tuck's transcription [58 articles] Export

Recent papers added to tuck's library classified by the tag transcription. You can also see everyone's transcription.

	MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model. [My Copy] Genome Biol, Vol. 5, No. 12. (2004) by A. M. Moses, D. Y. Chiang, D. A. Pollard, V. N. Iyer, M. B. Eisen posted to transcription transcription_factor by tuck on 2006-09-09 03:16:42 as along with 4 people and 2 groups indigoviolet lusk Garamonfok cisevol EisenLab cis-regulatory-evolution
	Transcriptional regulatory code of a eukaryotic genome [My Copy] Nature, Vol. 431, No. 7004. (02 September 2004), pp. 99-104. by Christopher T. Harbison, D. Benjamin Gordon, Tong I. Lee, et al.Nicola J. Rinaldi, Kenzie D. Macisaac, Timothy W. Danford, Nancy M. Hannett, Jean-Bosco Tagne, David B. Reynolds, Jane Yoo, Ezra G. Jennings, Julia Zeitlinger, Dmitry K. Pokholok, Manolis Kellis, P. Alex Rolfe, Ken T. Takusagawa, Eric S. Lander, David K. Gifford, Ernest Fraenkel, Richard A. Young posted to network transcription yeast by tuck on 2006-06-29 17:20:59 as along with 29 people and 8 groups viren4388 daveGerrard Dulce talponer wowalz siebert alokm lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk nklee cisevol njcitulike xili03 brant mariakmejia kristallreiner snow_dragon aalibes Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling BergmanLab
	Comprehensive Analysis of Combinatorial Regulation using the Transcriptional Regulatory Network of Yeast [My Copy] Journal of Molecular Biology, Vol. In Press, Corrected Proof by S. Balaji, Madan M. Babu, Lakshminarayan M. Iyer, Nicholas M. Luscombe, L. Aravind posted to network transcription yeast by tuck on 2006-06-15 02:20:07 as along with 4 people MRosefield schwartzjmc gespim cjeans
	Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. [My Copy] Science (New York, N.Y.), Vol. 308, No. 5725. (20 May 2005), pp. 1149-1154. by Jill Cheng, Philipp Kapranov, Jorg Drenkow, et al.Sujit Dike, Shane Brubaker, Sandeep Patel, Jeffrey Long, David Stern, Hari Tammana, Gregg Helt, Victor Sementchenko, Antonio Piccolboni, Stefan Bekiranov, Dione K. Bailey, Madhavan Ganesh, Srinka Ghosh, Ian Bell, Daniela S. Gerhard, Thomas R. Gingeras posted to chip-chip transcription by tuck on 2006-06-14 10:26:45 as along with 10 people bartjacobse haarcuba xingxu hagechouchin443 inesdesantiago GeeSharpMinor karbak tmmurali bertelsen jasonflannick
	Geminin's double life: chromatin connections that regulate transcription at the transition from proliferation to differentiation. [My Copy] Cell Cycle, Vol. 5, No. 4. (February 2006), pp. 374-379. by S. Seo, K. L. Kroll posted to chromatin regulation transcription trithorax by tuck on 2006-05-19 10:22:25 as
	Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4. [My Copy] Nature, Vol. 441, No. 7090. (11 May 2006), pp. 173-178. by Mark Gilchrist, Vesteinn Thorsson, Bin Li, et al.Alistair G. Rust, Martin Korb, Jared C. Roach, Kathleen Kennedy, Tsonwin Hai, Hamid Bolouri, Alan Aderem posted to chip-chip network transcription by tuck on 2006-05-16 03:42:43 as along with 4 people ptrobajo schwartzjmc biozhang2001 miguel
	Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases. [My Copy] Genome Biol, Vol. 7, No. 1. (2006) by A. R. Forrest, D. F. Taylor, M. L. Crowe, et al.A. M. Chalk, N. J. Waddell, G. Kolle, G. J. Faulkner, R. Kodzius, S. Katayama, C. Wells, C. Kai, J. Kawai, P. Carninci, Y. Hayashizaki, S. M. Grimmond posted to phosphorylation transcription by tuck on 2006-05-08 02:36:10 as
	Developmental control via GATA factor interplay at chromatin domains. [My Copy] J Cell Physiol, Vol. 205, No. 1. (October 2005), pp. 1-9. by E. H. Bresnick, M. L. Martowicz, S. Pal, K. D. Johnson posted to gata1 transcription by tuck on 2006-03-06 15:59:16 as
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted to transcription transcription_factor by tuck on 2006-03-06 02:19:21 as along with 38 people and 6 groups mpizbioinfo megraw Dulce farhat wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb bryankr icases ana barry aalibes aprasad jfr chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon dandaman vietanh0 ep161302 nuin Stew structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
	Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors, [My Copy] Journal of Molecular Biology, Vol. 309, No. 1. (25 May 2001), pp. 99-120. by Alexander E. Kel, Olga V. Kel-Margoulis, Peggy J. Farnham, Stephanie M. Bartley, Edgar Wingender, Michael Q. Zhang posted to module regulation transcription transcription_factor by tuck on 2006-03-06 02:13:51 as along with 1 person nklee
	Differential coexpression analysis using microarray data and its application to human cancer. [My Copy] Bioinformatics, Vol. 21, No. 24. (15 December 2005), pp. 4348-4355. by J. K. Choi, U. Yu, O. J. Yoo, S. Kim posted to microarray transcription by tuck on 2006-02-28 18:15:43 as
	Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues. [My Copy] Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4205-4208. by S. Wachi, K. Yoneda, R. Wu posted to interactome network transcription by tuck on 2006-02-28 18:12:14 as along with 1 person jfr
	A global role for EKLF in definitive and primitive erythropoiesis. [My Copy] Blood (27 December 2005) by Denise Hodge, Elise Coghill, Janelle Keys, et al.Tina Maguire, Belinda Hartmann, Alasdair McDowall, Mitchell Weiss, Sean Grimmond, Andrew Perkins posted to eklf erythropoiesis transcription transcription_factor by tuck on 2006-02-14 15:05:18 as
	Clonogenicity, gene expression and phenotype during neutrophil versus erythroid differentiation of cytokine-stimulated CD34+ human marrow cells in vitro [My Copy] British Journal of Haematology, Vol. 127, No. 4. (2004), pp. 451-463. by Louise Edvardsson, Josefina Dykes, Martin L. Olsson, Tor Olofsson posted to gata2 gene_expression transcription by tuck on 2006-02-14 04:58:05 as
	Hierarchical and ontogenic positions serve to define the molecular basis of human hematopoietic stem cell behavior. [My Copy] Dev Cell, Vol. 8, No. 5. (May 2005), pp. 651-663. by F. Shojaei, J. Trowbridge, L. Gallacher, et al.L. Yuefei, D. Goodale, F. Karanu, K. Levac, M. Bhatia posted to microarray stemcell transcription by tuck on 2006-02-14 04:20:53 as
	The PEA3 Ets transcription factor is a downstream target of the HER2/Neu receptor tyrosine kinase. [My Copy] Oncogene, Vol. 16, No. 3. (22 January 1998), pp. 301-310. by R. C. O'Hagan, J. A. Hassell posted to her2 transcription transcription_factor by tuck on 2006-02-07 13:52:13 as
	Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (18 March 2004), 31. by Feng Gao, Barrett Foat, Harmen Bussemaker posted to chip-chip microarray model transcription by tuck on 2006-01-27 18:08:13 as along with 9 people and 1 group antonkratz lusk tmmurali gpalidwor nickluscombe koller Ao_Li2007 mariakmejia tvdbulck EBI-regulation
	P-Match: transcription factor binding site search by combining patterns and weight matrices. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005) by D. S. Chekmenev, C. Haid, A. E. Kel posted to algorithm regulation transcription by tuck on 2006-01-25 14:09:00 as along with 1 person reidy
	GATA Motifs Regulate Early Hematopoietic Lineage-Specific Expression of the Gata2 Gene [My Copy] Mol. Cell. Biol., Vol. 25, No. 16. (15 August 2005), pp. 7005-7020. by Maki Kobayashi-Osaki, Osamu Ohneda, Norio Suzuki, et al.Naoko Minegishi, Tomomasa Yokomizo, Satoru Takahashi, Kim-Chew Lim, James D. Engel, Masayuki Yamamoto posted to gata1 hematopoiesis transcription by tuck on 2006-01-11 19:28:12 as
	Gene expression profiling during all-trans retinoic acid-induced cell differentiation of acute promyelocytic leukemia cells. [My Copy] J Mol Diagn, Vol. 5, No. 4. (November 2003), pp. 212-221. by L. Yang, H. Zhao, S. W. Li, et al.K. Ahrens, C. Collins, S. Eckenrode, Q. G. Ruan, R. A. McIndoe, J. X. She posted to microarray myelopoiesis nb4 transcription by tuck on 2006-01-05 11:36:22 as
	Dissection of a DNA-damage-induced transcriptional network using a combination of microarrays, RNA interference and computational promoter analysis. [My Copy] Genome Biol, Vol. 6, No. 5. (2005) by R. Elkon, S. Rashi-Elkeles, Y. Lerenthal, et al.C. Linhart, T. Tenne, N. Amariglio, G. Rechavi, R. Shamir, Y. Shiloh posted to dna_damage microarray transcription by tuck on 2006-01-03 20:38:40 as
	Transcriptional regulation of granulocyte and monocyte development. [My Copy] Oncogene, Vol. 21, No. 21. (13 May 2002), pp. 3377-3390. by A. D. Friedman posted to differentiation granulocyte granulocyte_maturation myelopoiesis transcription by tuck on 2006-01-03 01:38:14 as
	Gene expression profile reveals deregulation of genes with relevant functions in the different subclasses of acute myeloid leukemia [My Copy] Leukemia, Vol. aop, No. current. (20 January 2005) by N. C. Gutierrez, R. Lopez-Perez, J. M. Hernandez, et al.I. Isidro, B. Gonzalez, M. Delgado, E. Ferminan, J. L. Garcia, L. Vazquez, M. Gonzalez, J. F. S. San Miguel posted to leukemia microarray transcription by tuck on 2006-01-02 09:39:44 as
	Repression of c-Kit and Its Downstream Substrates by GATA-1 Inhibits Cell Proliferation during Erythroid Maturation [My Copy] Mol. Cell. Biol., Vol. 25, No. 15. (1 August 2005), pp. 6747-6759. by Veerendra Munugalavadla, Louis C. Dore, Bai L. Tan, et al.Li Hong, Melanie Vishnu, Mitchell J. Weiss, Reuben Kapur posted to c-kit erythropoiesis gata1 transcription by tuck on 2006-01-02 02:03:35 as
	Identification of Promoter Regions in the Human Genome by Using a Retroviral Plasmid Library-Based Functional Reporter Gene Assay [My Copy] Genome Res., Vol. 13, No. 7. (1 July 2003), pp. 1765-1774. by Shirin Khambata-Ford, Yueyi Liu, Christopher Gleason, et al.Mark Dickson, Russ B. Altman, Serafim Batzoglou, Richard M. Myers posted to genome promoter transcription by tuck on 2006-01-02 01:02:36 as
	Antagonism between C/EBPbeta and FOG in eosinophil lineage commitment of multipotent hematopoietic progenitors [My Copy] Genes Dev., Vol. 14, No. 19. (1 October 2000), pp. 2515-2525. by Erich Querfurth, Mikkel Schuster, Holger Kulessa, et al.John D. Crispino, Gabriele Doderlein, Stuart H. Orkin, Thomas Graf, Claus Nerlov posted to commitment hematopoiesis regulation transcription by tuck on 2005-12-31 13:29:39 as
	Onset and inheritance of abnormal epigenetic regulation in hematopoietic cells [My Copy] Human Molecular Genetics, Vol. 14, No. 4. (15 February 2005), pp. 493-502. by Stefania Bottardi, Vincent Bourgoin, Natacha Pierre-Charles, Eric Milot posted to epigenetics hematopoiesis regulation transcription by tuck on 2005-12-31 13:23:51 as
	De novo cis-regulatory module elicitation for eukaryotic genomes [My Copy] PNAS, Vol. 102, No. 20. (17 May 2005), pp. 7079-7084. by Mayetri Gupta, Jun S. Liu posted to cis_regulatory_module transcription by tuck on 2005-12-30 06:20:44 as along with 2 people and 1 group indigoviolet lusk EisenLab
	Heterogeneous nuclear ribonucleoprotein C1/C2, MeCP1, and SWI/SNF form a chromatin remodeling complex at the beta-globin locus control region [My Copy] PNAS, Vol. 102, No. 42. (18 October 2005), pp. 15012-15017. by Milind C. Mahajan, Geeta J. Narlikar, Gokul Boyapaty, Robert E. Kingston, Sherman M. Weissman posted to chromatin globin transcription by tuck on 2005-12-30 01:42:34 as
	A Novel Computational Approach for the Prediction of Networked Transcription Factors of Aryl Hydrocarbon-Receptor-Regulated Genes [My Copy] Mol Pharmacol, Vol. 66, No. 6. (1 December 2004), pp. 1557-1572. by Alexander Kel, Susanne Reymann, Volker Matys, Paul Nettesheim, Edgar Wingender, Jurgen Borlak posted to genetic_algorithm module transcription by tuck on 2005-12-30 01:18:30 as
	Constrained Binding Site Diversity within Families of Transcription Factors Enhances Pattern Discovery Bioinformatics [My Copy] Journal of Molecular Biology, Vol. 338, No. 2. (23 April 2004), pp. 207-215. by Albin Sandelin, Wyeth W. Wasserman posted to protein transcription by tuck on 2005-12-29 05:07:07 as along with 3 people maximilianh hagechouchin443 nklee
	Myeloid or Lymphoid Promiscuity as a Critical Step in Hematopoietic Lineage Commitment [My Copy] Developmental Cell, Vol. 3, No. 1. (July 2002), pp. 137-147. by Toshihiro Miyamoto, Hiromi Iwasaki, Boris Reizis, et al.Min Ye, Thomas Graf, Irving L. Weissman, Koichi Akashi posted to hematopoiesis transcription by tuck on 2005-12-24 14:10:41 as
	Isolation and Characterization of Hematopoietic Transcription Factor Complexes by in Vivo Biotinylation Tagging and Mass Spectrometry [My Copy] Ann NY Acad Sci, Vol. 1054, No. 1. (1 November 2005), pp. 55-67. by Frank Grosveld, Patrick Rodriguez, Natalia Meier, et al.Sanja Krpic, Farzin Pourfarzad, Petros Papadopoulos, Katarzyna Kolodziej, George P. Patrinos, Arnd Hostert, John Strouboulis posted to hematopoiesis protein transcription by tuck on 2005-12-24 03:58:38 as
	Global regulation of erythroid gene expression by transcription factor GATA-1 [My Copy] Blood, Vol. 104, No. 10. (15 November 2004), pp. 3136-3147. by John J. Welch, Jason A. Watts, Christopher R. Vakoc, et al.Yu Yao, Hao Wang, Ross C. Hardison, Gerd A. Blobel, Lewis A. Chodosh, Mitchell J. Weiss posted to erythropoiesis microarray transcription by tuck on 2005-12-24 03:57:57 as
	The transcriptional program of terminal granulocytic differentiation [My Copy] Blood, Vol. 105, No. 4. (15 February 2005), pp. 1785-1796. by Kim Theilgaard-Monch, Lars C. Jacobsen, Rehannah Borup, et al.Thomas Rasmussen, Malene D. Bjerregaard, Finn C. Nielsen, Jack B. Cowland, Niels Borregaard posted to hematopoiesis microarray myelopoiesis transcription by tuck on 2005-12-24 03:42:51 as
	Transcriptional accessibility for genes of multiple tissues and hematopoietic lineages is hierarchically controlled during early hematopoiesis [My Copy] Blood, Vol. 101, No. 2. (15 January 2003), pp. 383-389. by Koichi Akashi, Xi He, Jie Chen, et al.Hiromi Iwasaki, Chao Niu, Brooke Steenhard, Jiwang Zhang, Jeff Haug, Linheng Li posted to hematopoiesis transcription by tuck on 2005-12-24 03:37:39 as
	Priming the Hematopoietic Pump [My Copy] Immunity, Vol. 19, No. 5. (November 2003), pp. 633-634. by Stuart H. Orkin posted to hematopoiesis transcription by tuck on 2005-12-24 03:29:59 as
	Stem cells The road not taken [My Copy] Nature, Vol. 435, No. 7042. (01 June 2005), pp. 573-575. by Hanno Hock, Stuart H. Orkin posted to hematopoiesis stemcell transcription by tuck on 2005-12-24 03:29:19 as
	Helix-Loop-Helix Proteins: Regulators of Transcription in Eucaryotic Organisms [My Copy] Mol. Cell. Biol., Vol. 20, No. 2. (15 January 2000), pp. 429-440. by Mark E. Massari, Cornelis Murre posted to bhlh hematopoiesis transcription by tuck on 2005-12-24 03:00:45 as along with 5 people and 1 group Biomedyknight guhjy balicea nickluscombe heliopais EBI-regulation
	Decoding hematopoietic specificity in the helix-loop-helix domain of the transcription factor SCL/Tal-1. [My Copy] Mol Cell Biol, Vol. 24, No. 17. (September 2004), pp. 7491-7502. by T. M. Schlaeger, A. Schuh, S. Flitter, et al.A. Fisher, H. Mikkola, S. H. Orkin, P. Vyas, C. Porcher posted to bhlh hematopoiesis transcription by tuck on 2005-12-24 01:03:56 as
	The "stem cell leukemia" gene: what's in a name? [My Copy] Blood, Vol. 103, No. 9. (1 May 2004), pp. 3249-3250. by Malcolm A. Moore posted to hematopoiesis leukemia switch transcription by tuck on 2005-12-24 01:02:02 as
	Specification of hematopoietic and vascular development by the bHLH transcription factor SCL without direct DNA binding. [My Copy] Development, Vol. 126, No. 20. (October 1999), pp. 4603-4615. by C. Porcher, E. C. Liao, Y. Fujiwara, L. I. Zon, S. H. Orkin posted to hematopoiesis switch transcription by tuck on 2005-12-24 01:01:13 as
	Transcriptional regulation of lymphocyte lineage commitment. [My Copy] Bioessays, Vol. 21, No. 9. (September 1999), pp. 726-742. by E. V. Rothenberg, J. C. Telfer, M. K. Anderson posted to hematopoiesis model transcription by tuck on 2005-12-23 15:12:27 as
	Developmental Impact of Leukemic Fusion Genes on Stem Cell Fate [My Copy] Ann NY Acad Sci, Vol. 1044, No. 1. (1 June 2005), pp. 16-23. by Tariq Enver, Shinobu Tsuzuki, John Brown, et al.Dengli Hong, Rajeev Gupta, Tony Ford, Minenori-Ishimae Egucchi, Mariko Egucchi, Mel Greaves posted to hematopoiesis leukemia transcription by tuck on 2005-12-17 04:37:15 as
	Molecular Signatures of Self-Renewal, Differentiation, and Lineage Choice in Multipotential Hemopoietic Progenitor Cells In Vitro [My Copy] Mol. Cell. Biol., Vol. 24, No. 2. (15 January 2004), pp. 741-756. by Ludovica Bruno, Reinhard Hoffmann, Fraser Mcblane, et al.John Brown, Rajeev Gupta, Chirag Joshi, Stella Pearson, Thomas Seidl, Clare Heyworth, Tariq Enver posted to hematopoiesis microarray transcription by tuck on 2005-12-17 04:01:45 as
	Gene expression signatures define novel oncogenic pathways in T cell acute lymphoblastic leukemia [My Copy] Cancer Cell, Vol. 1, No. 1. (February 2002), pp. 75-87. by Adolfo A. Ferrando, Donna S. Neuberg, Jane Staunton, et al.Mignon L. Loh, Christine Huard, Susana C. Raimondi, Fred G. Behm, Ching-Hon Pui, James R. Downing, Gary D. Gilliland posted to leukemia microarray t-cell transcription by tuck on 2005-12-17 03:34:57 as
	Transcriptional Profiling of Human Hematopoiesis During In Vitro Lineage-Specific Differentiation [My Copy] Stem Cells, Vol. 23, No. 8. (1 September 2005), pp. 1154-1169. by Martina Komor, Saskia Guller, Claudia D. Baldus, et al.Sven de Vos, Dieter Hoelzer, Oliver G. Ottmann, Wolf-K Hofmann posted to microarray stemcell transcription by tuck on 2005-12-16 03:26:00 as
	Novel transcription factors in human CD34 antigen-positive hematopoietic cells [My Copy] Blood, Vol. 100, No. 1. (17 June 2002), pp. 107-119. by Ignatius Gomes, Tiffany T. Sharma, Seby Edassery, Noreen Fulton, Brenton G. Mar, Carol A. Westbrook posted to hematopoiesis transcription by tuck on 2005-12-15 21:35:22 as
	Zinc-finger transcription factor Gfi-1: versatile regulator of lymphocytes, neutrophils and hematopoietic stem cells. [My Copy] Curr Opin Hematol, Vol. 13, No. 1. (January 2006), pp. 1-6. by Hanno Hock, Stuart H. Orkin posted to hematopoiesis transcription by tuck on 2005-12-15 19:20:32 as
	Hypomethylation-linked activation of PAX2 mediates tamoxifen-stimulated endometrial carcinogenesis [My Copy] Nature, Vol. 438, No. 7070. (15 December 2005), pp. 981-987. by Huijian Wu, Yupeng Chen, Jing Liang, et al.Bin Shi, Ge Wu, Ying Zhang, Dan Wang, Ruifang Li, Xia Yi, Hua Zhang, Luyang Sun, Yongfeng Shang posted to carcinogenesis methylome transcription by tuck on 2005-12-14 21:22:57 as along with 1 person misonneh

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transcription	58
microarray	42
hematopoiesis	35
stemcell	20
cancer	18
transcription_factor	17
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model	14
network	14
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methylome	10
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