trfield's library 83 articles Export

	Drosophila Embryos as Model Systems for Monitoring Bacterial Infection in Real Time [My Copy] PLoS Pathog, Vol. 5, No. 7. (17 July 2009), e1000518. by Isabella Vlisidou, Andrea J. Dowling, Iwan R. Evans, Nicholas Waterfield, Richard H. Ffrench-Constant, Will Wood posted to drosophila pathogenesis by trfield on 2009-07-18 03:04:46 as along with 1 person iml
	Role of Mutation in <italic>Pseudomonas aeruginosa</italic> Biofilm Development [My Copy] PLoS ONE, Vol. 4, No. 7. (16 July 2009), e6289. by Tim C. R. Conibear, Samuel L. Collins, Jeremy S. Webb posted to biofilm evolution by trfield on 2009-07-17 04:07:03 as
	Adult Vaccination Strategies for the Control of Pertussis in the United States: An Economic Evaluation Including the Dynamic Population Effects [My Copy] PLoS ONE, Vol. 4, No. 7. (16 July 2009), e6284. by Laurent Coudeville, Annelies Van Rie, Denis Getsios, Jaime J. Caro, Pascal Crépey, Van H. Nguyen posted to epidemiology immunology by trfield on 2009-07-17 03:59:37 as along with 1 person pascalcrepey
	Assessing the relevance of node features for network structure [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 28. (14 July 2009), pp. 11433-11438. by Ginestra Bianconi, Paolo Pin, Matteo Marsili posted to network-analysis by trfield on 2009-07-16 00:31:37 as along with 12 people rdiaz daforerog Kovanen zwang apocapoc Diego_Prada winterstream deanmalmgren tomt21 roys tmmurali statnet
	Functional tradeoffs determine species coexistence via the storage effect [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 28. (14 July 2009), pp. 11641-11645. by Amy L. Angert, Travis E. Huxman, Peter Chesson, D. Lawrence Venable posted to evolution by trfield on 2009-07-16 00:31:09 as
	Modeling of the Bacterial Mechanism of Methicillin-Resistance by a Systems Biology Approach [My Copy] PLoS ONE, Vol. 4, No. 7. (13 July 2009), e6226. by Ida Autiero, Susan Costantini, Giovanni Colonna posted to antibiotic modeling pathogenesis by trfield on 2009-07-16 00:30:26 as along with 2 people sjcockell adampah
	Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis. [My Copy] PloS one, Vol. 4, No. 7. (15 July 2009), e6072. by M. T. Holden, H. Hauser, M. Sanders, et al.T. H. Ngo, I. Cherevach, A. Cronin, I. Goodhead, K. Mungall, M. A. Quail, C. Price, E. Rabbinowitsch, S. Sharp, N. J. Croucher, T. B. Chieu, N. T. Mai, T. S. Diep, N. T. Chinh, M. Kehoe, J. A. Leigh, P. N. Ward, C. G. Dowson, A. M. Whatmore, N. Chanter, P. Iversen, M. Gottschalk, J. D. Slater, H. E. Smith, B. G. Spratt, J. Xu, C. Ye, S. Bentley, B. G. Barrell, C. Schultsz, D. J. Maskell, J. Parkhill posted to genomics pathogenesis by trfield on 2009-07-16 00:28:16 as along with 1 group Journal picks
	ProteinArchitect: Protein Evolution above the Sequence Level [My Copy] PLoS ONE, Vol. 4, No. 7. (15 July 2009), e6176. by Matthias Haimel, Karin Pröll, Michael Rebhan posted to evolution modeling by trfield on 2009-07-16 00:25:40 as along with 3 people gjuggler zwang sjcockell
	The Effect of Ongoing Exposure Dynamics in Dose Response Relationships [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (5 June 2009), e1000399. by Josep M. Pujol, Joseph E. Eisenberg, Charles N. Haas, James S. Koopman posted to epidemiology modeling pathogenesis by trfield on 2009-06-05 14:42:39 as
	Functional States of the genome-scale Escherichia coli transcriptional regulatory system. [My Copy] PLoS computational biology, Vol. 5, No. 6. (5 June 2009), e1000403. by Erwin P. Gianchandani, Andrew R. Joyce, Bernhard Ø. Palsson, Jason A. Papin posted to gene-regulation modeling systems-biology by trfield on 2009-06-05 14:39:42 as along with 3 people schwartzjmc roys TRHvidsten
	<italic>Caenorhabditis elegans</italic> Genomic Response to Soil Bacteria Predicts Environment-Specific Genetic Effects on Life History Traits [My Copy] PLoS Genet, Vol. 5, No. 6. (5 June 2009), e1000503. by Joseph D. Coolon, Kenneth L. Jones, Timothy C. Todd, Bryanua C. Carr, Michael A. Herman posted to ecology evolution gene-regulation physiology by trfield on 2009-06-05 14:36:33 as along with 1 person and 1 group djkt iSEEM
	A Statistical Framework for the Adaptive Management of Epidemiological Interventions [My Copy] PLoS ONE, Vol. 4, No. 6. (5 June 2009), e5807. by Daniel Merl, Leah R. Johnson, Robert B. Gramacy, Marc Mangel posted to epidemiology evolution modeling by trfield on 2009-06-05 14:34:59 as
	Hypergraphs and Cellular Networks [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (29 May 2009), e1000385. by Steffen Klamt, Utz-Uwe Haus, Fabian Theis posted to network-analysis by trfield on 2009-06-04 15:24:19 as along with 11 people rdiaz ptrobajo poirel apocapoc uuh danmaclean fgibson dswan tmmurali Borelli shikin
	What Is Stochastic Resonance? Definitions, Misconceptions, Debates, and Its Relevance to Biology [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (29 May 2009), e1000348. by Mark D. Mcdonnell, Derek Abbott posted to modeling systems-biology by trfield on 2009-06-04 15:17:52 as along with 15 people Sergey_gerbek iml bertelsen sylvain_chevallier fccoelho thegoose Gorzomagnificent reyez bayesian flips kentsis fgibson jjray marekrud GeeSharpMinor
	Using Biotic Interaction Networks for Prediction in Biodiversity and Emerging Diseases [My Copy] PLoS ONE, Vol. 4, No. 5. (28 May 2009), e5725. by Christopher R. Stephens, Joaquín G. Heau, Camila González, Carlos N. Ibarra-Cerdeña, Victor Sánchez-Cordero, Constantino González-Salazar posted to modeling network-analysis systems-biology by trfield on 2009-06-04 15:13:51 as
	Codon Size Reduction as the Origin of the Triplet Genetic Code [My Copy] PLoS ONE, Vol. 4, No. 5. (27 May 2009), e5708. by Pavel V. Baranov, Maxime Venin, Gregory Provan posted to evolution gene-regulation modeling by trfield on 2009-06-04 15:07:41 as
	Stochasticity in Protein Levels Drives Colinearity of Gene Order in Metabolic Operons of Escherichia coli [My Copy] PLoS Biol, Vol. 7, No. 5. (26 May 2009), e1000115. by Károly Kovács, Laurence D. Hurst, Balázs Papp posted to evolution gene-regulation modeling by trfield on 2009-06-04 15:03:36 as along with 6 people elifsu emptyhb dipenps jjray pinney kentsis
	A Big World Inside Small-World Networks [My Copy] PLoS ONE, Vol. 4, No. 5. (25 May 2009), e5686. by Zhihua Zhang, Jianzhi Zhang posted to ecology evolution network-analysis by trfield on 2009-06-04 14:50:33 as along with 2 people tnhh deanmalmgren
	Computational Models of the Notch Network Elucidate Mechanisms of Context-dependent Signaling [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000390. by Smita Agrawal, Colin Archer, David V. Schaffer posted to gene-regulation modeling systems-biology by trfield on 2009-06-04 14:46:52 as along with 2 people cassj agonzale
	SHRiMP: Accurate Mapping of Short Color-space Reads [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000386. by Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno posted to sequencing by trfield on 2009-06-04 14:42:59 as along with 22 people and 4 groups heliopais jfr cthachuk hzoltan bozdagd ilanc burak guhjy djkt n00c natstreet adijr druvus Stew farhat humburg kshameer operon stajich GeeSharpMinor AlexBateman barry Bioinformatics - CRUK Mycology Journal picks Bioinformatics
	Genetic Architecture of Intrinsic Antibiotic Susceptibility [My Copy] PLoS ONE, Vol. 4, No. 5. (20 May 2009), e5629. by Hany S. Girgis, Alison K. Hottes, Saeed Tavazoie posted to antibiotic evolution genetics by trfield on 2009-06-04 14:40:07 as along with 1 person timothee-poisot
	Drug efflux pump deficiency and drug target resistance masking in growing bacteria [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 20. (19 May 2009), pp. 8215-8220. by David Fange, Karin Nilsson, Tanel Tenson, Måns Ehrenberg posted to genetics pathogenesis physiology by trfield on 2009-06-04 14:33:08 as
	The effect of network topology on the stability of discrete state models of genetic control [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 20. (19 May 2009), pp. 8209-8214. by Andrew Pomerance, Edward Ott, Michelle Girvan, Wolfgang Losert posted to gene-regulation modeling systems-biology by trfield on 2009-06-04 14:30:21 as along with 5 people rdiaz megraw schwartzjmc TRHvidsten deanmalmgren
	Inactivation of expression of several genes in a variety of bacterial species by EGS technology [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 20. (19 May 2009), pp. 8163-8168. by Ning Shen, Jae-Hyeong Ko, Gaoping Xiao, et al.Donna Wesolowski, Ge Shan, Bruce Geller, Mina Izadjoo, Sidney Altman posted to genetics by trfield on 2009-06-04 14:27:51 as
	Analysis of Functional Genomic Signals Using the XOR Gate [My Copy] PLoS ONE, Vol. 4, No. 5. (19 May 2009), e5608. by Mahesh Yaragatti, Qi Wen posted to gene-regulation modeling by trfield on 2009-06-04 14:25:05 as
	Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 22. (2 June 2009), pp. 9063-9068. by Patrick H. Degnan, Yeisoo Yu, Nicholas Sisneros, Rod A. Wing, Nancy A. Moran posted to ecology pathogenesis by trfield on 2009-06-03 04:31:51 as along with 1 person kmachemer
	A coordinated network of transporters with overlapping specificities provides a robust survival strategy [My Copy] Proceedings of the National Academy of Sciences (18 May 2009) by Nir Tal, Shimon Schuldiner posted to genomics network-analysis pathogenesis by trfield on 2009-06-03 04:29:27 as along with 2 people viktor21614 jjray
	Evolutionary selection between alternative modes of gene regulation [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 22. (2 June 2009), pp. 8841-8846. by Ulrich Gerland, Terence Hwa posted to evolution gene-regulation by trfield on 2009-06-03 04:26:04 as along with 4 people yyfwuhan bpcusack jjray kshundyak
	<italic>Pseudomonas aeruginosa</italic> PAO1 Preferentially Grows as Aggregates in Liquid Batch Cultures and Disperses upon Starvation [My Copy] PLoS ONE, Vol. 4, No. 5. (13 May 2009), e5513. by David Schleheck, Nicolas Barraud, Janosch Klebensberger, et al.Jeremy S. Webb, Diane Mcdougald, Scott A. Rice, Staffan Kjelleberg posted to biofilm by trfield on 2009-05-13 22:09:51 as
	Network Analysis of Differential Expression for the Identification of Disease-Causing Genes [My Copy] PLoS ONE, Vol. 4, No. 5. (13 May 2009), e5526. by Daniela Nitsch, Léon-Charles Tranchevent, Bernard Thienpont, et al.Lieven Thorrez, Hilde Van Esch, Koenraad Devriendt, Yves Moreau posted to gene-regulation network-analysis by trfield on 2009-05-13 22:06:53 as along with 3 people rdiaz yaredo lthorrez
	Spatial dynamics of ecological public goods [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 19. (12 May 2009), pp. 7910-7914. by Joe Y. Wakano, Martin A. Nowak, Christoph Hauert posted to ecology evolution by trfield on 2009-05-13 22:02:02 as along with 4 people and 1 group halukbingol jagarciag qwermish deanmalmgren Soslab
	Host–pathogen time series data in wildlife support a transmission function between density and frequency dependence [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 19. (12 May 2009), pp. 7905-7909. by Matthew J. Smith, Sandra Telfer, Eva R. Kallio, et al.Sarah Burthe, Alex R. Cook, Xavier Lambin, Michael Begon posted to modeling pathogenesis by trfield on 2009-05-13 22:00:16 as
	Synergy between pathogen release and resource availability in plant invasion [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 19. (12 May 2009), pp. 7899-7904. by Dana Blumenthal, Charles E. Mitchell, Petr Pyšek, Vojtěch Jarošík posted to evolution by trfield on 2009-05-13 21:52:59 as along with 1 person timothee-poisot
	Filter feeders and plankton increase particle encounter rates through flow regime control [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 19. (12 May 2009), pp. 7882-7887. by Stuart Humphries posted to evolution modeling by trfield on 2009-05-13 21:49:36 as along with 1 person katiehumphry
	Genetic reductionist approach for dissecting individual roles of GGDEF proteins within the c-di-GMP signaling network in Salmonella [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 19. (12 May 2009), pp. 7997-8002. by Cristina Solano, Begoña García, Cristina Latasa, et al.Alejandro Toledo-Arana, Violeta Zorraquino, Jaione Valle, Joan Casals, Enrique Pedroso, Iñigo Lasa posted to gene-regulation by trfield on 2009-05-13 21:15:59 as along with 1 person fhsantanna
	How β-Lactam Antibiotics Enter Bacteria: A Dialogue with the Porins [My Copy] PLoS ONE, Vol. 4, No. 5. (12 May 2009), e5453. by Chloë E. James, Kozhinjampara R. Mahendran, Alexander Molitor, et al.Jean-Michel Bolla, Andrey N. Bessonov, Mathias Winterhalter, Jean-Marie Pagès posted to antibiotic transport by trfield on 2009-05-12 19:03:17 as
	Evolutionary Repercussions of Avian Culling on Host Resistance and Influenza Virulence [My Copy] PLoS ONE, Vol. 4, No. 5. (11 May 2009), e5503. by Eunha Shim, Alison P. Galvani posted to evolution modeling pathogenesis by trfield on 2009-05-09 15:00:37 as along with 1 person zwang
	Fault Tolerance in Protein Interaction Networks: Stable Bipartite Subgraphs and Redundant Pathways [My Copy] PLoS ONE, Vol. 4, No. 4. (28 April 2009), e5364. by Arthur Brady, Kyle Maxwell, Noah Daniels, Lenore J. Cowen posted to network-analysis systems-biology by trfield on 2009-04-29 22:42:10 as along with 2 people dakelley deanmalmgren
	A Modeling-Derived Hypothesis on Chronicity in Respiratory Diseases: Desensitized Pathogen Recognition Secondary to Hyperactive IRAK/TRAF6 Signaling [My Copy] PLoS ONE, Vol. 4, No. 4. (24 April 2009), e5332. by Tingting Zhang, Kyung W. Song, Mohammad Hekmat-Nejad, David G. Morris, Brian R. Wong posted to cystic-fibrosis modeling pathogenesis by trfield on 2009-04-29 22:38:37 as
	Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension. [My Copy] BMC systems biology, Vol. 3, No. 1. (2009), 42. by C. Li, M. Nagasaki, K. Ueno, S. Miyano posted to modeling by trfield on 2009-04-28 18:25:18 as along with 4 people kabookie reyez Doug arne
	Modularity and interactions in the genetics of gene expression [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6441-6446. by Oren Litvin, Helen C. Causton, Bo-Juen Chen, Dana Pe'er posted to gene-regulation systems-biology by trfield on 2009-04-24 22:50:46 as along with 13 people zufar frohike guhjy dipenps coela Scis0000002 alweber daforerog TRHvidsten deanmalmgren shikin provero roys
	Species abundance distribution results from a spatial analogy of central limit theorem [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6691-6695. by Arnošt L. Šizling, David Storch, Eva Šizlingová, Jiří Reif, Kevin J. Gaston posted to ecology by trfield on 2009-04-24 22:29:31 as along with 5 people and 1 group gfox djkt archimedian mariopinedakrch yasminlucero iSEEM
	Extracting the multiscale backbone of complex weighted networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6483-6488. by M. Ãngeles Serrano, MariÃ¡n BoguÃ±Ã¡, Alessandro Vespignani posted to network-analysis systems-biology by trfield on 2009-04-24 22:20:02 as along with 9 people and 1 group rdiaz tomt21 edws rsantana pinney deanmalmgren sobolevnrm kevinchannon kshundyak baker-group
	Complexity in bacterial cell–cell communication: Quorum signal integration and subpopulation signaling in the Bacillus subtilis phosphorelay [My Copy] Proceedings of the National Academy of Sciences (20 April 2009) by Ilka B. Bischofs, Joshua A. Hug, Aiwen W. Liu, Denise M. Wolf, Adam P. Arkin posted to gene-regulation modeling by trfield on 2009-04-24 22:06:21 as along with 4 people coela kalvala jjray Winzer
	Internal coarse-graining of molecular systems [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6453-6458. by Jérôme Feret, Vincent Danos, Jean Krivine, Russ Harmer, Walter Fontana posted to modeling systems-biology by trfield on 2009-04-24 21:59:56 as along with 9 people and 1 group jvb leemond31 superpyrin Scis0000002 reyez sobolevnrm paulschlesinger jjray kshundyak baker-group
	Modeling the temporal interplay of molecular signaling and gene expression by using dynamic nested effects models [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6447-6452. by Benedict Anchang, Mohammad J. Sadeh, Juby Jacob, et al.Achim Tresch, Marcel O. Vlad, Peter J. Oefner, Rainer Spang posted to modeling network-analysis systems-biology by trfield on 2009-04-24 19:55:01 as along with 4 people pkm abhishek_tiwari deanmalmgren shikin
	Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 39. by Hossein Zare, Dipen Sangurdekar, Poonam Srivastava, Mostafa Kaveh, Arkady Khodursky posted to gene-regulation network-analysis systems-biology by trfield on 2009-04-20 18:15:44 as along with 2 people TRHvidsten barriot
	Data-driven normalization strategies for high-throughput quantitative RT-PCR. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (19 April 2009), 110. by Jessica C. Mar, Yasumasa Kimura, Kate Schroder, et al.Katharine M. Irvine, Yoshihide Hayashizaki, Harukazu Suzuki, David Hume, John Quackenbush posted to biofinformatics by trfield on 2009-04-20 18:02:31 as along with 7 people and 1 group jfr guhjy lwaldron renatomilani shikin druvus natstreet Bioinformatics
	A Contemporary Microbially Maintained Subglacial Ferrous "Ocean" [My Copy] Science, Vol. 324, No. 5925. (17 April 2009), pp. 397-400. by Jill A. Mikucki, Ann Pearson, David T. Johnston, et al.Alexandra V. Turchyn, James Farquhar, Daniel P. Schrag, Ariel D. Anbar, John C. Priscu, Peter A. Lee posted to anaerobe evolution polymicrobial by trfield on 2009-04-17 20:39:14 as along with 5 people idoerg kinestetika jmeppley michaelbarton neils
	Evolution of a Bacterial Regulon Controlling Virulence and Mg<sup>2+</sup> Homeostasis [My Copy] PLoS Genet, Vol. 5, No. 3. (20 March 2009), e1000428. by Christian J. Perez, Dongwoo Shin, Igor Zwir, Tammy Latifi, Tricia J. Hadley, Eduardo A. Groisman posted to evolution gene-regulation pathogenesis by trfield on 2009-04-06 17:22:23 as

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systems-biology	21
modeling	20
evolution	18
gene-regulation	18
pathogenesis	15
network-analysis	12
biofinformatics	9
ecology	8
anaerobe	5
antibiotic	4
biofilm	4
genomics	4
polymicrobial	4
drosophila	3
epidemiology	3
evolotion	3
genetics	3
immunology	3
taxonomy	3
cystic-fibrosis	2
oral-microbiology	2
physiology	2
prevotella	2
systematics	2
cell	1
cystic	1
death	1
fibrosis	1
metabolomics	1
metagenomics	1
mlsa	1
programmed	1
sequencing	1
streptococcus	1
symbiosis	1
toxin-antitoxin	1
transport	1

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