vahmurk's library 118 articles Export

	S[sub 1] and S[sub 2] Excited States of Gas-Phase Schiff-Base Retinal Chromophores [My Copy] Physical Review Letters, Vol. 96, No. 1. (2006), 018304. by I. B. Nielsen, L. Lammich, L. H. Andersen posted to excited_state light_absorption pigments retinal schiff_base uv by vahmurk on 2009-07-23 09:23:09 as
	Visual pigments. IV. Experimental and theoretical investigations of the absorption spectra of retinal Schiff bases and retinals [My Copy] Journal of the American Chemical Society, Vol. 96, No. 7. (1 April 1974), pp. 2063-2068. by Arnold M. Schaffer, Walter H. Waddell, Ralph S. Becker posted to excited_state light_absorption pigments retinal schiff_base uv by vahmurk on 2009-07-23 09:21:46 as
	CLOSING IN ON BACTERIORHODOPSIN: Progress in Understanding the Molecule [My Copy] Annual Review of Biophysics and Biomolecular Structure, Vol. 28, No. 1. (1999), pp. 367-399. by Ulrich Haupts, Jörg Tittor, Dieter Oesterhelt posted to 090405 bacteriorhodopsin review by vahmurk on 2009-04-05 20:36:33 as
	Free-Energy Simulations of the Retinal Cis → Trans Isomerization in Bacteriorhodopsin† [My Copy] Biochemistry, Vol. 37, No. 9. (1 March 1998), pp. 2843-2853. by Ann Hermone, Krzysztof Kuczera posted to 090405 bacteriorhodopsin free_energy isomerisation by vahmurk on 2009-04-05 20:34:54 as
	Partitioning of free energy gain between the photoisomerized retinal and the protein in bacteriorhodopsin. [My Copy] Biochemistry, Vol. 37, No. 28. (14 July 1998), pp. 9889-9893. by A. K. Dioumaev, L. S. Brown, R. Needleman, J. K. Lanyi posted to autoisomerisation bacteriorhodopsin conformational_changes photocycle photoisomeration by vahmurk on 2009-02-18 13:12:15 as
	Relationship of retinal configuration and internal proton transfer at the end of the bacteriorhodopsin photocycle. [My Copy] Biochemistry, Vol. 35, No. 48. (3 December 1996), pp. 15461-15466. by H. T. Richter, R. Needleman, H. Kandori, A. Maeda, J. K. Lanyi posted to bacteriorhodopsin isomerisation mechanism mutation photocycle structure by vahmurk on 2009-02-09 00:45:12 as
	Key Role of Electrostatic Interactions in Bacteriorhodopsin Proton Transfer [My Copy] Journal of the American Chemical Society, Vol. 126, No. 44. (1 November 2004), pp. 14668-14677. by Ana-Nicoleta Bondar, Stefan Fischer, Jeremy C. Smith, Marcus Elstner, Sandor Suhai posted to bacteriorhodopsin electrostatic_interactions proton_pathways by vahmurk on 2009-02-08 23:17:18 as
	Structural and energetic determinants of primary proton transfer in bacteriorhodopsin [My Copy] Photochem. Photobiol. Sci., Vol. 5, No. 6. (2006), pp. 547-552. by Ana-Nicoleta Bondar, Jeremy C. Smith, Stefan Fischer posted to back_isomerisation bacteriorhodopsin proton_pathways qmmm by vahmurk on 2009-02-08 23:06:11 as
	Tuning of retinal twisting in bacteriorhodopsin controls the directionality of the early photocycle steps. [My Copy] The journal of physical chemistry. B, Vol. 109, No. 31. (11 August 2005), pp. 14786-14788. by A. N. Bondar, S. Fischer, S. Suhai, J. C. Smith posted to back_isomerisation bacteriorhodopsin photocycle by vahmurk on 2009-02-08 11:10:54 as
	Unidirectional proton transfer mechanism in the L→M→N sequence of bacteriorhodopsin [My Copy] Journal of Molecular Structure: THEOCHEM, Vol. 664-665 (15 December 2003), pp. 125-133. by K. Murata posted to bacteriorhodopsin l m n proton_pathways structure by vahmurk on 2009-02-01 00:06:42 as
	Hydration switch model for the proton transfer in the Schiff base region of bacteriorhodopsin [My Copy] Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1658, No. 1-2. (July 2004), pp. 72-79. by H. Kandori posted to bacteriorhodopsin proton_pathways schiff_base switch by vahmurk on 2009-02-01 00:06:31 as
	Crystallographic Structure of the Retinal and the Protein after Deprotonation of the Schiff Base: The Switch in the Bacteriorhodopsin Photocycle [My Copy] Journal of Molecular Biology, Vol. 321, No. 4. (23 August 2002), pp. 727-737. by J. Lanyi posted to bacteriorhodopsin mechanism schiff_base switch by vahmurk on 2009-01-31 23:52:12 as
	Bacteriorhodopsin. Correspondence of the photocycle and electrogenesis with sites of the molecule. [My Copy] Biochemistry. Biokhimii͡a, Vol. 69, No. 12. (December 2004), pp. 1407-1409. by L. V. Khitrina, A. L. Ksenofontov posted to bacteriorhodopsin photocycle proton_pathways by vahmurk on 2009-01-25 11:37:40 as
	Photoelectrochemical cycle of bacteriorhodopsin. [My Copy] Biochemistry. Biokhimii͡a, Vol. 66, No. 11. (November 2001), pp. 1220-1233. by I. V. Kalaidzidis, A. D. Kaulen, A. N. Radionov, L. V. Khitrina posted to bacteriorhodopsin photocycle review by vahmurk on 2009-01-25 11:34:52 as
	Amino acids with an intermolecular proton bond as proton storage site in bacteriorhodopsin. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 50. (16 December 2008), pp. 19672-19677. by P. Phatak, N. Ghosh, H. Yu, Q. Cui, M. Elstner posted to bacteriorhodopsin proton_pathways structure by vahmurk on 2009-01-25 03:12:30 as
	How Environment Supports a State: Molecular Dynamics Simulations of Two States in Bacteriorhodopsin Suggest Lipid and Water Compensation [My Copy] Biophysical Journal, Vol. 87, No. 1. (July 2004), pp. 129-145. by H. Jang, P. Crozier, M. Stevens, T. Woolf posted to bacteriorhodopsin environment_support lipid-bilayer md membrane protein water by vahmurk on 2009-01-25 02:51:39 as
	Molecular Mechanism of Ion Transport in Bacteriorhodopsin: Insights from Crystallographic, Spectroscopic, Kinetic, and Mutational Studies [My Copy] The Journal of Physical Chemistry B, Vol. 104, No. 48. (1 December 2000), pp. 11441-11448. by Janos K. Lanyi posted to bacteriorhodopsin isomerisation light_absorption mechanism photocycle photoisomeration review spectrum structure by vahmurk on 2009-01-25 02:44:14 as
	Proton transfers in the bacteriorhodopsin photocycle [My Copy] Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1757, No. 8. (August 2006), pp. 1012-1018. by J. Lanyi posted to bacteriorhodopsin photocycle proton_pathways review by vahmurk on 2009-01-25 02:40:51 as
	Optimization of bacteriorhodopsin for bioelectronic devices [My Copy] Trends in Biotechnology, Vol. 20, No. 9. (1 September 2002), pp. 387-394. by K. Wise posted to bacteriorhodopsin nanotechnology optical_disc review by vahmurk on 2009-01-25 02:21:24 as
	Molecular mechanism of protein-retinal coupling in bacteriorhodopsin [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 92, No. 24. (21 November 1995), pp. 11120-11124. by J. K. Delaney, U. Schweiger, S. Subramaniam posted to bacteriorhodopsin photocycle protein-retinal_coupling structure by vahmurk on 2009-01-22 15:39:09 as
	Late Events in the Photocycle of Bacteriorhodopsin Mutant L93A [My Copy] Biophysical Journal, Vol. 84, No. 6. (2003), pp. 3848-3856. by R. Tóth-Boconádi, L. Keszthelyi, W. Stoeckenius posted to bacteriorhodopsin conformational_changes isomerisation mutation photoisomeration retinal structure by vahmurk on 2009-01-22 15:32:29 as
	Electrostatics and electrodynamics of bacteriorhodopsin. [My Copy] Biophysical journal, Vol. 71, No. 6. (December 1996), pp. 3381-3391. by D. Porschke posted to 090105 bacteriorhodopsin charges lipid-bilayer membrane monomer protein structure trimer by vahmurk on 2009-01-05 00:49:05 as
	Polarization multiplexed write-once-read-many optical data storage in bacteriorhodopsin films [My Copy] Opt. Lett., Vol. 30, No. 22. (15 November 2005), pp. 3060-3062. by Baoli Yao, Ming Lei, Liyong Ren, et al.Neimule Menke, Yingli Wang, Thorsten Fischer, Norbert Hampp posted to 081218 bacteriorhodopsin optical_disc by vahmurk on 2008-12-18 22:01:09 as
	Three-Layer ONIOM Studies of the Dark State of Rhodopsin: The Protonation State of Glu181 [My Copy] Journal of Molecular Biology, Vol. 383, No. 1. (31 October 2008), pp. 106-121. by K. Hall, T. Vreven, M. Frisch, M. Bearpark posted to 081218 qmmm rhodopsin spectrum by vahmurk on 2008-12-17 22:13:10 as
	Implementation of the SCC-DFTB Method for Hybrid QM/MM Simulations within the Amber Molecular Dynamics Package. [My Copy] J Phys Chem A (24 May 2007) by Gustavo D. Seabra, Ross C. Walker, Marcus Elstner, David A. Case, Adrian E. Roitberg posted to 081218 bacteriorhodopsin mechanism qmmm by vahmurk on 2008-12-17 22:11:05 as along with 3 people and 1 group krapnik charris5 xdeupi LabCompMed
	Bacteriorhodopsin as a Photochromic Retinal Protein for Optical Memories [My Copy] Chemical Reviews, Vol. 100, No. 5. (1 May 2000), pp. 1755-1776. by Norbert Hampp posted to 081218 bacteriorhodopsin optical_disc by vahmurk on 2008-12-17 22:08:51 as
	<i>Ab initio</i>, tight-binding and QM/MM calculations of the rhodopsin chromophore in its binding pocket [My Copy] Phase Transitions, Vol. 77, No. 1. (2004), pp. 31-45. by M. Sugihara, V. Buss, P. Entel, et al.J. Hafner, A. N. Bondar, M. Elstner, T. Frauenheim posted to 081218 md photoisomeration protein qm qmmm rhodopsin spectrum water by vahmurk on 2008-12-17 21:34:39 as
	Structures and spectral signatures of protonated water networks in bacteriorhodopsin. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 17. (24 April 2007), pp. 6980-6985. by G. Mathias, D. Marx posted to 081207 bacteriorhodopsin cpmd qmmm water by vahmurk on 2008-12-07 10:51:14 as along with 2 people and 1 group xdeupi saravan LabCompMed
	Geometry optimization with QM/MM, ONIOM, and other combined methods. I. Microiterations and constraints [My Copy] Journal of Computational Chemistry, Vol. 24, No. 6. (2003), pp. 760-769. by Thom Vreven, Keiji Morokuma, Ödön Farkas, Bernhard H. Schlegel, Michael J. Frisch posted to 081118 bacteriorhodopsin method qmmm retinal spectrum uv by vahmurk on 2008-11-17 23:45:03 as
	Investigation of the S0S1 excitation in bacteriorhodopsin with the ONIOM(MO:MM) hybrid method [My Copy] Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta), Vol. 109, No. 3. (18 April 2003), pp. 125-132. by T. Vreven, K. Morokuma posted to 081118 bacteriorhodopsin method opsin_shift qmmm retinal spectrum uv by vahmurk on 2008-11-17 23:40:25 as
	pKa calculations suggest storage of an excess proton in a hydrogen-bonded water network in bacteriorhodopsin [My Copy] Journal of Molecular Biology, Vol. 312, No. 1. (07 September 2001), pp. 203-219. by V. Spassov posted to bacteriorhodopsin charges structure by vahmurk on 2008-10-24 17:41:22 as
	The surface potential on the purple membrane measured using a modified bacteriorhodopsin chromophore as the spectroscopic probe [My Copy] FEBS Letters, Vol. 250, No. 2. (3 July 1989), pp. 179-182. by B. Ehrenberg posted to bacteriorhodopsin mutation retinal spectrum structure by vahmurk on 2008-10-07 13:21:16 as
	Insights into excited-state and isomerization dynamics of bacteriorhodopsin from ultrafast transient UV absorption [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 11. (14 March 2006), pp. 4101-4106. by S. Schenkl, F. van Mourik, N. Friedman, et al.M. Sheves, R. Schlesinger, S. Haacke, M. Chergui posted to bacteriorhodopsin excited_state isomerisation light_absorption spectrum uv by vahmurk on 2008-10-07 13:13:37 as along with 1 person kjell
	Structure, initial excited-state relaxation, and energy storage of rhodopsin resolved at the multiconfigurational perturbation theory level [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 52. (28 December 2004), pp. 17908-17913. by Tadeusz Andruniów, Nicolas Ferré, Massimo Olivucci posted to 081006 mechanism photoisomeration qm rhodopsin structure by vahmurk on 2008-10-06 11:38:28 as
	Probing the Ultrafast Charge Translocation of Photoexcited Retinal in Bacteriorhodopsin [My Copy] Science, Vol. 309, No. 5736. (5 August 2005), pp. 917-920. by S. Schenkl, F. van Mourik, G. van der Zwan, S. Haacke, M. Chergui posted to 081006 bacteriorhodopsin conformational_changes excited_state photoisomeration retinal structure by vahmurk on 2008-10-06 10:44:28 as along with 1 person kjell
	Coherent control of retinal isomerization in bacteriorhodopsin. [My Copy] Science, Vol. 313, No. 5791. (1 September 2006), pp. 1257-1261. by V. I. Prokhorenko, A. M. Nagy, S. A. Waschuk, L. S. Brown, R. R. Birge, R. J. Miller posted to 081006 bacteriorhodopsin photoisomeration retinal spectrum by vahmurk on 2008-10-06 10:36:34 as along with 2 people and 1 group eeruowl samjlord UFS
	Comparison of the Dynamics of the Primary Events of Bacteriorhodopsin in Its Trimeric and Monomeric States [My Copy] Biophys. J., Vol. 83, No. 3. (1 September 2002), pp. 1557-1566. by Jianping Wang, Stephan Link, Colin D. Heyes, Mostafa A. El-Sayed posted to 081006 bacteriorhodopsin light_absorption mechanism monomer photocycle photoisomeration proton_pathways trimer by vahmurk on 2008-10-06 10:17:55 as
	The retinal chromophore/chloride ion pair: Structure of the photoisomerization path and interplay of charge transfer and covalent states [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 18. (3 May 2005), pp. 6255-6260. by Alessandro Cembran, Fernando Bernardi, Massimo Olivucci, Marco Garavelli posted to 081006 bacteriorhodopsin mechanism photoisomeration proton_pathways retinal by vahmurk on 2008-10-06 10:15:21 as
	X-ray Structure of Bacteriorhodopsin at 2.5 Angstroms from Microcrystals Grown in Lipidic Cubic Phases [My Copy] Science, Vol. 277, No. 5332. (12 September 1997), pp. 1676-1681. by Eva Pebay-Peyroula, Gabriele Rummel, Jurg Rosenbusch, P., Ehud M. Landau posted to 081006 bacteriorhodopsin channel membrane photocycle proton_pathways structure trimer by vahmurk on 2008-10-06 10:03:18 as
	Mechanism of Ion Transport across Membranes. BACTERIORHODOPSIN AS A PROTOTYPE FOR PROTON PUMPS [My Copy] J. Biol. Chem., Vol. 272, No. 50. (12 December 1997), pp. 31209-31212. by Janos K. Lanyi posted to 081006 bacteriorhodopsin channel conformational_changes photocycle photoisomeration proton_pathways retinal water by vahmurk on 2008-10-06 09:58:59 as
	Replacement effects of neutral amino acid residues of different molecular volumes in the retinal binding cavity of bacteriorhodopsin on the dynamics of its primary process. [My Copy] Biophys. J., Vol. 70, No. 6. (1 June 1996), pp. 2875-2881. by S. L. Logunov, M. A. El-Sayed, J. K. Lanyi posted to 081006 bacteriorhodopsin mutation photocycle photoisomeration spectrum by vahmurk on 2008-10-06 09:55:18 as
	Chemical Dynamics in Proteins: The Photoisomerization of Retinal in Bacteriorhodopsin [My Copy] Science, Vol. 279, No. 5358. (20 March 1998), pp. 1886-1891. by Feng Gai, K. C. Hasson, Cooper J. Mcdonald, Philip A. Anfinrud posted to 081006 bacteriorhodopsin md mechanism photocycle photoisomeration retinal spectrum by vahmurk on 2008-10-06 09:51:42 as
	Excited state dynamics of bacteriorhodopsin revealed by transient stimulated emission spectra [My Copy] Chemical Physics Letters, Vol. 261, No. 4-5. (25 October 1996), pp. 389-395. by G. Haran posted to 081006 bacteriorhodopsin excited_state md spectrum by vahmurk on 2008-10-06 09:46:18 as
	The photoisomerization of retinal in bacteriorhodopsin: Experimental evidence for a three-state model — PNAS [My Copy] PNAS (1996) by K. C. Hasson, G. A. I. Feng, Philip A. Anfinrud posted to no-tag by vahmurk on 2008-10-06 09:43:25 as
	Vibrational Spectrum of the J-625 Intermediate in the Room Temperature Bacteriorhodopsin Photocycle [My Copy] J. Phys. Chem. A, Vol. 104, No. 18. (11 May 2000), pp. 4130-4139. by G. H. Atkinson, L. Ujj, Y. Zhou posted to 081006 bacteriorhodopsin j-625 light_absorption mechanism photocycle photoisomeration retinal spectrum by vahmurk on 2008-10-06 09:28:51 as
	Real-time spectroscopy of transition states in bacteriorhodopsin during retinal isomerization [My Copy] Nature, Vol. 414, No. 6863. (29 November 2001), pp. 531-534. by Takayoshi Kobayashi, Takashi Saito, Hiroyuki Ohtani posted to bacteriorhodopsin isomerisation retinal spectrum by vahmurk on 2008-10-06 09:17:09 as
	The energetics of the primary proton transfer in bacteriorhodopsin revisited: It is a sequential light-induced charge separation after all [My Copy] Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1777, No. 5. (May 2008), pp. 441-452. by S. Braunsand, P. Sharma, Z. Chu, A. Pisliakov, A. Warshel posted to 081002 bacteriorhodopsin mechanism protein proton_pathways by vahmurk on 2008-10-02 21:46:27 as
	Regeneration and inhibition of proton pumping activity of bacteriorhodopsin blue membrane by cationic amine anesthetics [My Copy] Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1669, No. 1. (15 May 2005), pp. 17-25. by A. Shibata, A. Sakata, S. Ueno, et al.T. Hori, K. Minami, Y. Baba, N. Kamo posted to 081002 bacteriorhodopsin mechanism proton_pathways structure by vahmurk on 2008-10-02 21:45:57 as
	Mechanism of color tuning in retinal protein: SAC-CI and QM/MM study [My Copy] Chemical Physics Letters, Vol. 414, No. 1-3. (03 October 2005), pp. 239-242. by K. Fujimoto, J. Hasegawa, S. Hayashi, S. Kato, H. Nakatsuji posted to 081002 bacteriorhodopsin light_absorption mechanism photoisomeration pigments qmmm retinal spectrum by vahmurk on 2008-10-02 21:45:04 as
	Bacteriorhodopsin [My Copy] International Review of Cytology, Vol. 187 (1999), pp. 161-202. by Janos K. Lanyi posted to bacteriorhodopsin review by vahmurk on 2008-10-02 21:41:10 as

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bacteriorhodopsin	73
structure	44
gpcr	34
mechanism	34
protein	34
retinal	32
md	30
photoisomeration	30
qmmm	30
rhodopsin	29
membrane	25
proton_pathways	24
spectrum	24
light_absorption	17
photocycle	17
081002	16
pigments	16
review	16
081006	14
isomerisation	13
method	13
lipid-bilayer	12
vision	9
conformational_changes	8
mutation	8
water	7
081218	5
excited_state	5
prediction	5
signal-transduction	5
uv	5
optical_disc	4
schiff_base	4
channel	3
nanotechnology	3
opsin_shift	3
trimer	3
081118	2
090405	2
back_isomerisation	2
charges	2
monomer	2
qm	2
switch	2
081207	1
090105	1
adaptation	1
autoisomerisation	1
channels	1
cpmd	1
dimer	1
electrostatic_interactions	1
environment_support	1
free_energy	1
gramicidin	1
j-625	1
l	1
m	1
n	1
namd	1
of	1
polyenes	1
protein-retinal_coupling	1

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