treangen's accuracy [41 articles] Export

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	Improving accuracy of multiple sequence alignment algorithms based on alignment of neighboring residues. [My Copy] Nucleic acids research (4 December 2008) by Yue Lu, Sing-Hoi H. Sze posted to accuracy alignment jctalk multiple nralign sequence software by treangen on 2008-12-11 15:49:48 as along with 6 people n00c zwang zanexu dakelley gjuggler nuin
	Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment? [My Copy] BMC Evolutionary Biology, Vol. 8 (26 March 2008), 95. by Stefanie Hartmann, Todd J. Vision posted to 2008 accuracy alignment gap by treangen on 2008-12-08 13:57:44 as along with 7 people and 2 groups sriesenfeld skembel natstreet druvus stajich Patola aprasad iSEEM Mycology
	Multiple Sequence Alignment Accuracy and Phylogenetic Inference [My Copy] Systematic Biology, Vol. 55, No. 2. (April 2006), pp. 314-328. by T. Ogdenw, Michael Rosenberg posted to 2006 accuracy alignment jctalk by treangen on 2008-12-08 13:30:34 as along with 3 people druvus aprasad akifumi
	Exploring the Relationship between Sequence Similarity and Accurate Phylogenetic Trees [My Copy] Molecular Biology and Evolution, Vol. 23, No. 11. (November 2006), pp. 2090-2100. by Cantarel, L. Brandi, Morrison, G. Hilary, Pearson, William posted to 2006 accuracy phylogenetic sequence similarity trees by treangen on 2008-12-03 15:48:47 as along with 4 people druvus gjuggler mblwhoi ArtemPankin
	Automatic extraction of reliable regions from multiple sequence alignments [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 5. (2007) by Timo Lassmann, Erik Sonnhammer posted to 2007 accuracy alignment multiple reliability sequence by treangen on 2008-11-25 15:49:47 as along with 1 person druvus
	How Well Does the HoT Score Reflect Sequence Alignment Accuracy? [My Copy] Mol Biol Evol, Vol. 25, No. 8. (1 August 2008), pp. 1576-1580. by Barry G. Hall posted to 2008 accuracy alignment hot jctalk multiple sequence testing by treangen on 2008-11-25 15:47:13 as along with 6 people and 1 group druvus nuin gjuggler bpcusack stajich cabbagesofdoom Mycology
	Automatic assessment of alignment quality [My Copy] Nucleic Acids Research, Vol. 33, No. 22. (2005), pp. 7120-7128. by Timo Lassmann, Erik L. Sonnhammer posted to 2005 accuracy alignment quality sequence testing by treangen on 2008-11-25 15:24:50 as along with 2 people and 2 groups BioNica marcius BioinfoCIPF SGU-CIPF
	The accuracy of several multiple sequence alignment programs for proteins [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (24 October 2006), 471. by Paulo Nuin, Zhouzhi Wang, Elisabeth Tillier posted to 2006 accuracy alignment multiple protein sequence by treangen on 2008-11-25 12:49:41 as along with 11 people torfinnnome natstreet BioNica daforerog druvus winterschlaefer viktor21614 gjuggler tny plofje rabio
	Evolutionary distance estimation and fidelity of pair wise sequence alignment. [My Copy] BMC bioinformatics, Vol. 6 (2005) by M. S. Rosenberg posted to 2005 accuracy alignment distance evolutionary pairwise sequence by treangen on 2008-11-25 12:47:21 as
	How should gaps be treated in parsimony? A comparison of approaches using simulation [My Copy] Molecular Phylogenetics and Evolution, Vol. 42, No. 3. (March 2007), pp. 817-826. by Heath T. Ogden, Michael S. Rosenberg posted to 2007 accuracy alignments dna gaps indels parsimony simulation by treangen on 2008-11-25 11:52:53 as along with 1 person TaqSys
	Stability of Multiple Alignments and Phylogenetic Trees: An Analysis of ABC-Transporter Proteins [My Copy] Algorithms for Molecular Biology, Vol. 3 (06 November 2008), 15. by Andreas W. M. Dress, Burkhard Morgenstern, Holger Wagner posted to 2008 accuracy alignment multiple phylogenetic sequence testing trees by treangen on 2008-11-25 11:42:17 as along with 2 people nuin druvus
	Noisy: identification of problematic columns in multiple sequence alignments [My Copy] Algorithms for Molecular Biology, Vol. 3 (24 June 2008), 7. by Andreas W. M. Dress, Christoph Flamm, Guido Fritzsch, et al.Stefan Grunewald, Matthias Kruspe, Sonja J. Prohaska, Peter F. Stadler posted to 2008 accuracy alignment multiple sequence software by treangen on 2008-11-25 11:41:02 as along with 2 people druvus gjuggler
	Ancestral sequence alignment under optimal conditions. [My Copy] BMC bioinformatics, Vol. 6 (2005) by A. K. Hudek, D. G. Brown posted to 2005 accuracy alignment gap-open multiple sequence by treangen on 2008-11-25 10:02:45 as along with 1 person druvus
	Computational reconstruction of ancestral DNA sequences. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 422 (2008), pp. 171-184. by M. Blanchette, A. B. Diallo, E. D. Green, W. Miller, D. Haussler posted to 2008 accuracy alignmnent ancestral multiple phylogenetic sequence species tree by treangen on 2008-11-25 09:26:55 as along with 1 person druvus
	Logarithmic gap costs decrease alignment accuracy [My Copy] BMC Bioinformatics, Vol. 7 (05 December 2006), 527. by Reed A. Cartwright posted to 2006 accuracy alignment gap gap-penalty sequence by treangen on 2008-11-24 17:42:31 as along with 4 people and 1 group timflutre druvus dpollard groepl EisenLab
	GENOMICS: Lining Up to Avoid Bias [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 416-417. by Antonis Rokas posted to 2008 accuracy alignment genomics sequence testing by treangen on 2008-11-24 15:17:22 as along with 8 people operon dayjm cjeans lilou dandaman renatomilani bpcusack gjuggler
	Model-based prediction of sequence alignment quality [My Copy] Bioinformatics, Vol. 24, No. 19. (1 October 2008), pp. 2165-2171. by Virpi Ahola, Tero Aittokallio, Mauno Vihinen, Esa Uusipaikka posted to 2008 accuracy alignment multiple quality sequence sp statistical by treangen on 2008-11-24 09:45:34 as along with 3 people druvus nuin marck
	Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments [My Copy] Syst Biol, Vol. 56, No. 4. (1 August 2007), pp. 564-577. by Gerard Talavera, Jose Castresana posted to 2007 accuracy alignment phylogeny protein sequence testing by treangen on 2008-11-23 01:10:53 as along with 4 people ramonvidal operon druvus Patola
	Local reliability measures from sets of co-optimal multiple sequence alignments. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 15-24. by G. Landan, D. Graur posted to 2008 accuracy alignment multiple reliability sequence testing by treangen on 2008-11-23 01:05:03 as
	A novel approach to local reliability of sequence alignments [My Copy] Bioinformatics, Vol. 18, No. 6. (1 June 2002), pp. 847-854. by Maximilian Schlosshauer, Mattias Ohlsson posted to 2002 accuracy alignment protein sequence testing by treangen on 2008-11-23 01:04:13 as along with 1 person rabio
	Assessing the Discordance of Multiple Sequence Alignments [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 99, No. 1. (5555) by Amol Prakash, Martin Tompa posted to 2007 accuracy alignment multiple sequence statistics by treangen on 2008-11-22 22:12:23 as
	Differences between pair-wise and multi-sequence alignment methods affect vertebrate genome comparisons [My Copy] Trends in Genetics, Vol. 22, No. 4. (April 2006), pp. 187-193. by Elliott H. Margulies, Christina W. Chen, Eric D. Green posted to 2006 accuracy alignment multiple pairwise review sequence by treangen on 2008-11-22 21:44:02 as along with 5 people and 2 groups aprasad shirleym dchughes smount gjuggler G4ID Genetics-of-Gambling
	Measuring the accuracy of genome-size multiple alignments [My Copy] Genome Biology, Vol. 8 (26 June 2007), R124. by Amol Prakash, Martin Tompa posted to 2007 accuracy alignment genome jctalk2 multiple sequence by treangen on 2008-11-22 21:41:44 as along with 5 people and 2 groups druvus dpollard AaronDarling stajich lilou EisenLab Mycology
	Mind the Gaps: Evidence of Bias in Estimates of Multiple Sequence Alignments. [My Copy] Mol Biol Evol (20 August 2007) by Tanya Golubchik, Michael J J. Wise, Simon Easteal, Lars S S. Jermiin posted to 2007 accuracy alignment gaps jctalk multiple sequence testing by treangen on 2008-11-22 21:01:53 as along with 7 people natstreet BioNica druvus zwang lilou dandaman caseybrown
	Learning scoring schemes for sequence alignment from partial examples. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 5, No. 4. (c 2008), pp. 546-556. by E. Kim, J. Kececioglu posted to 2008 accuracy alignment parameters parametric scoring sequence by treangen on 2008-11-22 20:47:53 as along with 1 person darian
	Assessing the Accuracy of Ancestral Protein Reconstruction Methods [My Copy] PLoS Comput Biol, Vol. 2, No. 6. (23 June 2006), e69. by Paul D. Williams, David D. Pollock, Benjamin P. Blackburne, Richard A. Goldstein posted to 2006 accuracy alignment evolution phylogeny protein by treangen on 2008-11-22 17:34:01 as along with 2 people cmzmasek cjeans
	Measuring Global Credibility with Application to Local Sequence Alignment [My Copy] PLoS Comput Biol, Vol. 4, No. 5. (16 May 2008), e1000077. by Bobbie-Jo M. Webb-Robertson, Lee A. Mccue, Charles E. Lawrence posted to 2008 accuracy alignment local sequence testing by treangen on 2008-11-22 14:44:45 as along with 4 people sconlan mhamada mariakmejia gdb
	Multiple sequence alignment accuracy and evolutionary distance estimation. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by M. S. Rosenberg posted to 2005 accuracy alignment alignment-accuracy multiple sequence by treangen on 2008-11-21 19:26:55 as along with 3 people and 2 groups aprasad dpollard cisevol EisenLab cis-regulatory-evolution
	State of the art: refinement of multiple sequence alignments [My Copy] BMC Bioinformatics, Vol. 7 (14 November 2006), 499. by Saikat Chakrabarti, Christopher J. Lanczycki, Anna R. Panchenko, Teresa M. Przytycka, Paul A. Thiessen, Stephen H. Bryant posted to 2006 accuracy alignment multiple refinement sequence by treangen on 2008-11-21 13:40:44 as along with 2 people natstreet druvus
	Dynamic programming alignment accuracy [My Copy] In RECOMB '98: Proceedings of the second annual international conference on Computational molecular biology (1998), pp. 102-108. by Ian Holmes, Richard Durbin posted to 1998 accuracy alignment dynamic programming by treangen on 2008-11-21 13:37:21 as along with 1 person yylin
	Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment and Tree Accuracy [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 99, No. 1. (5555) by Kevin Liu, Serita Nelesen, Sindhu Raghavan, Randal C. Linder, Tandy Warnow posted to 2008 accuracy alignment gap-penalty phylogeny tree by treangen on 2008-11-21 12:56:41 as
	Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes. [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007) by G. Lunter posted to 2007 accuracy alignment gamma human-mouse indel-rates sequence by treangen on 2008-11-21 10:33:40 as along with 4 people and 1 group aprasad AaronDarling mailund elfar Bioinformatics
	Evolution at the nucleotide level: the problem of multiple whole-genome alignment [My Copy] Hum. Mol. Genet., Vol. 15, No. suppl_1. (15 April 2006), pp. R51-56. by Colin N. Dewey, Lior Pachter posted to 2006 accuracy alignment evolution genome genome-alignment multiple review by treangen on 2008-11-21 09:30:18 as along with 9 people and 2 groups druvus skembel operon Ayest tny dchughes AaronDarling echinotrix Neeperando G4ID Genetics-of-Gambling
	Multiple sequence alignment: In pursuit of homologous DNA positions [My Copy] Genome Res., Vol. 17, No. 2. (1 February 2007), pp. 127-135. by Sudhir Kumar, Alan Filipski posted to 2007 accuracy alignment jctalk multiple sequence testing by treangen on 2008-11-20 18:04:59 as along with 8 people and 1 group Thaverkamp natstreet druvus aprasad indigoviolet BioNica cjeans mingzhi EisenLab
	A reality check for alignments and trees [My Copy] Trends in Genetics, Vol. 23, No. 10. (October 2007), pp. 478-480. by William Martin, Mayo Roettger, Peter J. Lockhart posted to 2007 accuracy alignment multiple sequence testing by treangen on 2008-11-20 13:42:50 as along with 2 people druvus hpaces
	Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments [My Copy] Mol Biol Evol, Vol. 24, No. 6. (1 June 2007), pp. 1380-1383. by Giddy Landan, Dan Graur posted to 2007 accuracy alignment jctalk multiple sequence testing by treangen on 2008-11-20 13:41:25 as along with 9 people and 1 group druvus aprasad rvosa BioNica stajich cjeans zwang lilou mailund FAB-lab
	The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analyses. [My Copy] Pac Symp Biocomput (2008), pp. 25-36. by S. Nelesen, K. Liu, D. Zhao, C. R. Linder, T. Warnow posted to 2008 accuracy alignment jctalk multiple phylogeny testing tree by treangen on 2008-11-19 13:33:00 as along with 2 people and 1 group sriesenfeld dpollard EisenLab
	Alignment Uncertainty and Genomic Analysis [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476. by Karen M. Wong, Marc A. Suchard, John P. Huelsenbeck posted to 2008 accuracy alignment genome jctalk multiple phylogenomics testing by treangen on 2008-11-19 13:32:38 as along with 33 people and 2 groups Jporci operon walshtp darian ptrobajo friendpine skembel druvus bpb aprasad dayjm pradiptaray dpollard tny djkt cjeans zwang lisa1 cactus biomcgary lilou dandaman gjuggler renatomilani mclarenv youdon bpcusack guhjy jdelcampo adacier gracio timflutre jfr EisenLab microbiology_nijmegen
	Bayesian coestimation of phylogeny and sequence alignment [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005), 83. by Gerton Lunter, Istvan Miklos, Alexei Drummond, Jens Jensen, Jotun Hein posted to 2005 accuracy alignment genome method phylogeny statistical-alignment by treangen on 2008-11-19 13:26:52 as along with 10 people cmzmasek operon alexeid druvus bpb pradiptaray AaronDarling timflutre adsmitty Patola
	Uncertainty in homology inferences: assessing and improving genomic sequence alignment. [My Copy] Genome research, Vol. 18, No. 2. (1 February 2008), pp. 298-309. by Gerton Lunter, Andrea Rocco, Naila Mimouni, Andreas Heger, Alexandre Caldeira, Jotun Hein posted to 2008 accuracy alignment genome jctalk2 sequence software statistical-alignment testing by treangen on 2008-02-06 21:41:17 as along with 8 people aprasad brant djkt grahamc dandaman mailund gjuggler AaronDarling
	Is multiple-sequence alignment required for accurate inference of phylogeny? [My Copy] Systematic biology, Vol. 56, No. 2. (April 2007), pp. 206-221. by Michael Höhl, Mark A. Ragan posted to 2007 accuracy alignment multiple phylogeny sequence sequence-alignment testing ungapped by treangen on 2007-07-09 13:17:37 as along with 2 people druvus cjeans

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alignment	96
genome	96
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multiple	64
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treangen's accuracy [41 articles] Export

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