torfinnnome's library 64 articles Export

	SSAHA: a fast search method for large DNA databases. [My Copy] Genome research, Vol. 11, No. 10. (1 October 2001), pp. 1725-1729. by Z. Ning, A. J. Cox, J. C. Mullikin posted to software short-read mapping by torfinnnome on 2009-11-19 09:44:21 as along with 17 people stharward adthrasher mattwa jmanning2k n00c jmcq APRegier natstreet druvus treangen umit mmartin timflutre bpb j3xucite lp2 dmc
	Combining tissue transcriptomics and urine metabolomics for breast cancer biomarker identification [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3151-3157. by Hojung Nam, Bong C. Chung, Younghoon Kim, KiYoung Lee, Doheon Lee posted to metabolomics gene expression cancer biomarker by torfinnnome on 2009-11-18 12:15:59 as along with 3 people dswan brianb neils
	Next-generation gap [My Copy] Nat Meth, Vol. 6, No. 11s. (15 November 2009), pp. S2-S5. by John D. McPherson posted to sequencing comment by torfinnnome on 2009-11-17 15:08:25 as along with 8 people pst owenlancaster Vincent_Rouilly seb1 idoerg oannes74 heliopais GeeSharpMinor
	SNP detection for massively parallel whole-genome resequencing [My Copy] Genome Research, Vol. 19, No. 6. (6 June 2009), pp. 1124-1132. by Ruiqiang Li, Yingrui Li, Xiaodong Fang, et al.Huanming Yang, Jian Wang, Karsten Kristiansen, Jun Wang posted to software soap snp short-reads detection by torfinnnome on 2009-11-16 16:41:04 as along with 18 people hzoltan seb1 maren adijr greg jandot guhjy jonilaserson n00c druvus reyez sandfire jasontsai djkt sameersoi natstreet jbhiatt GeeSharpMinor
	Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling [My Copy] PLoS ONE, Vol. 4, No. 7. (28 July 2009), e6323. by Nicola Palmieri, Christian Schlötterer posted to software short-read mapping by torfinnnome on 2009-11-16 14:17:29 as along with 16 people and 3 groups hzoltan darian debasis mqbphcw3 stubrown Thaverkamp PabloMarin jasontsai ThomasDOtto heliopais guhjy cisevol n00c natstreet druvus jbhiatt Journal picks JLab BergmanLab
	BFAST: An Alignment Tool for Large Scale Genome Resequencing [My Copy] PLoS ONE, Vol. 4, No. 11. (11 November 2009), e7767. by Nils Homer, Barry Merriman, Stanley F. Nelson posted to software short-reads sequencing paired-end mapping alignment by torfinnnome on 2009-11-11 12:32:55 as along with 5 people n00c friendpine zwang druvus idonaldson
	Microdroplet-based PCR enrichment for large-scale targeted sequencing [My Copy] Nature Biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1025-1031. by Ryan Tewhey, Jason B. Warner, Masakazu Nakano, et al.Brian Libby, Martina Medkova, Patricia H. David, Steve K. Kotsopoulos, Michael L. Samuels, J. Brian Hutchison, Jonathan W. Larson, Eric J. Topol, Michael P. Weiner, Olivier Harismendy, Jeff Olson, Darren R. Link, Kelly A. Frazer posted to targeted sequencing resequencing pcr microdroplet enrichment by torfinnnome on 2009-11-09 12:33:44 as along with 2 people and 2 groups chvlyl qayub Reunions Biblio Spectro-IAB Journal picks
	An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer [My Copy] Nat Biotech, Vol. 27, No. 11. (01 November 2009), pp. 1005-1011. by Xiao-Song Wang, John R. Prensner, Guoan Chen, et al.Qi Cao, Bo Han, Saravana M. Dhanasekaran, Rakesh Ponnala, Xuhong Cao, Sooryanarayana Varambally, Dafydd G. Thomas, Thomas J. Giordano, David G. Beer, Nallasivam Palanisamy, Maureen A. Sartor, Gilbert S. Omenn, Arul M. Chinnaiyan posted to transcriptome sequencing paired-end gene fusion cancer by torfinnnome on 2009-11-09 12:26:59 as along with 3 people and 1 group qayub chvlyl frohike Journal picks
	MALDI Profiling of Human Lung Cancer Subtypes [My Copy] PLoS ONE, Vol. 4, No. 11. (5 November 2009), e7731. by Angelo Gámez-Pozo, Iker Sánchez-Navarro, Manuel Nistal, et al.Enrique Calvo, Rosario Madero, Esther Díaz, Emilio Camafeita, Javier de Castro, Juan A. López, Manuel González-Barón, Enrique Espinosa, Juan Fresno Vara posted to proteomics profiling ms maldi cancer biomarker by torfinnnome on 2009-11-06 08:02:25 as along with 1 person frohike
	How to map billions of short reads onto genomes [My Copy] Nature Biotechnology, Vol. 27, No. 5. (01 May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted to software short-read sequencing mapping by torfinnnome on 2009-11-05 12:21:58 as along with 28 people and 5 groups cthachuk hzoltan tonamswish heliopais giovenko jfr daforerog jonilaserson mkiyer Annab darian polivares ghattem kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Stew inesdesantiago idonaldson neils Bioinformatics Chinnaiyan Lab BergmanLab SIMR bioinformatics Bioinformatics - CRUK
	A unique, consistent identifier for alternatively spliced transcript variants. [My Copy] PloS one, Vol. 4, No. 10. (28 October 2009), e7631. by Alberto Riva, Graziano Pesole posted to splicing nomenclature identifier alternative by torfinnnome on 2009-11-03 14:34:29 as along with 1 person booker
	Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2865-2871. by Kai Ye, Marcel H. Schulz, Quan Long, Rolf Apweiler, Zemin Ning posted to software short-read paired-end indels deletions by torfinnnome on 2009-11-03 14:18:02 as along with 5 people dakelley n00c natstreet druvus vplagnol
	SOAP2: an improved ultrafast tool for short read alignment [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah Lam, Siu-Ming Yiu, Karsten Kristiansen, Jun Wang posted to software short-reads sequencing bwa alignment by torfinnnome on 2009-10-30 11:12:08 as along with 26 people and 6 groups hzoltan agbiotec natstreet cthachuk jforment GustavoLacerda adijr bozdagd stubrown polivares guhjy ollieredfernwork operon cassj adamjamesreid Stew jamselem dswan idonaldson TRHvidsten humburg djkt farhat n00c jmeppley druvus Bioinformatics Core Service BergmanLab Orengo Group Journal Picks Bioinformatics - CRUK Bioinformatics Journal picks
	ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2882-2889. by Gerald Quon, Quaid Morris posted to sequencing python predict gene expression cancer algorithm by torfinnnome on 2009-10-28 15:01:57 as along with 4 people ptrobajo brianb nuin bgordski
	De novo transcriptome assembly with ABySS [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2872-2877. by Inanc Birol, Shaun D. Jackman, Cydney B. Nielsen, et al.Jenny Q. Qian, Richard Varhol, Greg Stazyk, Ryan D. Morin, Yongjun Zhao, Martin Hirst, Jacqueline E. Schein, Doug E. Horsman, Joseph M. Connors, Randy D. Gascoyne, Marco A. Marra, Steven J. M. Jones posted to software short-read sequencing novo de assembly abyss by torfinnnome on 2009-10-26 07:45:22 as along with 9 people dswan dakelley TRHvidsten rtogawa ramonvidal stubrown darshan GustavoLacerda druvus
	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing [My Copy] Nature Genetics, Vol. 40, No. 12. (02 November 2008), pp. 1413-1415. by Qun Pan, Ofer Shai, Leo J. Lee, Brendan J. Frey, Benjamin J. Blencowe posted to transcriptome splicing sequencing illumina alternative by torfinnnome on 2009-10-22 15:16:38 as along with 20 people hzoltan n00c ericrpaquet jonilaserson ThomasDOtto giovanni frohike fenghezi jfr zxmon21 jmcq poschm wimufi xingxu inesdesantiago jbhiatt rschulz djkt dchughes GeeSharpMinor
	Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts. [My Copy] Genome biology, Vol. 10, No. 10. (16 October 2009), R115. by Joshua Z. Levin, Michael F. Berger, Xian Adiconis, et al.Peter Rogov, Alexandre Melnikov, Timothy Fennell, Chad Nusbaum, Levi A. Garraway, Andreas Gnirke posted to transcriptome targeted sequencing rna-seq gene fusion cancer by torfinnnome on 2009-10-22 07:42:11 as along with 2 people and 1 group pst jwfoley Journal picks
	Slider - Maximum use of probability information for alignment of short sequence reads and SNP detection [My Copy] Bioinformatics, Vol. 25, No. 1. (30 October 2008), pp. btn565-13. by Nawar Malhis, Yaron Butterfield, Martin Ester, Steven J. M. Jones posted to software snp short-read sequencing probability mapping illumina alignment by torfinnnome on 2009-10-19 16:06:43 as along with 8 people darian seb1 orzenil jsatkosk n00c mdimon druvus jmeppley
	MapView: visualization of short reads alignment on a desktop computer. [My Copy] Bioinformatics (Oxford, England) (15 April 2009) by Hua Bao, Hui Guo, Jinwei Wang, Renchao Zhou, Xuemei Lu, Suhua Shi posted to visualisation short-reads sequencing assembly alignment by torfinnnome on 2009-10-19 14:12:18 as along with 4 people jmeppley robsyme neils svenrahmann
	Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data. [My Copy] Bioinformatics (Oxford, England) (6 October 2009), btp579. by Jacob F. Degner, John C. Marioni, Athma A. Pai, et al.Joseph K. Pickrell, Everlyne Nkadori, Yoav Gilad, Jonathan K. Pritchard posted to snp short-read masking mapping by torfinnnome on 2009-10-15 15:49:44 as along with 2 people papamicd heliopais
	STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 332. by Daniel Jupiter, Hailin Chen, Vincent VanBuren posted to web regulatory networks microarray gene expression by torfinnnome on 2009-10-15 10:15:09 as along with 5 people and 1 group sillitoe rcr1991 trogdor rdiaz druvus Orengo Group Journal Picks
	BASE - 2nd generation software for microarray data management and analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 330. by Johan V. Christersson, Nicklas Nordborg, Martin Svensson, Jari Hakkinen posted to repository microarray gpl by torfinnnome on 2009-10-12 17:58:37 as along with 5 people and 1 group dswan sillitoe heliopais daforerog druvus Orengo Group Journal Picks
	The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2730-2731. by John W. Nicol, Gregg A. Helt, Steven G. Blanchard, Archana Raja, Ann E. Loraine posted to sequencing microarray java genome browser annotation by torfinnnome on 2009-10-09 10:34:13 as along with 10 people and 2 groups jforment dokky inesdesantiago daforerog idonaldson pkonings sebastien_vigneau guhjy natstreet druvus Bioinformatics Core Service ronbun_2009au
	Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution. [My Copy] Nature, Vol. 461, No. 7265. (8 October 2009), pp. 809-813. by Sohrab P. Shah, Ryan D. Morin, Jaswinder Khattra, et al.Leah Prentice, Trevor Pugh, Angela Burleigh, Allen Delaney, Karen Gelmon, Ryan Guliany, Janine Senz, Christian Steidl, Robert A. Holt, Steven Jones, Mark Sun, Gillian Leung, Richard Moore, Tesa Severson, Greg A. Taylor, Andrew E. Teschendorff, Kane Tse, Gulisa Turashvili, Richard Varhol, René L. Warren, Peter Watson, Yongjun Zhao, Carlos Caldas, David Huntsman, Martin Hirst, Marco A. Marra, Samuel Aparicio posted to transcriptome snp illumina genome evolution cancer breast by torfinnnome on 2009-10-08 08:39:57 as along with 13 people and 2 groups misonneh pst jwfoley stubrown chvlyl giovenko frohike brianb Zephyrus jsuchit mkiyer merpublic djkt Chinnaiyan Lab Journal picks
	High resolution analysis of the human transcriptome: detection of extensive alternative splicing independent of transcriptional activity [My Copy] BMC Genetics, Vol. 10, No. 1. (05 October 2009), 63. by Weiyin Zhou, Margaret Calciano, Heather Jordan, et al.Michael Brenner, Seth Johnson, Darong Wu, Lin Lei, Diego Pallares, Pascale Beurdeley, Fabien Rouet, Pritmohinder Gill, Laurent Bracco, Cyril Soucaille, Richard Einstein posted to transcriptome splicing microarray gwsa expression alternative by torfinnnome on 2009-10-06 10:12:48 as along with 1 person GeeSharpMinor
	Next-generation tag sequencing for cancer gene expression profiling [My Copy] Genome Research, Vol. 19, No. 10. (10 October 2009), pp. 1825-1835. by A. Sorana Morrissy, Ryan D. Morin, Allen Delaney, et al.Thomas Zeng, Helen McDonald, Steven Jones, Yongjun Zhao, Martin Hirst, Marco A. Marra posted to tag sequencing gene expression cancer by torfinnnome on 2009-10-02 08:22:11 as along with 4 people and 1 group hzoltan Stew guhjy fpattyn Bioinformatics - CRUK
	BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing [My Copy] Genome Research, Vol. 19, No. 10. (6 October 2009), pp. 1884-1895. by Wei-Chun Kao, Kristian Stevens, Yun S. Song posted to short-read pipeline illumina base-calling algorithm by torfinnnome on 2009-10-02 07:53:50 as along with 13 people and 2 groups heliopais dakelley lp2 megraw rdiaz djkt n00c farhat druvus polivares stajich fpattyn jbhiatt BergmanLab Mycology
	galign: A Tool for Rapid Genome Polymorphism Discovery [My Copy] PLoS ONE, Vol. 4, No. 9. (25 September 2009), e7188. by Shai Shaham posted to snp short-read illumina discovery annotation by torfinnnome on 2009-09-28 09:29:22 as along with 7 people and 1 group maren scmelton natstreet Benedikt_Zimmermann n00c druvus stajich Mycology
	Upcoming challenges for multiple sequence alignment methods in the high-throughput era [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2455-2465. by Carsten Kemena, Cedric Notredame posted to sequence review alignment by torfinnnome on 2009-09-28 08:48:28 as along with 10 people and 2 groups fstrozzi manduca djkt rdiaz sjcockell walshtp nuin natstreet druvus ollieredfernwork Journal picks Orengo Group Journal Picks
	ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 19. (1 October 2009), pp. 2607-2608. by Martin Morgan, Simon Anders, Michael Lawrence, Patrick Aboyoun, Hervé Pagès, Robert Gentleman posted to statistics short-read r quality bioconductor by torfinnnome on 2009-09-28 07:55:49 as along with 13 people and 1 group darian jforment fstrozzi rschulz djkt jmeppley dswan walshtp jamesmorris joaocarrico natstreet n00c druvus Bioinformatics Core Service
	Targeted capture and massively parallel sequencing of 12 human exomes [My Copy] Nature, Vol. 461, No. 7261. (16 August 2009), pp. 272-276. by Sarah B. Ng, Emily H. Turner, Peggy D. Robertson, et al.Steven D. Flygare, Abigail W. Bigham, Choli Lee, Tristan Shaffer, Michelle Wong, Arindam Bhattacharjee, Evan E. Eichler, Michael Bamshad, Deborah A. Nickerson, Jay Shendure posted to targeted sequencing exome capture by torfinnnome on 2009-09-24 19:34:54 as along with 23 people and 1 group seb1 hzoltan liqbbi chvlyl ongenetics psique fenghezi n00c dswan jmanning2k GeeSharpMinor pkonings neils djkt daforerog PabloMarin stubrown danmaclean xingxu vplagnol druvus jandot frohike Journal picks
	Simultaneous alignment of short reads against multiple genomes [My Copy] Genome Biology, Vol. 10, No. 9. (17 September 2009), R98. by Korbinian Schneeberger, Jorg Hagmann, Stephan Ossowski, et al.Norman Warthmann, Sandra Gesing, Oliver Kohlbacher, Detlef Weigel posted to short-read resequencing reference assembly by torfinnnome on 2009-09-24 07:13:47 as along with 10 people darian maren megraw djkt fstrozzi jamselem justinhjohnson reyez natstreet druvus
	JBrowse: A next-generation genome browser [My Copy] Genome Research, Vol. 19, No. 9. (1 September 2009), pp. 1630-1638. by Mitchell E. Skinner, Andrew V. Uzilov, Lincoln D. Stein, Christopher J. Mungall, Ian H. Holmes posted to sequencing javascript genome browser by torfinnnome on 2009-09-17 15:20:31 as along with 28 people and 2 groups hzoltan darian mkiyer daforerog n00c fenghezi djkt WXuan Zephyrus idonaldson pkonings inesdesantiago jcbarret jamselem aprasad urgi polivares cassj guhjy giovanni druvus natstreet fpattyn cisevol danmaclean timhubbard operon neils BergmanLab Journal picks
	Combinatorics and next-generation sequencing [My Copy] Nature Biotechnology, Vol. 27, No. 9. (01 September 2009), pp. 826-827. by Nick Patterson, Stacey Gabriel posted to sequencing pooling combinatorics by torfinnnome on 2009-09-17 08:02:24 as along with 7 people and 1 group ethanmj ptrobajo n00c orzenil inesdesantiago qayub rmk Journal picks
	TagDust--a program to eliminate artifacts from next generation sequencing data [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2839-2840. by Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub posted to sequencing illumina filtering artifacts by torfinnnome on 2009-09-16 20:59:57 as along with 19 people and 1 group hzoltan chvlyl operon kshameer djkt rtogawa seb1 idonaldson nuin debasis jgill GeeSharpMinor sotacam walshtp heliopais jandot n00c rschulz druvus Journal picks
	A first principles approach to differential expression in microarray data analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 292. by Robert Rubin posted to microarray expression differential anova by torfinnnome on 2009-09-16 19:26:04 as along with 5 people dswan brianb neils renatomilani rdiaz
	Distinct High-Profile Methylated Genes in Colorectal Cancer [My Copy] PLoS ONE, Vol. 4, No. 9. (11 September 2009), e7012. by Pooneh Mokarram, Krishan Kumar, Hassan Brim, et al.Fakhraddin Naghibalhossaini, Mehdi Saberi-firoozi, Mehdi Nouraie, Robert Green, Ed Lee, Duane T. Smoot, Hassan Ashktorab posted to promoter methylation colorectal cancer biomarker by torfinnnome on 2009-09-16 14:03:22 as
	Sensitive and accurate detection of copy number variants using read depth of coverage [My Copy] Genome Research, Vol. 19, No. 9. (5 September 2009), pp. 1586-1592. by Seungtai Yoon, Zhenyu Xuan, Vladimir Makarov, Kenny Ye, Jonathan Sebat posted to snp sequencing inversions indels coverage cnv by torfinnnome on 2009-09-16 13:29:54 as along with 7 people woodson8 scmelton dakelley n00c rdiaz jbhiatt pkonings
	Analysis of SNPs and Haplotypes in Vitamin D Pathway Genes and Renal Cancer Risk [My Copy] PLoS ONE, Vol. 4, No. 9. (15 September 2009), e7013. by Sara Karami, Paul Brennan, Philip S. Rosenberg, et al.Marie Navratilova, Dana Mates, David Zaridze, Vladimir Janout, Helena Kollarova, Vladimir Bencko, Vsevolod Matveev, Neonila Szeszenia-Dabrowska, Ivana Holcatova, Meredith Yeager, Stephen Chanock, Idan Menashe, Nathaniel Rothman, Wong-Ho Chow, Paolo Boffetta, Lee E. Moore posted to snp risk renal haplotype cancer by torfinnnome on 2009-09-16 10:53:14 as
	Microarray-based multicycle-enrichment of genomic subsets for targeted next-generation sequencing [My Copy] Genome Research, Vol. 19, No. 9. (28 September 2009), pp. 1616-1621. by Daniel Summerer, Haiguo Wu, Bettina Haase, et al.Yang Cheng, Nadine Schracke, Cord F. StÃ¤hler, Mark S. Chee, Peer F. StÃ¤hler, Markus Beier posted to sequencing microarray illumina enrichment by torfinnnome on 2009-09-16 10:35:16 as along with 4 people xingxu guhjy jbhiatt natstreet
	Fast mapping of short sequences with mismatches, insertions and deletions using index structures. [My Copy] PLoS computational biology, Vol. 5, No. 9. (11 September 2009), e1000502. by Steve Hoffmann, Christian Otto, Stefan Kurtz, et al.Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller posted to sequencing mapping algorithm by torfinnnome on 2009-09-15 12:46:45 as along with 19 people and 4 groups cthachuk hzoltan darian nuin fenghezi behindtherabbit jandot walshtp stubrown dswan polivares orzenil natstreet djkt jmcq n00c heliopais ppgardne druvus Bioinformatics BergmanLab iSEEM Journal picks
	Assisted assembly: how to improve a de novo genome assembly by using related species [My Copy] Genome Biology, Vol. 10, No. 8. (2009), R88. by Sante Gnerre, Eric Lander, Kerstin L. Toh, David Jaffe posted to sequencing comparative assembly by torfinnnome on 2009-09-10 07:56:59 as along with 17 people and 2 groups operon fstrozzi kiekyon dakelley jamselem err129 djkt darian APRegier thegoose danmaclean stajich natstreet neils druvus GustavoLacerda avilella Mycology Journal picks
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted to sequencing illumina duplication cnv 454 by torfinnnome on 2009-09-02 12:49:31 as along with 30 people and 1 group ongenetics chvlyl leemachado daed gbenson n00c bozdagd dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab djkt nuin xingxu jamesmorris rdiaz brant jandot pkonings danmaclean daforerog frohike rschulz gangcai Journal picks
	Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome [My Copy] Science, Vol. 318, No. 5849. (19 October 2007), pp. 420-426. by Jan O. Korbel, Alexander E. Urban, Jason P. Affourtit, et al.Brian Godwin, Fabian Grubert, Jan F. Simons, Philip M. Kim, Dean Palejev, Nicholas J. Carriero, Lei Du, Bruce E. Taillon, Zhoutao Chen, Andrea Tanzer, A. C. Eugenia Saunders, Jianxiang Chi, Fengtang Yang, Nigel P. Carter, Matthew E. Hurles, Sherman M. Weissman, Timothy T. Harkins, Mark B. Gerstein, Michael Egholm, Michael Snyder posted to resequencing rearrangements paired-end mapping by torfinnnome on 2009-08-21 09:51:13 as along with 22 people and 2 groups jandot n00c jonilaserson jrvalcourt APRegier jessopher hpaces Zephyrus pkonings orzenil stuetz matthewsuderman dpollard dchughes AaronDarling rdiaz giovanni jlangdon annacarina07 Neeperando jfr caseybrown Journal picks EisenLab
	GR-Aligner: an algorithm for aligning pairwise genomic sequences containing rearrangement events [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2188-2193. by Te-Chin Chu, Tsunglin Liu, D. T. Lee, Greg C. Lee, Arthur C. Shih posted to sequencing rearrangements breakpoints alignment by torfinnnome on 2009-08-20 10:52:29 as along with 2 people nlapalu jmeppley
	SHREC: a short-read error correction method [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2157-2163. by Jan Schroder, Heiko Schroder, Simon J. Puglisi, Ranjan Sinha, Bertil Schmidt posted to short-read sequencing java filtering by torfinnnome on 2009-08-20 10:49:56 as along with 12 people and 1 group adthrasher dakelley skembel thegoose katholt sotacam djkt rtogawa natstreet druvus n00c jmeppley Journal picks
	Swift: primary data analysis for the Illumina Solexa sequencing platform [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2194-2199. by Nava Whiteford, Tom Skelly, Christina Curtis, et al.Matt E. Ritchie, Andrea Lohr, Alexander W. Zaranek, Irina Abnizova, Clive Brown posted to sequencing pipeline illumina by torfinnnome on 2009-08-17 10:29:14 as along with 21 people and 4 groups heliopais hzoltan dakelley sotacam lh49 djkt rtogawa cassj dswan rschulz natstreet druvus jasontsai jmeppley ghattem nuin polivares n00c aprasad niallhaslam idoerg Bioinformatics BergmanLab SIMR bioinformatics Journal picks
	R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 19. (1 October 2009), pp. 2621-2623. by Matthew E. Ritchie, Benilton S. Carvalho, Kurt N. Hetrick, Simon Tavaré, Rafael A. Irizarry posted to snp r illumina genotyping bioconductor beadchip by torfinnnome on 2009-08-16 09:28:03 as along with 7 people carolep jsatkosk daforerog djkt shikin dswan rdiaz
	Characterization of a QTL region affecting clinical mastitis and protein yield on BTA6 [My Copy] Animal Genetics, Vol. 9999, No. 9999. (2009) by H. Nilsen, H. G. Olsen, B. Hayes, et al.T. Nome, E. Sehested, M. Svendsen, T. H. E. Meuwissen, S. Lien posted to qtl mastitis by torfinnnome on 2009-08-15 20:18:27 as
	Casein haplotypes and their association with milk production traits in Norwegian Red cattle [My Copy] Genetics Selection Evolution, Vol. 41, No. 1. (2009), 24. by Heidi Nilsen, Hanne Olsen, Ben Hayes, et al.Erling Sehested, Morten Svendsen, Torfinn Nome, Theo Meuwissen, Sigbjorn Lien posted to qtl casein by torfinnnome on 2009-08-15 20:17:12 as

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sequencing	27
short-read	13
illumina	11
cancer	10
mapping	9
software	9
snp	8
alignment	7
expression	6
gene	6
microarray	6
transcriptome	5
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biomarker	4
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resequencing	4
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annotation	2
bioconductor	2
browser	2
cnv	2
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fusion	2
indels	2
java	2
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proteomics	2
qtl	2
r	2
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454	1
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anova	1
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base-calling	1
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biology	1
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capture	1
casein	1
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combinatorics	1
comment	1
comparative	1
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de	1
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detection	1
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exon	1
genotyping	1
gpl	1
gwsa	1
haplotype	1
identifier	1
inversions	1
javascript	1
lung	1
maldi	1
masking	1
mastitis	1
metabolomics	1
methylation	1
microdroplet	1
ms	1
networks	1
nomenclature	1
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