torfinnnome's sequencing [28 articles] Export

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	Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing [My Copy] Briefings in bioinformatics In Brief Bioinform (27 October 2009), bbp046. by David S. Horner, Giulio Pavesi, Tiziana Castrignano, et al.Paolo D. De Meo, Sabino Liuni, Michael Sammeth, Ernesto Picardi, Graziano Pesole posted to sequencing review genomics epigenomics bioinformatics by torfinnnome on 2009-11-27 13:25:24 as along with 13 people and 1 group guhjy qm greg dullhunk michaelbarton heliopais elipapa burak operon wilbur kshameer renatomilani druvus Journal picks
	Next-generation gap [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S2-S5. by John D. McPherson posted to sequencing comment by torfinnnome on 2009-11-17 15:08:25 as along with 9 people n00c pst owenlancaster Vincent_Rouilly seb1 idoerg oannes74 heliopais GeeSharpMinor
	BFAST: An Alignment Tool for Large Scale Genome Resequencing [My Copy] PloS one In PLoS ONE, Vol. 4, No. 11. (11 November 2009), e7767. by Nils Homer, Barry Merriman, Stanley F. Nelson posted to software short-reads sequencing paired-end mapping alignment by torfinnnome on 2009-11-11 12:32:55 as along with 9 people darian MarkFiers gdb oannes n00c friendpine zwang druvus idonaldson
	Microdroplet-based PCR enrichment for large-scale targeted sequencing [My Copy] Nature Biotechnology In Nat Biotech, Vol. 27, No. 11. (01 November 2009), pp. 1025-1031. by Ryan Tewhey, Jason B. Warner, Masakazu Nakano, et al.Brian Libby, Martina Medkova, Patricia H. David, Steve K. Kotsopoulos, Michael L. Samuels, J. Brian Hutchison, Jonathan W. Larson, Eric J. Topol, Michael P. Weiner, Olivier Harismendy, Jeff Olson, Darren R. Link, Kelly A. Frazer posted to targeted sequencing resequencing pcr microdroplet enrichment by torfinnnome on 2009-11-09 12:33:44 as along with 3 people and 2 groups n00c chvlyl qayub Reunions Biblio Spectro-IAB Journal picks
	An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer [My Copy] Nature Biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1005-1011. by Xiao-Song Wang, John R. Prensner, Guoan Chen, et al.Qi Cao, Bo Han, Saravana M. Dhanasekaran, Rakesh Ponnala, Xuhong Cao, Sooryanarayana Varambally, Dafydd G. Thomas, Thomas J. Giordano, David G. Beer, Nallasivam Palanisamy, Maureen A. Sartor, Gilbert S. Omenn, Arul M. Chinnaiyan posted to transcriptome sequencing paired-end gene fusion cancer by torfinnnome on 2009-11-09 12:26:59 as along with 4 people and 1 group burak qayub chvlyl frohike Journal picks
	How to map billions of short reads onto genomes [My Copy] Nature Biotechnology, Vol. 27, No. 5. (01 May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted to software short-read sequencing mapping by torfinnnome on 2009-11-05 12:21:58 as along with 30 people and 5 groups agbiotec burak cthachuk hzoltan tonamswish heliopais giovenko jfr daforerog jonilaserson mkiyer Annab darian polivares ghattem kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Stew inesdesantiago idonaldson neils Bioinformatics Chinnaiyan Lab BergmanLab SIMR bioinformatics Bioinformatics - CRUK
	SOAP2: an improved ultrafast tool for short read alignment [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah Lam, Siu-Ming Yiu, Karsten Kristiansen, Jun Wang posted to software short-reads sequencing bwa alignment by torfinnnome on 2009-10-30 11:12:08 as along with 27 people and 6 groups nuin hzoltan agbiotec natstreet cthachuk jforment GustavoLacerda adijr bozdagd stubrown polivares guhjy ollieredfernwork operon cassj adamjamesreid Stew jamselem dswan idonaldson TRHvidsten humburg djkt farhat n00c jmeppley druvus Bioinformatics Core Service BergmanLab Orengo Group Journal Picks Bioinformatics - CRUK Bioinformatics Journal picks
	ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2882-2889. by Gerald Quon, Quaid Morris posted to sequencing python predict gene expression cancer algorithm by torfinnnome on 2009-10-28 15:01:57 as along with 4 people ptrobajo brianb nuin bgordski
	De novo transcriptome assembly with ABySS [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2872-2877. by Inanc Birol, Shaun D. Jackman, Cydney B. Nielsen, et al.Jenny Q. Qian, Richard Varhol, Greg Stazyk, Ryan D. Morin, Yongjun Zhao, Martin Hirst, Jacqueline E. Schein, Doug E. Horsman, Joseph M. Connors, Randy D. Gascoyne, Marco A. Marra, Steven J. M. Jones posted to software short-read sequencing novo de assembly abyss by torfinnnome on 2009-10-26 07:45:22 as along with 10 people n00c dswan dakelley TRHvidsten rtogawa ramonvidal stubrown darshan GustavoLacerda druvus
	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing [My Copy] Nature Genetics, Vol. 40, No. 12. (02 November 2008), pp. 1413-1415. by Qun Pan, Ofer Shai, Leo J. Lee, Brendan J. Frey, Benjamin J. Blencowe posted to transcriptome splicing sequencing illumina alternative by torfinnnome on 2009-10-22 15:16:38 as along with 21 people ongenetics hzoltan n00c ericrpaquet jonilaserson ThomasDOtto giovanni frohike fenghezi jfr zxmon21 jmcq poschm wimufi xingxu inesdesantiago jbhiatt rschulz djkt dchughes GeeSharpMinor
	Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts. [My Copy] Genome biology, Vol. 10, No. 10. (16 October 2009), R115. by Joshua Z. Levin, Michael F. Berger, Xian Adiconis, et al.Peter Rogov, Alexandre Melnikov, Timothy Fennell, Chad Nusbaum, Levi A. Garraway, Andreas Gnirke posted to transcriptome targeted sequencing rna-seq gene fusion cancer by torfinnnome on 2009-10-22 07:42:11 as along with 2 people and 1 group pst jwfoley Journal picks
	Slider--maximum use of probability information for alignment of short sequence reads and SNP detection [My Copy] Bioinformatics, Vol. 25, No. 1. (1 January 2009), pp. 6-13. by Nawar Malhis, Yaron S. N. Butterfield, Martin Ester, Steven J. M. Jones posted to software snp short-read sequencing probability mapping illumina alignment by torfinnnome on 2009-10-19 16:06:43 as along with 9 people Julien_Fayolle darian seb1 orzenil jsatkosk n00c mdimon druvus jmeppley
	MapView: visualization of short reads alignment on a desktop computer. [My Copy] Bioinformatics (Oxford, England) (15 April 2009) by Hua Bao, Hui Guo, Jinwei Wang, Renchao Zhou, Xuemei Lu, Suhua Shi posted to visualisation short-reads sequencing assembly alignment by torfinnnome on 2009-10-19 14:12:18 as along with 4 people jmeppley robsyme neils svenrahmann
	The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2730-2731. by John W. Nicol, Gregg A. Helt, Steven G. Blanchard, Archana Raja, Ann E. Loraine posted to sequencing microarray java genome browser annotation by torfinnnome on 2009-10-09 10:34:13 as along with 11 people and 2 groups n00c jforment dokky inesdesantiago daforerog idonaldson pkonings sebastien_vigneau guhjy natstreet druvus Bioinformatics Core Service ronbun_2009au
	Next-generation tag sequencing for cancer gene expression profiling [My Copy] Genome Research, Vol. 19, No. 10. (10 October 2009), pp. 1825-1835. by A. Sorana Morrissy, Ryan D. Morin, Allen Delaney, et al.Thomas Zeng, Helen McDonald, Steven Jones, Yongjun Zhao, Martin Hirst, Marco A. Marra posted to tag sequencing gene expression cancer by torfinnnome on 2009-10-02 08:22:11 as along with 4 people and 1 group hzoltan Stew guhjy fpattyn Bioinformatics - CRUK
	Targeted capture and massively parallel sequencing of 12 human exomes. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 272-276. by Sarah B. Ng, Emily H. Turner, Peggy D. Robertson, et al.Steven D. Flygare, Abigail W. Bigham, Choli Lee, Tristan Shaffer, Michelle Wong, Arindam Bhattacharjee, Evan E. Eichler, Michael Bamshad, Deborah A. Nickerson, Jay Shendure posted to targeted sequencing exome capture by torfinnnome on 2009-09-24 19:34:54 as along with 23 people and 1 group seb1 hzoltan liqbbi chvlyl ongenetics psique fenghezi n00c dswan jmanning2k GeeSharpMinor pkonings neils djkt daforerog PabloMarin stubrown danmaclean xingxu vplagnol druvus jandot frohike Journal picks
	JBrowse: a next-generation genome browser. [My Copy] Genome research, Vol. 19, No. 9. (1 September 2009), pp. 1630-1638. by Mitchell E. Skinner, Andrew V. Uzilov, Lincoln D. Stein, Christopher J. Mungall, Ian H. Holmes posted to sequencing javascript genome browser by torfinnnome on 2009-09-17 15:20:31 as along with 30 people and 2 groups ongenetics dullhunk hzoltan darian mkiyer daforerog n00c fenghezi djkt WXuan Zephyrus idonaldson pkonings inesdesantiago jcbarret jamselem aprasad urgi polivares cassj guhjy giovanni druvus natstreet fpattyn cisevol danmaclean timhubbard operon neils BergmanLab Journal picks
	Combinatorics and next-generation sequencing [My Copy] Nature Biotechnology, Vol. 27, No. 9. (01 September 2009), pp. 826-827. by Nick Patterson, Stacey Gabriel posted to sequencing pooling combinatorics by torfinnnome on 2009-09-17 08:02:24 as along with 8 people and 1 group darian ethanmj ptrobajo n00c orzenil inesdesantiago qayub rmk Journal picks
	TagDust--a program to eliminate artifacts from next generation sequencing data [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2839-2840. by Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub posted to sequencing illumina filtering artifacts by torfinnnome on 2009-09-16 20:59:57 as along with 21 people and 1 group darian orzenil hzoltan chvlyl operon kshameer djkt rtogawa seb1 idonaldson nuin debasis jgill GeeSharpMinor sotacam walshtp heliopais jandot n00c rschulz druvus Journal picks
	Sensitive and accurate detection of copy number variants using read depth of coverage [My Copy] Genome Research, Vol. 19, No. 9. (5 September 2009), pp. 1586-1592. by Seungtai Yoon, Zhenyu Xuan, Vladimir Makarov, Kenny Ye, Jonathan Sebat posted to snp sequencing inversions indels coverage cnv by torfinnnome on 2009-09-16 13:29:54 as along with 7 people woodson8 scmelton dakelley n00c rdiaz jbhiatt pkonings
	Microarray-based multicycle-enrichment of genomic subsets for targeted next-generation sequencing [My Copy] Genome Research In Genome Research, Vol. 19, No. 9. (28 September 2009), pp. 1616-1621. by Daniel Summerer, Haiguo Wu, Bettina Haase, et al.Yang Cheng, Nadine Schracke, Cord F. StÃ¤hler, Mark S. Chee, Peer F. StÃ¤hler, Markus Beier posted to sequencing microarray illumina enrichment by torfinnnome on 2009-09-16 10:35:16 as along with 5 people n00c xingxu guhjy jbhiatt natstreet
	Fast mapping of short sequences with mismatches, insertions and deletions using index structures. [My Copy] PLoS computational biology, Vol. 5, No. 9. (11 September 2009), e1000502. by Steve Hoffmann, Christian Otto, Stefan Kurtz, et al.Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller posted to sequencing mapping algorithm by torfinnnome on 2009-09-15 12:46:45 as along with 19 people and 4 groups cthachuk hzoltan darian nuin fenghezi behindtherabbit jandot walshtp stubrown dswan polivares orzenil natstreet djkt jmcq n00c heliopais ppgardne druvus Bioinformatics BergmanLab iSEEM Journal picks
	Assisted assembly: how to improve a de novo genome assembly by using related species [My Copy] Genome Biology, Vol. 10, No. 8. (2009), R88. by Sante Gnerre, Eric Lander, Kerstin L. Toh, David Jaffe posted to sequencing comparative assembly by torfinnnome on 2009-09-10 07:56:59 as along with 20 people and 2 groups n00c davidmam klo operon fstrozzi kiekyon dakelley jamselem err129 djkt darian APRegier thegoose danmaclean stajich natstreet neils druvus GustavoLacerda avilella Mycology Journal picks
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted to sequencing illumina duplication cnv 454 by torfinnnome on 2009-09-02 12:49:31 as along with 30 people and 1 group ongenetics chvlyl leemachado daed gbenson n00c bozdagd dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab djkt nuin xingxu jamesmorris rdiaz brant jandot pkonings danmaclean daforerog frohike rschulz gangcai Journal picks
	GR-Aligner: an algorithm for aligning pairwise genomic sequences containing rearrangement events [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2188-2193. by Te-Chin Chu, Tsunglin Liu, D. T. Lee, Greg C. Lee, Arthur C. Shih posted to sequencing rearrangements breakpoints alignment by torfinnnome on 2009-08-20 10:52:29 as along with 3 people n00c nlapalu jmeppley
	SHREC: a short-read error correction method [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2157-2163. by Jan Schroder, Heiko Schroder, Simon J. Puglisi, Ranjan Sinha, Bertil Schmidt posted to short-read sequencing java filtering by torfinnnome on 2009-08-20 10:49:56 as along with 13 people and 1 group heliopais adthrasher dakelley skembel thegoose katholt sotacam djkt rtogawa natstreet druvus n00c jmeppley Journal picks
	Swift: primary data analysis for the Illumina Solexa sequencing platform [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2194-2199. by Nava Whiteford, Tom Skelly, Christina Curtis, et al.Matt E. Ritchie, Andrea Lohr, Alexander W. Zaranek, Irina Abnizova, Clive Brown posted to sequencing pipeline illumina by torfinnnome on 2009-08-17 10:29:14 as along with 22 people and 4 groups humburg n00c heliopais hzoltan dakelley sotacam lh49 djkt rtogawa cassj dswan rschulz natstreet druvus jasontsai jmeppley ghattem nuin polivares aprasad niallhaslam idoerg Bioinformatics BergmanLab SIMR bioinformatics Journal picks
	Massively parallel exon capture and library-free resequencing across 16 genomes [My Copy] Nature Methods In Nat Meth, Vol. 6, No. 5. (06 April 2009), pp. 315-316. by Emily H. Turner, Choli Lee, Sarah B. Ng, Deborah A. Nickerson, Jay Shendure posted to sequencing resequencing exon by torfinnnome on 2009-08-15 13:08:23 as along with 7 people and 1 group n00c xingxu jandot fenghezi guhjy jdbowes sleepingcell Journal picks

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sequencing	28
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short-read	13
cancer	12
illumina	11
mapping	10
snp	8
microarray	8
alignment	7
gene	7
expression	7
transcriptome	7
assembly	6
short-reads	6
biomarker	5
resequencing	4
alternative	4
r	4
splicing	4
paired-end	4
bioconductor	3
genome	3
targeted	3
algorithm	3
de	3
novo	3
annotation	2
review	2
web	2
rearrangements	2
cnv	2
pipeline	2
networks	2
proteomics	2
enrichment	2
java	2
fusion	2
qtl	2
browser	2
indels	2
exon	2
pathways	2
filtering	2
visualisation	1
predict	1
gwsa	1
probability	1
sequence	1
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evolution	1
risk	1
sbml	1
rna-seq	1
microdroplet	1
tag	1
coverage	1
affymetrix	1
exome	1
reference	1
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bioinformatics	1
bwa	1
capture	1
breakpoints	1
base-calling	1
metabolomics	1
detection	1
profiling	1
combinatorics	1
cel	1
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ms	1
haplotype	1
454	1
javascript	1
differential	1
anova	1
maldi	1
statistics	1
renal	1
comment	1
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pooling	1
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lung	1
methylation	1
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quality	1
pcr	1
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systems	1
solid	1
artifacts	1
beadchip	1
python	1
signaling	1
analyzer	1
genetics	1
nomenclature	1
deletions	1
comparative	1
breast	1
regulatory	1
epigenomics	1
identifier	1
soap	1
duplication	1
masking	1
inversions	1
genotyping	1
discovery	1
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torfinnnome's sequencing [28 articles] Export

torfinnnome's tags