox2 splicing stem tf by tonamswish on 2009-05-26 18:25:57 as along with 1 person cassj
	FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology [My Copy] Bioinformatics, Vol. 24, No. 15. (1 August 2008), pp. 1729-1730. by Anthony P. Fejes, Gordon Robertson, Mikhail Bilenky, Richard Varhol, Matthew Bainbridge, Steven J. M. Jones posted to bioinfo chip-seq findpeak tool by tonamswish on 2009-05-19 18:36:09 as along with 19 people and 2 groups hzoltan darian n00c polivares idonaldson ewilban1 humburg Thaverkamp natstreet druvus stajich cassj WanderingAengus rschulz jfr sconlan reyez guhjy vega Bioinformatics Mycology
	F-Seq: a feature density estimator for high-throughput sequence tags [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2537-2538. by Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey posted to bioinfo chip-seq by tonamswish on 2009-04-13 17:42:06 as along with 18 people and 2 groups hzoltan n00c darian idonaldson michaelbarton inesdesantiago gdb ewilban1 guhjy kmdaily cassj fhalbrit jfr rschulz polivares cthachuk zhouyu aprasad JLab BergmanLab
	Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals [My Copy] Nature, Vol. 458, No. 7235. (01 February 2009), pp. 223-227. by Mitchell Guttman, Ido Amit, Manuel Garber, et al.Courtney French, Michael F. Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W. Carey, John P. Cassady, Moran N. Cabili, Rudolf Jaenisch, Tarjei S. Mikkelsen, Tyler Jacks, Nir Hacohen, Bradley E. Bernstein, Manolis Kellis, Aviv Regev, John L. Rinn, Eric S. Lander posted to chip-seq chromatin h3k36me3 h3k4me3 lincrna by tonamswish on 2009-03-30 15:17:23 as along with 29 people and 2 groups hzoltan jwfoley rsaito greg mkiyer gdb YukaH galka8_diploma antonkratz bertelsen natstreet fenghezi TRHvidsten megraw biomcgary inesdesantiago djkt samgj dchughes admash neils absterga cisevol jm12 WanderingAengus daforerog bpcusack ericsuh mhamada Chinnaiyan Lab JLab

Note: You may cite this page as: http://www.citeulike.org/user/tonamswish/tag/chip-seq

microrna	208
review	177
bioinfo	158
cancer	149
tool	100
stem	89
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tonamswish's chip-seq [21 articles] Export

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