treangen's multiple [64 articles] Export

Recent papers added to treangen's library classified by the tag multiple. You can also see everyone's multiple.

	DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005), 66. by Amarendran Subramanian, Jan W. Menkhoff, Michael Kaufmann, Burkhard Morgenstern posted to alignment local multiple segment sequence software by treangen on 2008-12-12 09:21:24 as along with 3 people walshtp BioNica moborg
	Improving accuracy of multiple sequence alignment algorithms based on alignment of neighboring residues. [My Copy] Nucleic acids research (4 December 2008) by Yue Lu, Sing-Hoi H. Sze posted to accuracy alignment jctalk multiple nralign sequence software by treangen on 2008-12-11 15:49:48 as along with 6 people n00c zwang zanexu dakelley gjuggler nuin
	MAFFT version 5: improvement in accuracy of multiple sequence alignment. [My Copy] Nucleic acids research, Vol. 33, No. 2. (2005), pp. 511-518. by K. Katoh, K. Kuma, H. Toh, T. Miyata posted to alignment msa multiple sequence software by treangen on 2008-12-11 14:22:50 as along with 8 people and 1 group hryk BioNica druvus CharlesM caporaso rabio timflutre urgi biomedical-nlp
	Recent developments in the MAFFT multiple sequence alignment program. [My Copy] Briefings in bioinformatics (27 March 2008) by Kazutaka Katoh, Hiroyuki Toh posted to alignment msa multiple sequence software by treangen on 2008-12-11 14:22:29 as along with 3 people BioNica urgi timflutre
	Automatic extraction of reliable regions from multiple sequence alignments [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 5. (2007) by Timo Lassmann, Erik Sonnhammer posted to 2007 accuracy alignment multiple reliability sequence by treangen on 2008-11-25 15:49:47 as along with 1 person druvus
	How Well Does the HoT Score Reflect Sequence Alignment Accuracy? [My Copy] Mol Biol Evol, Vol. 25, No. 8. (1 August 2008), pp. 1576-1580. by Barry G. Hall posted to 2008 accuracy alignment hot jctalk multiple sequence testing by treangen on 2008-11-25 15:47:13 as along with 6 people and 1 group druvus nuin gjuggler bpcusack stajich cabbagesofdoom Mycology
	The accuracy of several multiple sequence alignment programs for proteins [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (24 October 2006), 471. by Paulo Nuin, Zhouzhi Wang, Elisabeth Tillier posted to 2006 accuracy alignment multiple protein sequence by treangen on 2008-11-25 12:49:41 as along with 11 people torfinnnome natstreet BioNica daforerog druvus winterschlaefer viktor21614 gjuggler tny plofje rabio
	Syntenator: multiple gene order alignments with a gene-specific scoring function. [My Copy] Algorithms for molecular biology : AMB, Vol. 3 (06 November 2008), 14. by Christian Rödelsperger, Christoph Dieterich posted to gene genome multiple software synteny by treangen on 2008-11-25 11:43:41 as along with 5 people and 2 groups avilella Neeperando maximilianh cisevol druvus Ensembl Compara citations BergmanLab
	Stability of Multiple Alignments and Phylogenetic Trees: An Analysis of ABC-Transporter Proteins [My Copy] Algorithms for Molecular Biology, Vol. 3 (06 November 2008), 15. by Andreas W. M. Dress, Burkhard Morgenstern, Holger Wagner posted to 2008 accuracy alignment multiple phylogenetic sequence testing trees by treangen on 2008-11-25 11:42:17 as along with 2 people nuin druvus
	Noisy: identification of problematic columns in multiple sequence alignments [My Copy] Algorithms for Molecular Biology, Vol. 3 (24 June 2008), 7. by Andreas W. M. Dress, Christoph Flamm, Guido Fritzsch, et al.Stefan Grunewald, Matthias Kruspe, Sonja J. Prohaska, Peter F. Stadler posted to 2008 accuracy alignment multiple sequence software by treangen on 2008-11-25 11:41:02 as along with 2 people druvus gjuggler
	DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment. [My Copy] Algorithms for molecular biology : AMB, Vol. 3, No. 1. (27 May 2008), 6. by Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern posted to alignment dialign greedy multiple progressive segment-based sequence software by treangen on 2008-11-25 11:40:24 as along with 7 people Copper_Calcio walshtp BioNica druvus operon reyez dquest
	Multiple genome alignment for identifying the core structure among moderately related microbial genomes [My Copy] BMC Genomics, Vol. 9 (31 October 2008), 515. by Ikuo Uchiyama posted to alignment bacteria core corealigner genome multiple software by treangen on 2008-11-25 10:12:48 as along with 2 people azazello druvus
	Ancestral sequence alignment under optimal conditions. [My Copy] BMC bioinformatics, Vol. 6 (2005) by A. K. Hudek, D. G. Brown posted to 2005 accuracy alignment gap-open multiple sequence by treangen on 2008-11-25 10:02:45 as along with 1 person druvus
	Simultaneous statistical multiple alignment and phylogeny reconstruction. [My Copy] Syst Biol, Vol. 54, No. 4. (August 2005), pp. 548-561. by R. Fleissner, D. Metzler, A. von Haeseler posted to multiple phylogeny sequence statistical-alignment by treangen on 2008-11-25 10:01:29 as along with 3 people carlk druvus AaronDarling
	Computational reconstruction of ancestral DNA sequences. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 422 (2008), pp. 171-184. by M. Blanchette, A. B. Diallo, E. D. Green, W. Miller, D. Haussler posted to 2008 accuracy alignmnent ancestral multiple phylogenetic sequence species tree by treangen on 2008-11-25 09:26:55 as along with 1 person druvus
	Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis [My Copy] Brief Bioinform (29 October 2008), bbn045. by Mohamed R. Aniba, Sophie Siguenza, Anne Friedrich, et al.Frederic Plewniak, Olivier Poch, Aron Marchler-Bauer, Julie D. Thompson posted to alignment case-study expert-systems multiple sequence by treangen on 2008-11-25 09:15:34 as along with 3 people guhjy nuin druvus
	SQUINT: A Multiple Alignment Program and Editor. [My Copy] Bioinformatics (7 May 2007) by Matthew G G. Goode, Allen G G. Rodrigo posted to alignment editor multiple sequence software by treangen on 2008-11-24 09:49:44 as along with 2 people Bevan_Weir grahamc
	Multiple alignment of protein sequences with repeats and rearrangements [My Copy] Nucleic Acids Research, Vol. 34, No. 20. (November 2006), pp. 5932-5942. by Phuong, Tu Minh, Do, et al.B. Chuong, Edgar, C. Robert, Batzoglou, Serafim posted to alignment multiple protein rearrangements repeats sequence software by treangen on 2008-11-24 09:47:19 as along with 2 people yylin hpaces
	Model-based prediction of sequence alignment quality [My Copy] Bioinformatics, Vol. 24, No. 19. (1 October 2008), pp. 2165-2171. by Virpi Ahola, Tero Aittokallio, Mauno Vihinen, Esa Uusipaikka posted to 2008 accuracy alignment multiple quality sequence sp statistical by treangen on 2008-11-24 09:45:34 as along with 3 people druvus nuin marck
	Probalign: multiple sequence alignment using partition function posterior probabilities [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2715-2721. by Roshan, Usman, Livesay, R. Dennis posted to aligment multiple posterior probabilities sequence by treangen on 2008-11-24 09:43:05 as along with 2 people druvus dakelley
	A statistical score for assessing the quality of multiple sequence alignments. [My Copy] BMC bioinformatics, Vol. 7 (03 November 2006), 484. by V. Ahola, T. Aittokallio, M. Vihinen, E. Uusipaikka posted to alignment multiple quality score sequence statistical by treangen on 2008-11-24 09:41:32 as along with 3 people nuin BioNica druvus
	Local reliability measures from sets of co-optimal multiple sequence alignments. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 15-24. by G. Landan, D. Graur posted to 2008 accuracy alignment multiple reliability sequence testing by treangen on 2008-11-23 01:05:03 as
	Assessing the Discordance of Multiple Sequence Alignments [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 99, No. 1. (5555) by Amol Prakash, Martin Tompa posted to 2007 accuracy alignment multiple sequence statistics by treangen on 2008-11-22 22:12:23 as
	Differences between pair-wise and multi-sequence alignment methods affect vertebrate genome comparisons [My Copy] Trends in Genetics, Vol. 22, No. 4. (April 2006), pp. 187-193. by Elliott H. Margulies, Christina W. Chen, Eric D. Green posted to 2006 accuracy alignment multiple pairwise review sequence by treangen on 2008-11-22 21:44:02 as along with 5 people and 2 groups aprasad shirleym dchughes smount gjuggler G4ID Genetics-of-Gambling
	Measuring the accuracy of genome-size multiple alignments [My Copy] Genome Biology, Vol. 8 (26 June 2007), R124. by Amol Prakash, Martin Tompa posted to 2007 accuracy alignment genome jctalk2 multiple sequence by treangen on 2008-11-22 21:41:44 as along with 5 people and 2 groups druvus dpollard AaronDarling stajich lilou EisenLab Mycology
	An improved string composition method for sequence comparison [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 6. (2008), S15. by Guoqing Lu, Shunpu Zhang, Xiang Fang posted to alignment alignment-free comparison composition multiple sequence string by treangen on 2008-11-22 21:17:16 as along with 1 person druvus
	An overview of multiple sequence alignment. [My Copy] Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 3 (November 2003) by V. Simossis, J. Kleinjung, J. Heringa posted to alignment multiple review sequence by treangen on 2008-11-22 21:14:39 as
	Multiple sequence alignment. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 452 (2008), pp. 143-161. by W. Pirovano, J. Heringa posted to alignment multiple review sequence by treangen on 2008-11-22 21:10:10 as along with 1 person druvus
	Mind the Gaps: Evidence of Bias in Estimates of Multiple Sequence Alignments. [My Copy] Mol Biol Evol (20 August 2007) by Tanya Golubchik, Michael J J. Wise, Simon Easteal, Lars S S. Jermiin posted to 2007 accuracy alignment gaps jctalk multiple sequence testing by treangen on 2008-11-22 21:01:53 as along with 7 people natstreet BioNica druvus zwang lilou dandaman caseybrown
	Multiple sequence alignment accuracy and evolutionary distance estimation. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by M. S. Rosenberg posted to 2005 accuracy alignment alignment-accuracy multiple sequence by treangen on 2008-11-21 19:26:55 as along with 3 people and 2 groups aprasad dpollard cisevol EisenLab cis-regulatory-evolution
	Finding functional sequence elements by multiple local alignment [My Copy] Nucl. Acids Res., Vol. 32, No. 1. (2 January 2004), pp. 189-200. by Martin C. Frith, Ulla Hansen, John L. Spouge, Zhiping Weng posted to alignment local multiple sequence by treangen on 2008-11-21 19:23:28 as along with 6 people and 1 group wyatt111 idonaldson wowalz dquest kengg nklee Plantandetc
	Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. [My Copy] Science (New York, N.Y.), Vol. 262, No. 5131. (8 October 1993), pp. 208-214. by C. E. Lawrence, S. F. Altschul, M. S. Boguski, J. S. Liu, A. F. Neuwald, J. C. Wootton posted to alignment gibbs local multiple by treangen on 2008-11-21 14:39:56 as along with 10 people isimpson rsaito Mehlhorn dquest AaronDarling johncumbers jguinney xili03 seitentaisei wenhan
	Local multiple sequence alignment using dead-end elimination [My Copy] Bioinformatics, Vol. 15, No. 11. (1 November 1999), pp. 947-953. by Lukashin, Rosa posted to alignment lma local multiple sequence by treangen on 2008-11-21 14:37:53 as
	State of the art: refinement of multiple sequence alignments [My Copy] BMC Bioinformatics, Vol. 7 (14 November 2006), 499. by Saikat Chakrabarti, Christopher J. Lanczycki, Anna R. Panchenko, Teresa M. Przytycka, Paul A. Thiessen, Stephen H. Bryant posted to 2006 accuracy alignment multiple refinement sequence by treangen on 2008-11-21 13:40:44 as along with 2 people natstreet druvus
	Clustal W and Clustal X version 2.0 [My Copy] Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2947-2948. by M. A. Larkin, G. Blackshields, N. P. Brown, et al.R. Chenna, P. A. McGettigan, H. McWilliam, F. Valentin, I. M. Wallace, A. Wilm, R. Lopez, J. D. Thompson, T. J. Gibson, D. G. Higgins posted to alignment clustal multiple sequence software by treangen on 2008-11-21 13:22:46 as along with 18 people l00cas vprieto Copper_Calcio TLVincent tomjad BioNica udivi Keksle hpm druvus jwm cassj lisa1 ryanraaum bmaust alanrw mschofie marck
	M-Coffee: combining multiple sequence alignment methods with T-Coffee. [My Copy] Nucleic acids research, Vol. 34, No. 6. (2006), pp. 1692-1699. by I. M. Wallace, O. O'Sullivan, D. G. Higgins, C. Notredame posted to alignment multiple sequence software by treangen on 2008-11-21 13:21:57 as along with 1 person druvus
	Recent Evolutions of Multiple Sequence Alignment Algorithms [My Copy] PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123. by Cédric Notredame posted to algorithms alignment multiple review sequence by treangen on 2008-11-21 13:20:40 as along with 11 people and 2 groups druvus mdimmic rvosa timflutre stajich zwang cabbagezs groepl yoanjacquemin marti smbe2008 Bioinformatics FAB-lab
	Segment-based multiple sequence alignment. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008) by T. Rausch, A. K. Emde, D. Weese, A. Döring, C. Notredame, K. Reinert posted to alignment multiple sequence software by treangen on 2008-11-21 13:20:07 as along with 1 person nuin
	AliWABA: alignment on the web through an A-Bruijn approach. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006) by N. C. Jones, D. Zhi, B. J. Raphael posted to abruijn alignment multiple sequence software by treangen on 2008-11-21 11:21:37 as
	Multiple whole genome alignments and novel biomedical applications at the VISTA portal. [My Copy] Nucleic Acids Res, Vol. 35, No. Web Server issue. (July 2007) by M. Brudno, A. Poliakov, S. Minovitsky, I. Ratnere, I. Dubchak posted to alignment genome multiple software visualization by treangen on 2008-11-21 11:17:05 as along with 3 people guhjy Neeperando kcrawlik
	FRESCO: flexible alignment with rectangle scoring schemes. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 3-14. by A. V. Dalca, M. Brudno posted to alignment multiple optimization scoring-schemes sequence software by treangen on 2008-11-21 11:16:18 as
	Multiple sequence alignment using partial order graphs [My Copy] Bioinformatics, Vol. 18, No. 3. (1 March 2002), pp. 452-464. by Christopher Lee, Catherine Grasso, Mark F. Sharlow posted to alignment multiple poa sequence sequence-alignment software by treangen on 2008-11-21 11:11:10 as along with 9 people and 3 groups pimmy BioNica Neeperando ana Cortel AbnerCYH azazello wenhan gjuggler structural_bioinformatics Bioinformatics MBLAB
	Efficient multiple genome alignment [My Copy] Bioinformatics, Vol. 18, No. suppl_1. (1 July 2002), pp. S312-320. by Michael Hohl, Stefan Kurtz, Enno Ohlebusch posted to alignment genome genome-alignment mga multiple software by treangen on 2008-11-21 11:10:28 as along with 1 person Neeperando
	Space efficient computation of rare maximal exact matches between multiple sequences. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 15, No. 4. (May 2008), pp. 357-377. by E. Ohlebusch, S. Kurtz posted to algorithm exact matches maximal mems multiple rare sequences by treangen on 2008-11-21 11:09:28 as
	MUSCLE: multiple sequence alignment with high accuracy and high throughput [My Copy] Nucl. Acids Res., Vol. 32, No. 5. (19 March 2004), pp. 1792-1797. by Robert C. Edgar posted to alignment multiple muscle sequence sequence-alignment software by treangen on 2008-11-21 10:55:53 as along with 29 people and 2 groups mgomes jeargle tomjad foxpowa esyoun natstreet dquest BioNica gjuggler edvin yylin sebk agustinarce fhsantanna nachtalp bpb chrn jwm Haggan sanchezbuelna timflutre olympos martainn newton1234 skumagai bmaust sconlan dmp kcrawlik Radiation_Damage Stressosome
	An efficient algorithm for statistical multiple alignment on arbitrary phylogenetic trees. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 10, No. 6. (2003), pp. 869-889. by G. A. Lunter, I. Miklós, Y. S. Song, J. Hein posted to algorithm multiple phylogenetic statistical-alignment trees by treangen on 2008-11-21 10:34:10 as
	Probabilistic Phylogenetic Inference with Insertions and Deletions [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000172. by Elena Rivas, Sean R. Eddy posted to alignment evolution markov-model model multiple phylogenetics phylogeny sequence by treangen on 2008-11-21 10:02:12 as along with 11 people and 1 group BioNica mhamada pradiptaray zwang nuin timflutre druvus djkt aprasad gjuggler emptyhb iSEEM
	Computation and Analysis of Genomic Multi-Sequence Alignments [My Copy] Annual Review of Genomics and Human Genetics, Vol. 8, No. 1. (9 May 2007), pp. 193-213. by Mathieu Blanchette posted to alignment genome-alignment multiple review sequence by treangen on 2008-11-21 09:31:54 as along with 7 people and 1 group natstreet druvus dpollard lilou nklee maximilianh aprasad EisenLab
	LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA. [My Copy] Genome Res, Vol. 13, No. 4. (April 2003), pp. 721-731. by M. Brudno, C. B. Do, G. M. Cooper, et al.M. F. Kim, E. Davydov, E. D. Green, A. Sidow, S. Batzoglou, posted to alignment genome-alignment multiple sequence software by treangen on 2008-11-21 09:31:11 as along with 14 people and 1 group operon balajis dpollard xwbcn dquest adepace hdopazo lusk Garamonfok adijr natstreet nklee Neeperando kcrawlik EisenLab
	MAVID: Constrained Ancestral Alignment of Multiple Sequences [My Copy] Genome Research, Vol. 14, No. 4. (1 April 2004), pp. 693-699. by Nicolas Bray, Lior Pachter posted to alignment genome multiple sequence software by treangen on 2008-11-21 09:30:47 as along with 5 people nuin pradiptaray operon jmeppley Neeperando

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treangen's multiple [64 articles] Export

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