troels_marstrand's library 63 articles Export

	ConSite: web-based prediction of regulatory elements using cross-species comparison. [My Copy] Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004) by A. Sandelin, W. W. Wasserman, B. Lenhard posted to conservation tfbs by troels_marstrand on 2006-02-10 08:18:31 as
	Identification of conserved regulatory elements by comparative genome analysis. [My Copy] J Biol, Vol. 2, No. 2. (2003) by B. Lenhard, A. Sandelin, L. Mendoza, P. Engström, N. Jareborg, W. W. Wasserman posted to consite phylo tfbs by troels_marstrand on 2006-02-09 06:23:52 as along with 1 person and 1 group cisevol cis-regulatory-evolution
	An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (26 January 2006) by Ryung S. Kim, Hongkai Ji, Wing H. Wong posted to crm-prediction expression profile by troels_marstrand on 2006-02-07 08:21:28 as along with 3 people tuck gpalidwor minostro
	Using hexamers to predict cis-regulatory modules in Drosophila. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (27 October 2005) by Bob Y. Chan, Dennis Kibler posted to crm-prediction hexamer by troels_marstrand on 2006-02-07 08:20:16 as along with 6 people and 1 group maximilianh bobychan indigoviolet brant postrational wrowell EisenLab
	Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes. [My Copy] Genome Res (12 December 2005) by Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, et al.Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-Ichi I. Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano posted to alternative promoter by troels_marstrand on 2006-01-10 08:00:34 as along with 7 people ujh textoris olympos nosada17 antonkratz bethsabrina yoanjacquemin
	Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome [My Copy] Genome Research, Vol. 16, No. 1. (January 2006), pp. 1-10. by Sara J. Cooper, Nathan D. Trinklein, Elizabeth D. Anton, Loan Nguyen, Richard M. Myers posted to characterization experimental by troels_marstrand on 2006-01-10 07:58:52 as along with 4 people absterga rpatward xiaobeizhao olympos
	TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies. [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005) by F. Zhao, Z. Xuan, L. Liu, M. Q. Zhang posted to no-tag by troels_marstrand on 2006-01-05 21:22:00 as
	An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments. [My Copy] Nature biotechnology, Vol. 20, No. 8. (August 2002), pp. 835-839. by X. Shirley Liu, Douglas L. Brutlag, Jun S. Liu posted to no-tag by troels_marstrand on 2006-01-05 21:21:27 as along with 5 people Dulce opheliav dquest yevishere xili03
	Promoter prediction on a genomic scale--the Adh experience. [My Copy] Genome Res, Vol. 10, No. 4. (April 2000), pp. 539-542. by U. Ohler posted to no-tag by troels_marstrand on 2006-01-05 21:20:33 as
	Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences. [My Copy] J Mol Biol, Vol. 212, No. 4. (20 April 1990), pp. 563-578. by P. Bucher posted to no-tag by troels_marstrand on 2006-01-05 21:19:41 as along with 1 person xiaobeizhao
	Predicting polymerase II core promoters by cooperating transcription factor binding sites in eukaryotic genes. [My Copy] Acta Biochim Biophys Sin (Shanghai), Vol. 36, No. 4. (April 2004), pp. 250-258. by X. T. Ma, M. P. Qian, H. X. Tang posted to no-tag by troels_marstrand on 2006-01-05 21:19:03 as
	Identification and characterization of the potential promoter regions of 1031 kinds of human genes. [My Copy] Genome Res, Vol. 11, No. 5. (May 2001), pp. 677-684. by Y. Suzuki, T. Tsunoda, J. Sese, et al.H. Taira, J. Mizushima-Sugano, H. Hata, T. Ota, T. Isogai, T. Tanaka, Y. Nakamura, A. Suyama, Y. Sakaki, S. Morishita, K. Okubo, S. Sugano posted to no-tag by troels_marstrand on 2006-01-05 21:17:30 as
	CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by H. Kawaji, T. Kasukawa, S. Fukuda, et al.S. Katayama, C. Kai, J. Kawai, P. Carninci, Y. Hayashizaki posted to no-tag by troels_marstrand on 2006-01-05 21:14:05 as along with 7 people bertelsen myrtilus olympos kkishore12 gjuggler xiaobeizhao guhjy
	Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 26. (23 December 2003), pp. 15776-15781. by T. Shiraki, S. Kondo, S. Katayama, et al.K. Waki, T. Kasukawa, H. Kawaji, R. Kodzius, A. Watahiki, M. Nakamura, T. Arakawa, S. Fukuda, D. Sasaki, A. Podhajska, M. Harbers, J. Kawai, P. Carninci, Y. Hayashizaki posted to no-tag by troels_marstrand on 2006-01-05 21:13:51 as along with 8 people YukaH myrtilus bertelsen setar xiaobeizhao olympos gjuggler guhjy
	PromoSer: A large-scale mammalian promoter and transcription start site identification service. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3554-3559. by A. S. Halees, D. Leyfer, Z. Weng posted to no-tag by troels_marstrand on 2006-01-05 21:12:37 as
	The Transcriptional Landscape of the Mammalian Genome [My Copy] Science, Vol. 309, No. 5740. (2 September 2005), pp. 1559-1563. by The FANTOM Consortium, P. Carninci, T. Kasukawa, et al.S. Katayama, J. Gough, M. C. Frith, N. Maeda, R. Oyama, T. Ravasi, B. Lenhard, C. Wells, R. Kodzius, K. Shimokawa, V. B. Bajic, S. E. Brenner, S. Batalov, A. R. R. Forrest, M. Zavolan, M. J. Davis, L. G. Wilming, V. Aidinis, J. E. Allen, A. Ambesi-Impiombato, R. Apweiler, R. N. Aturaliya, T. L. Bailey, M. Bansal, L. Baxter, K. W. Beisel, T. Bersano, H. Bono, A. M. Chalk, K. P. Chiu, V. Choudhary, A. Christoffels, D. R. Clutterbuck, M. L. Crowe, E. Dalla, B. P. Dalrymple, B. de Bono, G. Della Gatta, D. di Bernardo, T. Down, P. Engstrom, M. Fagiolini, G. Faulkner, C. F. Fletcher, T. Fukushima, M. Furuno, S. Futaki, M. Gariboldi, P. Georgii-Hemming, T. R. Gingeras, T. Gojobori, R. E. Green, S. Gustincich, M. Harbers, Y. Hayashi, T. K. Hensch, N. Hirokawa, D. Hill, L. Huminiecki, M. Iacono, K. Ikeo, A. Iwama, T. Ishikawa, M. Jakt, A. Kanapin, M. Katoh, Y. Kawasawa, J. Kelso, H. Kitamura, H. Kitano, G. Kollias, S. P. T. Krishnan, A. Kruger, S. K. Kummerfeld, I. V. Kurochkin, L. F. Lareau, D. Lazarevic, L. Lipovich, J. Liu, S. Liuni, S. McWilliam, Madan M. Babu, M. Madera, L. Marchionni, H. Matsuda, S. Matsuzawa, H. Miki, F. Mignone, S. Miyake, K. Morris, S. Mottagui-Tabar, N. Mulder, N. Nakano, H. Nakauchi, P. Ng, R. Nilsson, S. Nishiguchi, S. Nishikawa, F. Nori, O. Ohara, Y. Okazaki, V. Orlando, K. C. Pang, W. J. Pavan, G. Pavesi, G. Pesole, N. Petrovsky, S. Piazza, J. Reed, J. F. Reid, B. Z. Ring, M. Ringwald, B. Rost, Y. Ruan, S. L. Salzberg, A. Sandelin, C. Schneider, C. Schonbach, K. Sekiguchi, C. A. M. Semple, S. Seno, L. Sessa, Y. Sheng, Y. Shibata, H. Shimada, K. Shimada, D. Silva, B. Sinclair, S. Sperling, E. Stupka, K. Sugiura, R. Sultana, Y. Takenaka, K. Taki, K. Tammoja, S. L. Tan, S. Tang, M. S. Taylor, J. Tegner, S. A. Teichmann, H. R. Ueda, E. van Nimwegen, R. Verardo, C. L. Wei, K. Yagi, H. Yamanishi, E. Zabarovsky, S. Zhu, A. Zimmer, W. Hide, C. Bult, S. M. Grimmond, R. D. Teasdale, E. T. Liu, V. Brusic, J. Quackenbush, C. Wahlestedt, J. S. Mattick, D. A. Hume, RIKEN Genome Exploration Research Group and Genome Science Group Genome Network Project Core Group, C. Kai, D. Sasaki, Y. Tomaru, S. Fukuda, M. Kanamori-Katayama, M. Suzuki, J. Aoki, T. Arakawa, J. Iida, K. Imamura, M. Itoh, T. Kato, H. Kawaji, N. Kawagashira, T. Kawashima, M. Kojima, S. Kondo, H. Konno, K. Nakano, N. Ninomiya, T. Nishio, M. Okada, C. Plessy, K. Shibata, T. Shiraki, S. Suzuki, M. Tagami, K. Waki, A. Watahiki, Y. Okamura-Oho, H. Suzuki, J. Kawai, Y. Hayashizaki posted to no-tag by troels_marstrand on 2006-01-05 21:12:04 as along with 19 people and 1 group hagechouchin443 daforerog guhjy myrtilus setar miguel Cortel jwortman jfr tuck lyongu eckart_bindewald kaspermunch balicea forbiddenfaith99 mtagaya olympos raylim gjuggler Bioinformatics
	Computer model for recognition of functional transcription start sites in RNA polymerase II promoters of vertebrates. [My Copy] J Mol Graph Model, Vol. 21, No. 5. (March 2003), pp. 323-332. by V. B. Bajic, S. H. Seah, A. Chong, S. P. Krishnan, J. L. Koh, V. Brusic posted to no-tag by troels_marstrand on 2006-01-05 21:11:55 as
	Identifying combinatorial regulation of transcription factors and binding motifs. [My Copy] Genome biology, Vol. 5, No. 8. (2004) by Mamoru Kato, Naoya Hata, Nilanjana Banerjee, Bruce Futcher, Michael Q. Zhang posted to no-tag by troels_marstrand on 2006-01-05 21:10:33 as along with 4 people roys fenghezi wnpx jacky957
	Identifying regulatory networks by combinatorial analysis of promoter elements [My Copy] Nature Genetics, Vol. 29, No. 2. (10 September 2001), pp. 153-159. by Yitzhak Pilpel, Priya Sudarsanam, George M. Church posted to no-tag by troels_marstrand on 2006-01-05 21:09:53 as along with 8 people and 1 group ipark-kaist farhat imouthesmp xwbcn wnpx noano koller windman83 Bioinformatics
	Developmentally specific role of the CCAAT box in regulation of human gamma-globin gene expression. [My Copy] J Biol Chem, Vol. 279, No. 7. (13 February 2004), pp. 5444-5449. by X. Fang, H. Han, G. Stamatoyannopoulos, Q. Li posted to no-tag by troels_marstrand on 2006-01-05 21:09:17 as
	A comparative analysis of relative occurrence of transcription factor binding sites in vertebrate genomes and gene promoter areas. [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1789-1796. by M. Stepanova, T. Tiazhelova, M. Skoblov, A. Baranova posted to no-tag by troels_marstrand on 2006-01-05 21:08:11 as along with 1 person nuin
	DBTSS, DataBase of Transcriptional Start Sites: progress report 2004. [My Copy] Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004) by Y. Suzuki, R. Yamashita, S. Sugano, K. Nakai posted to dbtss old progress by troels_marstrand on 2006-01-05 21:07:02 as along with 1 person Cortel
	Identification of transcription factor binding sites with variable-order Bayesian networks. [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2657-2666. by I. Ben-Gal, A. Shani, A. Gohr, et al.J. Grau, S. Arviv, A. Shmilovici, S. Posch, I. Grosse posted to bayesian prediction tfbs by troels_marstrand on 2006-01-05 21:06:09 as along with 1 person wnpx
	Prediction of cis-regulatory elements using binding site matrices--the successes, the failures and the reasons for both. [My Copy] Curr Opin Genet Dev, Vol. 15, No. 4. (August 2005), pp. 395-402. by T. Vavouri, G. Elgar posted to preditction review tfbs by troels_marstrand on 2006-01-05 21:05:16 as along with 6 people and 2 groups kaspermunch dpollard adepace lusk Stew brant Bioinformatics EisenLab
	Computational detection of cis -regulatory modules. [My Copy] Bioinformatics, Vol. 19 Suppl 2 (October 2003) by S. Aerts, P. Van Loo, G. Thijs, Y. Moreau, B. De Moor posted to crm-prediction by troels_marstrand on 2006-01-05 14:34:54 as along with 1 person and 1 group indigoviolet EisenLab
	Toucan: deciphering the cis-regulatory logic of coregulated genes. [My Copy] Nucleic Acids Res, Vol. 31, No. 6. (15 March 2003), pp. 1753-1764. by S. Aerts, G. Thijs, B. Coessens, M. Staes, Y. Moreau, B. De Moor posted to platform tfbs tool by troels_marstrand on 2006-01-05 14:33:36 as along with 5 people and 1 group kaspermunch nur77 nklee yevishere xili03 Bioinformatics
	TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006), pp. D108-110. by V. Matys, O. V. Kel-Margoulis, E. Fricke, et al.I. Liebich, S. Land, A. Barre-Dirrie, I. Reuter, D. Chekmenev, M. Krull, K. Hornischer, N. Voss, P. Stegmaier, B. Lewicki-Potapov, H. Saxel, A. E. Kel, E. Wingender posted to tfbs transfac by troels_marstrand on 2006-01-05 12:54:30 as along with 6 people daed humburg daveGerrard reidy frohike guhjy
	DBD: a transcription factor prediction database. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by S. K. Kummerfeld, S. A. Teichmann posted to database prediction tfbs by troels_marstrand on 2006-01-05 12:54:02 as along with 6 people and 1 group isimpson gpalidwor nickluscombe nklee mariakmejia natstreet EBI-regulation
	HTPSELEX--a database of high-throughput SELEX libraries for transcription factor binding sites. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by V. Jagannathan, E. Roulet, M. Delorenzi, P. Bucher posted to database tfbs by troels_marstrand on 2006-01-05 12:51:18 as
	Non-Supervised Generation of Gene Finders for Eukaryotic Species [My Copy] work in progress by Kasper Munch, Anders Krogh posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	Construction of Full-Length-Enriched cDNAs Libraries [My Copy] Methods in Molecular Biology (2000) by Yukata Suzuki, Sumio Sugano posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	Developmentally Specific Role of the CCAAT Box in Regulation of Human $γ$-Globin Expression [My Copy] Journal of Biological Chemistry (2004) by Xiangdong Fang, Hemei Han, George Stamatoyannopoulos, Qiliang Li posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	The molecular biology of the CCAAT-binding factor NF-Y [My Copy] Gene (1999) by Roberto Mantovani posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	Weight Matrix Description of Four Eukaryotic RNA Polymerase II Promoter Elements Derived from 502 Unrelated Promoter Sequences [My Copy] Journal of Molecular Biology (1990) by Philipp Bucher posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	Core promoter elements of eukaryotic genes have a highly distinctive mechanical property [My Copy] Nucleic Acids Research (2004) by Yoshiro Fukue, Noriyuki Sumida, Jun I. Nishikawa, Takashi Ohyama posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	DNA Structure in Human RNA Polymerase II Promoters [My Copy] Journal of Molecular Biology (1998) by Anders G. Pedersen, Pierre Baldi, Yves Chauvin, Søren Brunak posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	Statistical analysis of over-represented words in human promoter sequences [My Copy] Nucleic Acids Research (2004) by Leonardo M. Ramirez, John L. Spouge, Gavin C. Kanga, David Landsman posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	Clustering of DNA Sequences in Human Promoters [My Copy] Genome Research (2004) by Peter C. Fitzgerald, Andrey Shlyakhtenkom, Alain A. Mir, Charles Vinson posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	The Eukaryotic Promoter Database EPD [My Copy] Nucleic Acids Res. (1998) by R. Cavin, T. Junier, P. Bucher posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	Molecular Biology of the Cell, fourth edition [My Copy] (2002) by Bruce Alberts, Alexander Johnson, Julian Lewis, Martin Raff, Keith Roberts, Peter Walter posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	Biological sequence analysis [My Copy] (2002) by R. Durbin, S. Eddy, A. Krogh, G. Mitchison posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	Statistical Methods in Bioinformatics [My Copy] (2002) by Warren J. Ewans, Gregory R. Grant posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	Modern Applied Statistics with S, fourth edition [My Copy] (2002) by W. N. Venables, B. D. Ripley posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	The Elements of Statistical Learning [My Copy] (2001) by T. Hastie, R. Tibshirani, J. Friedman posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	Computational identification of promoters and first exons in the human genome [My Copy] Nature Genetics (2001) by Ramana V. Davuluri, Ivo Grosse, Michael Q. Zhang posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	Promoter2.0: for the recognition of PolII promoter sequences [My Copy] Bioinformatics (1999) by Steen Knudsen posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	Dragon Gene Start Finder: An Advanced System for Finding Approximate Locations of the Start of Gene Transcriptional Units [My Copy] Genome Research (2003) by Vladimir B. Bajic, Seng H. Seah posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	Promoter prediction analysis on the whole human genome [My Copy] Nature Biotechnology (2004) by Vladimir B. Bajic, Sin L. Tan, Yukata Suzuki, Sumio Sugano posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	CpG islands in vertebrate genomes [My Copy] Journal of Molecular Biology (1987) by Gardiner M. Gardner, M. Frommer posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as
	CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences [My Copy] Bioinformatics (2002) by Loic Ponger, Dominique Mouchiroud posted to bibtex-import by troels_marstrand on 2006-01-05 12:19:30 as

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