tronella's library 45 articles Export

	HIV-1 dynamics in vivo: implications for therapy. [My Copy] Nature reviews. Microbiology, Vol. 1, No. 3. (December 2003), pp. 181-190. by Viviana Simon, David D. Ho posted to mutation hiv evolution biology by tronella on 2009-11-24 15:54:08 as
	Presence of human immunodeficiency virus (HIV) type 1, group M, non-B subtypes, Bronx, New York: a sentinel site for monitoring HIV genetic diversity in the United States. [My Copy] The Journal of infectious diseases, Vol. 181, No. 2. (February 2000), pp. 470-475. by P. J. Weidle, C. E. Ganea, K. L. Irwin, et al.D. Pieniazek, J. P. McGowan, N. Olivo, A. Ramos, C. Schable, R. B. Lal, S. D. Holmberg, J. A. Ernst posted to usa subtype risk-factors injecting hiv genetic-diversity foreign_partners by tronella on 2009-11-24 13:28:23 as
	The causes and consequences of HIV evolution. [My Copy] Nature reviews. Genetics, Vol. 5, No. 1. (January 2004), pp. 52-61. by Andrew Rambaut, David Posada, Keith A. Crandall, Edward C. Holmes posted to within-host subtype recombination phylogenetics immune-selection hiv genetic-diversity evolution-rate evolution drug-resistance cross-species by tronella on 2009-11-23 12:21:26 as along with 2 people KevinVanCalster bmaust
	Human immunodeficiency virus type 1 subtypes prevalence in central China. [My Copy] Yonsei medical journal, Vol. 50, No. 5. (31 October 2009), pp. 644-649. by Fei Zhao, Zhe Wang, Wen-Jie J. Li posted to phylogenetics molecular-typing hiv china by tronella on 2009-11-20 14:58:42 as
	A HIV-1 heterosexual transmission chain in Guangzhou, China: a molecular epidemiological study. [My Copy] Virology journal, Vol. 6 (25 September 2009), 148. by Zhigang Han, Tommy W. Leung, Jinkou Zhao, et al.Ming Wang, Lirui Fan, Kai Li, Xinli Pang, Zhenbo Liang, Wilina W. Lim, Huifang Xu posted to sex-workers phylogenetics molecular-typing hiv heterosexual china by tronella on 2009-11-20 14:46:49 as
	Population Dynamics of HIV-1 Inferred From Gene Sequences [My Copy] Genetics, Vol. 151, No. 2. (1 February 1999), pp. 427-438. by Nicholas C. Grassly, Paul H. Harvey, Edward C. Holmes posted to variable-infectivity uncertainty subtype rate population-movement phylogenetics mutation hiv genetic-diversity finding-parameters effective-population-size drug-resistance coalescence by tronella on 2009-11-20 14:34:41 as
	The Molecular Epidemiology of Human Immunodeficiency Virus Type 1 in Six Cities in Britain and Ireland, [My Copy] Virology, Vol. 235, No. 1. (18 August 1997), pp. 166-177. by A. Brown posted to risk-factors parsimony-tree molecular-typing ireland injecting homosexual hiv haemophiliac clustering britain by tronella on 2009-11-19 15:31:54 as
	Exploring the demographic history of DNA sequences using the generalized skyline plot. [My Copy] Molecular biology and evolution, Vol. 18, No. 12. (December 2001), pp. 2298-2305. by K. Strimmer, O. G. Pybus posted to skyline red-panda hiv demographics coalescence china africa by tronella on 2009-11-19 14:24:12 as
	Gendered Epidemiology: Sexual Equality and the Prevalence of HIVAIDS in Sub-Saharan Africa [My Copy] Social Science Quarterly, Vol. 90, No. 5., pp. 1134-1144. by Laurens Niens, David Lowery posted to ssa hiv gender by tronella on 2009-11-19 13:57:23 as
	Outbreaks source: A new mathematical approach to identify their possible location [My Copy] Physica A: Statistical Mechanics and its Applications, Vol. 388, No. 22. (15 November 2009), pp. 4736-4762. by Massimo Buscema, Enzo Grossi, Marco Breda, Tom Jefferson posted to spatial italy foot-and-mouth cholera chikungunya-fever britain by tronella on 2009-11-19 13:48:13 as
	The plague of athens: epidemiology and paleopathology. [My Copy] The Mount Sinai journal of medicine, New York, Vol. 76, No. 5. (October 2009), pp. 456-467. by Robert J. Littman posted to smallpox plague history greece forensic-anthropology economic-factors by tronella on 2009-11-18 12:15:30 as
	Inferring Population History from Molecular Phylogenies [My Copy] Philosophical Transactions: Biological Sciences, Vol. 349, No. 1327. (1995), pp. 25-31. by Sean Nee, Eddie C. Holmes, Andrew Rambaut, Paul H. Harvey posted to population-size phylogenetics coalescence by tronella on 2009-11-06 19:58:02 as
	Bayesian Coalescent Inference of Past Population Dynamics from Molecular Sequences [My Copy] Mol Biol Evol, Vol. 22, No. 5. (1 May 2005), pp. 1185-1192. by A. J. Drummond, A. Rambaut, B. Shapiro, O. G. Pybus posted to skyline phylogenetics hepatitis finding-parameters evolution-rate egypt demographics coalescence by tronella on 2009-11-05 22:22:33 as along with 4 people carpi druvus ryanraaum cstrasser
	Estimation of HIV Incidence in the United States [My Copy] JAMA, Vol. 300, No. 5. (6 August 2008), pp. 520-529. by H. Irene Hall, Ruiguang Song, Philip Rhodes, et al.Joseph Prejean, Qian An, Lisa M. Lee, John Karon, Ron Brookmeyer, Edward H. Kaplan, Matthew T. McKenna, Robert S. Janssen, for the HIV Incidence Surveillance Group posted to usa incidence hiv by tronella on 2009-11-05 18:04:32 as along with 1 person matthewharrywong
	The Impact of Past Epidemics on Future Disease Dynamics [My Copy] (12 Oct 2009) by Shweta Bansal, Lauren A. Meyers posted to percolation partial-immunity immunity by tronella on 2009-11-05 17:51:34 as
	Evolution and emergence of novel human infections [My Copy] Proceedings of the Royal Society B: Biological Sciences, Vol. 276, No. 1675. (22 November 2009), pp. 3937-3943. by N. Arinaminpathy, A. R. McLean posted to zoonotic transmissability influenza fitness evolution adaptation by tronella on 2009-11-05 16:28:17 as
	Characteristics of sexual partnerships, not just of individuals, are associated with condom use and recent HIV infection in rural South Africa [My Copy] AIDS Care: Psychological and Socio-medical Aspects of AIDS/HIV, Vol. 21, No. 8. (2009), pp. 1058-1070. by James R. Hargreaves, Linda A. Morison, Julia C. Kim, et al.Joanna Busza, Godfrey Phetla, John D. H. Porter, Charlotte Watts, Paul M. Pronyk posted to study south-africa partner-distribution hiv edge-properties contraception by tronella on 2009-11-05 16:13:37 as
	Phylogenetic surveillance of viral genetic diversity and the evolving molecular epidemiology of human immunodeficiency virus type 1. [My Copy] Journal of virology, Vol. 81, No. 23. (December 2007), pp. 13050-13056. by Robert J. Gifford, Tulio de Oliveira, Andrew Rambaut, et al.Oliver G. Pybus, David Dunn, Anne-Mieke M. Vandamme, Paul Kellam, Deenan Pillay, UK Collaborative Group on HIV Drug Resistance posted to transmission spatial phylogenetics migration hiv genetic-diversity clustering britain by tronella on 2009-11-04 19:05:07 as
	Assessing the Effects of Human Mixing Patterns on Human Immunodeficiency Virus-1 Interhost Phylogenetics Through Social Network Simulation [My Copy] Genetics, Vol. 172, No. 4. (1 April 2006), pp. 2033-2045. by Steven M. Goodreau posted to phylogenetics model-comparison hiv genetic-diversity core-group assortativity by tronella on 2009-11-04 18:27:58 as
	Incorporating demographic stochasticity into multi-strain epidemic models: application to influenza A [My Copy] Journal of The Royal Society Interface, Vol. 6, No. 40. (6 November 2009), pp. 989-996. by Pavlo Minayev, Neil Ferguson posted to strains stochastic mutation influenza immunity demographics by tronella on 2009-11-04 15:53:46 as
	Molecular Phylodynamics of the Heterosexual HIV Epidemic in the United Kingdom [My Copy] PLoS Pathog, Vol. 5, No. 9. (25 September 2009), e1000590. by Gareth J. Hughes, Esther Fearnhill, David Dunn, et al.Samantha J. Lycett, Andrew Rambaut, Andrew J. Leigh Brown, on behalf of the UK HIV Drug Resistance Collaboration posted to transmission-interval transmission power-law phylodynamics hiv heterosexual drug-resistance clustering britain acute-hiv by tronella on 2009-11-03 22:00:42 as along with 2 people jconway memerman
	Reproductive numbers, epidemic spread and control in a community of households [My Copy] Mathematical Biosciences, Vol. 221, No. 1. (25 September 2009), pp. 11-25. by E. Goldstein, K. Paur, C. Fraser, E. Kenah, J. Wallinga, M. Lipsitch posted to variable-infectivity reproductive-number mass-action influenza finding-parameters control clustering bias by tronella on 2009-11-03 21:13:06 as
	Molecular epidemiology of tuberculosis transmission: Contextualizing the evidence through social network theory☆ [My Copy] Social Science & Medicine, Vol. 69, No. 5. (20 September 2009), pp. 747-753. by Maria-Graciela Hollm-Delgado posted to tuberculosis risk-factors molecular-typing finding-graph-data culture-behaviour clustering close-contact-infections by tronella on 2009-11-03 20:40:33 as
	Predicting the population impact of chlamydia screening programmes: comparative mathematical modelling study. [My Copy] Sexually transmitted infections, Vol. 85, No. 5. (September 2009), pp. 359-366. by M. Kretzschmar, K. M. Turner, P. M. Barton, W. J. Edmunds, N. Low posted to treatment surveillance prevention prevalence netherlands natsal model-comparison dynamic core-group contact-tracing chlamydia britain behaviour-change by tronella on 2009-11-03 19:03:02 as
	Race-based sexual stereotyping and sexual partnering among men who use the internet to identify other men for bareback sex. [My Copy] Journal of sex research, Vol. 46, No. 5. (t 2009), pp. 399-413. by Patrick A. Wilson, Pamela Valera, Ana Ventuneac, Ivan Balan, Matt Rowe, Alex Carballo-Dieguez posted to risk-perception racial-mixing race online-social-networks msm by tronella on 2009-11-02 18:22:41 as
	Concurrent sexual partnerships and racial disparities in HIV infection among men who have sex with men. [My Copy] Sexually transmitted infections, Vol. 85, No. 5. (September 2009), pp. 367-369. by D. D. Bohl, H. F. Raymond, M. Arnold, W. McFarland posted to usa study racial-mixing race msm hiv concurrency assortativity age-group-mixing by tronella on 2009-11-02 16:31:54 as
	HIV risk and social networks among male-to-female transgender sex workers in Boston, Massachusetts. [My Copy] The Journal of the Association of Nurses in AIDS Care : JANAC, Vol. 20, No. 5. (t 2009), pp. 373-386. by Sari L. Reisner, Matthew J. Mimiaga, Sean Bland, Kenneth H. Mayer, Brandon Perkovich, Steven A. Safren posted to usa transgender study sex-workers risk-perception risk-factors hiv economic-factors contraception by tronella on 2009-11-02 16:21:53 as
	Sexual mixing patterns in the spread of gonococcal and chlamydial infections. [My Copy] Am J Public Health, Vol. 89, No. 6. (1 June 1999), pp. 825-833. by S. O. Aral, J. P. Hughes, B. Stoner, et al.W. Whittington, H. H. Handsfield, R. M. Anderson, K. K. Holmes posted to usa study racial-mixing partner-distribution heterosexual gonorrhea demographics chlamydia assortativity age-group-mixing activity-group-mixing by tronella on 2009-11-02 15:51:25 as
	Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 12. (22 March 2005), pp. 4425-4429. by StÃ©phane HuÃ©, Deenan Pillay, Jonathan P. Clewley, Oliver G. Pybus posted to phylogenetics parameters msm migration hiv history finding-parameters britain by tronella on 2009-10-30 20:03:06 as
	Episodic Sexual Transmission of HIV Revealed by Molecular Phylodynamics [My Copy] PLoS Med, Vol. 5, No. 3. (18 March 2008), e50. by Fraser Lewis, Gareth J. Hughes, Andrew Rambaut, Anton Pozniak, Andrew J. Leigh Brown posted to phylogenetics phylodynamics msm hiv dynamic drug-resistance clustering britain by tronella on 2009-10-30 19:00:59 as
	The epidemiological impact of antiretroviral use predicted by mathematical models: a review [My Copy] Emerging Themes in Epidemiology, Vol. 2, No. 1. (10 September 2005), 9. by Rebecca Baggaley, Neil Ferguson, Geoff Garnett posted to treatment transmissability policy haart duration drug-resistance by tronella on 2009-10-27 18:41:56 as along with 1 person gokhan
	The phase transition in inhomogeneous random graphs [My Copy] Random Struct. Algorithms, Vol. 31, No. 1. (2007), pp. 3-122. by Béla Bollobás, Svante Janson, Oliver Riordan posted to phase-transition network-formation maths by tronella on 2009-10-27 18:40:28 as along with 1 person Gralha
	Behavioral Mechanisms in HIV Epidemiology and Prevention: Past, Present, and Future Roles [My Copy] Studies in Family Planning, Vol. 40, No. 3. (2009), pp. 187-204. by Jeffrey B. Bingenheimer, Arline T. Geronimus posted to transmissability prevention prevalence literature-review hiv history duration culture-behaviour by tronella on 2009-10-27 17:59:05 as
	High prevalence of sexually transmitted infections among young Peruvians who have sexual intercourse with foreign travelers in Cuzco. [My Copy] Journal of travel medicine, Vol. 16, No. 5. (t 2009), pp. 299-303. by Miguel M. Cabada, Juan I. Echevarria, Carlos Seas, Eduardo Gotuzzo posted to risk-factors population-movement peru partner-distribution foreign_partners culture-behaviour bridge by tronella on 2009-10-27 14:50:19 as
	Investigation of a cluster of syphilis, gonorrhea, and chlamydia cases among heterosexual Micronesians living on Oahu. [My Copy] Journal of community health, Vol. 34, No. 5. (October 2009), pp. 357-360. by Alan R. Katz, Adrianne M. Cadorna, Maria Veneranda V. Lee, Alan Komeya, Mandy Kiaha, Roy G. Ohye posted to treatment syphilis heterosexual hawaii gonorrhea fieldwork contact-tracing coinfection chlamydia by tronella on 2009-10-27 14:43:05 as
	A cellular automaton model for the effects of population movement and vaccination on epidemic propagation [My Copy] Ecological Modelling, Vol. 133, No. 3. (3 September 2000), pp. 209-223. by G. Sirakoulis posted to vaccination spatial population-movement compartmental-model cellular-automata by tronella on 2009-10-27 14:15:03 as
	An exploratory study on the social and genotypic clustering of HIV infection in men having sex with men. [My Copy] AIDS (London, England), Vol. 23, No. 13. (24 August 2009), pp. 1755-1764. by Shui Shan S. Lee, Dennise K. Tam, Yi Tan, et al.Wai Lai L. Mak, Ka Hing H. Wong, Jonathan H. Chen, Wing Cheong C. Yam posted to spatial phylogenetics msm hong-kong hiv clustering by tronella on 2009-10-27 13:53:09 as
	Global and regional burden of disease and risk factors, 2001: systematic analysis of population health data. [My Copy] Lancet, Vol. 367, No. 9524. (27 May 2006), pp. 1747-1757. by Alan D. Lopez, Colin D. Mathers, Majid Ezzati, Dean T. Jamison, Christopher J. Murray posted to uncertainty treatment risk-factors prevention policy demographics data-collection data-augmentation cost-effectiveness by tronella on 2009-10-27 13:50:17 as along with 3 people divieira gbloeb guhjy
	Bayesian inference for stochastic multitype epidemics in structured populations using sample data [My Copy] Biostat, Vol. 10, No. 4. (1 October 2009), pp. 779-791. by Philip D. O'Neill posted to transmissability sampling prevalence parameters influenza finding-parameters data-augmentation assortativity by tronella on 2009-10-19 15:40:30 as
	A Stratified Approach to Untangling the Behavioral/Biomedical Outcomes Conundrum [My Copy] Sexually Transmitted Diseases, Vol. 29, No. 9. (September 2002), pp. 530-532. by Sevgi O. Aral, Thomas A. Peterman posted to transmissability serodiscordance sampling prevention hiv control contraception behaviour-change by tronella on 2009-10-15 12:58:57 as
	Phylodynamics of Infectious Disease Epidemics. [My Copy] Genetics (21 September 2009) by Erik M. Volz, Sergei L. Kosakovsky Pond, Melissa J. Ward, Andrew J. Leigh Brown, Simon D. Frost posted to phylogenetics molecular-typing differential-equation-model compartmental-model coalescence clustering by tronella on 2009-10-15 12:37:36 as
	Genealogical trees, coalescent theory and the analysis of genetic polymorphisms. [My Copy] Nature reviews. Genetics, Vol. 3, No. 5. (May 2002), pp. 380-390. by Noah A. Rosenberg, Magnus Nordborg posted to phylogenetics partner-distribution evolution coalescence by tronella on 2009-10-12 11:13:12 as along with 3 people lizbiogen ilyashl ArtemPankin
	An agent-based approach for modeling dynamics of contagious disease spread [My Copy] International Journal of Health Geographics, Vol. 8, No. 1. (05 August 2009), 50. by Liliana Perez, Suzana Dragicevic posted to transport spatial compartmental-model close-contact-infections abm by tronella on 2009-09-30 14:59:35 as
	Percolation and epidemics in random clustered networks [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 2. (August 2009), 020901. by Joel C. Miller posted to transmissability percolation network-formation epidemic-threshold clustering assortativity by tronella on 2009-09-30 14:25:43 as along with 2 people vmarceau deanmalmgren
	Stochastic fluctuations in the susceptible-infective-recovered model with distributed infectious periods [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 2. (2009), 021922. by Andrew J. Black, Alan J. McKane, Ana Nunes, Andrea Parisi posted to oscillation duration compartmental-model by tronella on 2009-09-30 13:53:15 as

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hiv	21
phylogenetics	13
clustering	9
britain	7
coalescence	6
risk-factors	6
transmissability	6
assortativity	5
demographics	5
drug-resistance	5
finding-parameters	5
genetic-diversity	5
molecular-typing	5
msm	5
spatial	5
usa	5
compartmental-model	4
evolution	4
heterosexual	4
influenza	4
partner-distribution	4
prevention	4
study	4
treatment	4
china	3
chlamydia	3
contraception	3
culture-behaviour	3
duration	3
history	3
mutation	3
population-movement	3
prevalence	3
racial-mixing	3
subtype	3
age-group-mixing	2
behaviour-change	2
close-contact-infections	2
contact-tracing	2
control	2
core-group	2
data-augmentation	2
dynamic	2
economic-factors	2
evolution-rate	2
foreign_partners	2
gonorrhea	2
immunity	2
injecting	2
migration	2
model-comparison	2
network-formation	2
parameters	2
percolation	2
phylodynamics	2
policy	2
race	2
risk-perception	2
sampling	2
sex-workers	2
skyline	2
transmission	2
uncertainty	2
variable-infectivity	2
abm	1
activity-group-mixing	1
acute-hiv	1
adaptation	1
africa	1
bias	1
biology	1
bridge	1
cellular-automata	1
chikungunya-fever	1
cholera	1
coinfection	1
concurrency	1
cost-effectiveness	1
cross-species	1
data-collection	1
differential-equation-model	1
edge-properties	1
effective-population-size	1
egypt	1
epidemic-threshold	1
fieldwork	1
finding-graph-data	1
fitness	1
foot-and-mouth	1
forensic-anthropology	1
gender	1
greece	1
haart	1
haemophiliac	1
hawaii	1
hepatitis	1
homosexual	1
hong-kong	1
immune-selection	1
incidence	1
ireland	1
italy	1
literature-review	1
mass-action	1
maths	1
natsal	1
netherlands	1
online-social-networks	1
oscillation	1
parsimony-tree	1
partial-immunity	1
peru	1
phase-transition	1
plague	1
population-size	1
power-law	1
rate	1
recombination	1
red-panda	1
reproductive-number	1
serodiscordance	1
smallpox	1
south-africa	1
ssa	1
stochastic	1
strains	1
surveillance	1
syphilis	1
transgender	1
transmission-interval	1
transport	1
tuberculosis	1
vaccination	1
within-host	1
zoonotic	1

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