urgi's short-reads [13 articles] Export Sort

Recent papers added to urgi's library classified by the tag short-reads. You can also see everyone's short-reads.

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	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted to short-reads mapping by urgi on 2009-12-14 10:31:56 as along with 35 people and 4 groups agbiotec lianping hzoltan cthachuk maren bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon ghattem n00c danmaclean ppgardne nuin rschulz natstreet druvus humburg BergmanLab SIMR bioinformatics Bioinformatics Journal picks
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to short-reads mapping by urgi on 2009-12-14 10:31:03 as along with 40 people and 2 groups claire_jubin seninp heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier ghattem jbhiatt mmartin michaelbarton polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	Computation for ChIP-seq and RNA-seq studies. [My Copy] Nature methods In Nat Meth, Vol. 6, No. 11 Suppl. (15 November 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to short-reads rna-seq chip-seq by urgi on 2009-11-23 17:50:23 as along with 28 people and 2 groups aprasad humburg fenghezi n00c ongenetics Jporci pst epigenetics timflutre molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 tonamswish inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais molnet-macs Orengo Group Journal Picks
	RNA-Seq: a revolutionary tool for transcriptomics [My Copy] Nature Reviews Genetics, Vol. 10, No. 1. (01 January 2009), pp. 57-63. by Zhong Wang, Mark Gerstein, Michael Snyder posted to short-reads rna-seq by urgi on 2009-11-06 09:53:20 as along with 43 people and 1 group bsamal zufar hongkeun_park ngehlenborg hzoltan sandfire maren jwfoley RNA-protein cthachuk heliopais GustavoLacerda rdiaz TRHvidsten dswan roys woodson8 jonilaserson gdb n00c ThomasDOtto burak natstreet athma druvus tonamswish fishtank daed JohnBallam jmcq dandaman cassj xingxu idonaldson raiyar inesdesantiago vplagnol jbhiatt giovanni orzenil nuin guhjy GeeSharpMinor CUBES
	The Sequence Alignment/Map format and SAMtools. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 16. (15 August 2009), pp. 2078-2079. by Heng Li, Bob Handsaker, Alec Wysoker, et al.Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin, 1000 Genome Project Data Processing Subgroup posted to short-reads format algorithm by urgi on 2009-10-12 15:08:04 as along with 29 people and 2 groups MarkFiers n00c darian cthachuk hzoltan seb1 heliopais idonaldson GustavoLacerda stubrown cassj kshameer ciax polivares carlosjavierna jandot katholt jmcq guhjy orzenil jasontsai operon farhat AlexBateman chrisamiller nuin natstreet sandfire druvus BergmanLab Journal picks
	Assembling millions of short DNA sequences using SSAKE [My Copy] Bioinformatics, Vol. 23, No. 4. (February 2007), pp. 500-501. by Warren, L. Rene, Sutton, et al.G. Granger, Jones, J. M. Steven, Holt, A. Robert posted to file-import-08-05-13 short-reads software by urgi on 2008-05-13 17:19:21 as
	R-Coffee: a method for multiple alignment of non-coding RNA. [My Copy] Nucleic acids research (17 April 2008) by Andreas Wilm, Desmond G G. Higgins, Cédric Notredame posted to short-reads by urgi on 2008-05-07 16:41:39 as along with 2 people marck Neeperando
	SOAP: short oligonucleotide alignment program [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 713-714. by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang posted to short-reads by urgi on 2008-05-07 16:37:33 as along with 27 people humburg cthachuk hzoltan antonkratz adijr jmanning2k pachorip jmcq jsatkosk jasontsai n00c hpaces skembel maren natstreet druvus orzenil pengchy umit guhjy ghattem GustavoLacerda niallhaslam mdimon caseybrown bozdagd waszak
	Comparative genome assembly. [My Copy] Briefings in bioinformatics, Vol. 5, No. 3. (September 2004), pp. 237-248. by Mihai Pop, Adam Phillippy, Arthur L. Delcher, Steven L. Salzberg posted to amos comparative_genomic short-reads software by urgi on 2008-04-08 11:05:33 as along with 12 people and 2 groups michaelbarton robsyme dakelley natstreet druvus treangen azazello wenhan tpreeprem mariakmejia Neeperando Ema MBLAB gatech-compgenomics
	PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data [My Copy] BMC Bioinformatics, Vol. 7 (25 August 2006), 390. by Kuo P. Chiu, Chee-Hong Wong, Qiongyu Chen, et al.Pramila Ariyaratne, Hong S. Ooi, Chia-Lin Wei, Wing-Kin K. Sung, Yijun Ruan posted to alignment mapping short-reads software by urgi on 2008-04-08 10:58:50 as along with 1 person guhjy
	Bioinformatics challenges of new sequencing technology. [My Copy] Trends in genetics : TIG, Vol. 24, No. 3. (11 March 2008), pp. 142-149. by Mihai Pop, Steven L. Salzberg posted to 454 resequencing short-reads solexa solid by urgi on 2008-04-03 08:57:01 as along with 36 people michaelbarton Jporci cthachuk hzoltan hpaces heliopais imaginatio operon daforerog n00c ptrobajo orzenil APRegier katholt kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
	The impact of next-generation sequencing technology on genetics [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 133-141. by E MARDIS, posted to short-reads by urgi on 2008-04-03 08:47:11 as along with 24 people and 2 groups rshe jasontsai n00c kiekyon jessopher daforerog psique idoerg jameswasmuth floatingpoint brdwilde neils jmcq jbsaltz guhjy dchughes djkt niallhaslam zerojinx hpaces jlgreen cybaer1 giovenko druvus Green Lab iSEEM
	High-throughput sequence alignment using Graphics Processing Units [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007), 474. by Michael Schatz, Cole Trapnell, Arthur Delcher, Amitabh Varshney posted to alignment gpu high_throughput mummer sequence short-reads software technologies by urgi on 2008-04-01 18:20:14 as along with 21 people and 3 groups agbiotec cthachuk aheilbut druvus polivares naoya n00c natstreet rschulz operon orzenil Yanno guhjy sephy lusk laughcry nedwards mdimon cndewey heliopais tpreeprem BergmanLab KCL & UCL Bioinformatics gatech-compgenomics

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urgi's short-reads [13 articles] Export Sort

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