vavi's contact_map [16 articles] Export

Recent papers added to vavi's library classified by the tag contact_map. You can also see everyone's contact_map.

	Predicting interresidue contacts using templates and pathways [My Copy] Proteins: Structure, Function, and Genetics, Vol. 53, No. S6. (2003), pp. 497-502. by Yu Shao, Christopher Bystroff posted to contact_map contact_map_prediction protein by vavi on 2006-08-15 14:20:02 as along with 2 people mcbla babakap
	A contact map matching approach to protein structure similarity analysis. [My Copy] Genet Mol Res, Vol. 5, No. 2. (2006), pp. 284-308. by R. C. de Melo, C. E. Lopes, F. A. Fernandes, et al.C. H. da Silveira, M. M. Santoro, R. L. Carceroni, W. Meira, A. d. e. . A. Araújo posted to contact_map image_processing protein_similarity by vavi on 2006-08-14 15:10:44 as along with 2 people dgront mijam
	LGA: A method for finding 3D similarities in protein structures. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3370-3374. by A. Zemla posted to contact_map protein structure_comparison by vavi on 2006-08-13 14:28:27 as along with 4 people and 2 groups dfdong karbak ana analogAI structural_bioinformatics Bioinformatics
	Dynamic contact maps of protein structures [My Copy] Journal of Molecular Graphics and Modelling, Vol. 16, No. 1. (February 1998), pp. 1-5. by Erik L. Sonnhammer, John C. Wootton posted to contact_map visualization by vavi on 2006-07-17 09:25:56 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	A polynomial-time algorithm for the matching of crossing contact-map patterns [My Copy] Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 1, No. 4. (2004), pp. 171-180. by J. Gramm posted to contact_map by vavi on 2006-07-03 16:31:45 as
	A Branch-and-Reduce Algorithm for the Contact Overlap Problem [My Copy] by Wie Xie posted to contact_map contact_map_overlap by vavi on 2006-07-03 16:17:46 as
	Topology fingerprint approach to the inverse protein folding problem. [My Copy] J Mol Biol, Vol. 227, No. 1. (5 September 1992), pp. 227-238. by A. Godzik, A. Kolinski, J. Skolnick posted to contact_map by vavi on 2006-07-03 10:12:16 as along with 3 people and 2 groups ana dgront rabio structural_bioinformatics Bioinformatics
	1001 optimal PDB structure alignments: integer programming methods for finding the maximum contact map overlap. [My Copy] J Comput Biol, Vol. 11, No. 1. (2004), pp. 27-52. by A. Caprara, R. Carr, S. Istrail, G. Lancia, B. Walenz posted to contact_map contact_map_similarity structure_comparison by vavi on 2006-06-27 17:06:09 as along with 2 people and 2 groups ana carlk structural_bioinformatics Bioinformatics
	A two-stage approach for improved prediction of residue contact maps. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (30 March 2006) by Alessandro Vullo, Ian Walsh, Gianluca Pollastri posted to contact_map contact_map_prediction by vavi on 2006-06-27 15:57:12 as along with 1 person iaolier
	Reconstruction of protein structures from a vectorial representation. [My Copy] Phys Rev Lett, Vol. 92, No. 21. (28 May 2004) by M. Porto, U. Bastolla, H. E. Roman, M. Vendruscolo posted to contact_map structure_comparison structure_prediction by vavi on 2006-06-27 15:48:24 as along with 1 person dgront
	Efficient dynamics in the space of contact maps. [My Copy] Fold Des, Vol. 3, No. 5. (1998), pp. 329-336. by M. Vendruscolo, E. Domany posted to structure_prediction contact_map by vavi on 2006-06-27 15:45:31 as
	Recovery of protein structure from contact maps. [My Copy] Fold Des, Vol. 2, No. 5. (1997), pp. 295-306. by M. Vendruscolo, E. Kussell, E. Domany posted to contact_map structure_prediction by vavi on 2006-06-27 15:42:14 as along with 3 people dgront babakap mijam
	Toward an energy function for the contact map representation of proteins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 40, No. 2. (2000), pp. 237-248. by Kibeom Park, Michele Vendruscolo, Eytan Domany posted to contact_map energy by vavi on 2006-06-27 15:38:11 as
	Evolution and similarity evaluation of protein structures in contact map space. [My Copy] Proteins, Vol. 59, No. 2. (1 May 2005), pp. 196-204. by N. Gupta, N. Mangal, S. Biswas posted to contact_map_similarity structure_similarity contact_map by vavi on 2006-06-27 15:27:43 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	Ab initio modeling of small, medium, and large loops in proteins [My Copy] Peptide Science, Vol. 60, No. 2. (6 July 2001), pp. 153-168. by Stan Galaktionov, Gregory V. Nikiforovich, Garland R. Marshall posted to ab_initio contact_map loop_prediction protein by vavi on 2005-11-07 15:54:00 as
	101 optimal PDB structure alignments: a branch-and-cut algorithm for the maximum contact map overlap problem [My Copy] In RECOMB '01: Proceedings of the fifth annual international conference on Computational biology (2001), pp. 193-202. by Giuseppe Lancia, Robert Carr, Brian Walenz, Sorin Istrail posted to contact_map overlap protein structure_alignment by vavi on 2005-10-26 15:39:59 as

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protein	35
contact_map	16
structure_prediction	15
prediction	14
loop	9
loop_modeling	8
review	7
ab_initio	6
loop_prediction	6
fragments	5
structure	5
structure_comparison	4
simulated_annealing	4
molecular_dynamics	4
strutcture_prediction	4
docking	4
database	3
contact_maps	3
structure_alignment	3
monte_carlo	3
sequence_alignment	3
comparative_modeling	3
loops	3
library	2
energy	2
protein_structure	2
strucure_prediction	2
bioinformatics	2
contact_map_prediction	2
substitution	2
sequence	2
matrix	2
programming	2
server	2
classification	2
similarity	2
structure_similarity	2
contact_map_similarity	2
scoring	1
overlap	1
main-chain	1
knowledge_based	1
drug-companies	1
protein_similarity	1
argumentation	1
substitution_matrix	1
image_processing	1
angles	1
robotics	1
normal-mode-analysis	1
flexdock	1
machine_learning	1
svm	1
protein_structure_prediction	1
closeness	1
side-chain	1
survey	1
contact_map_overlap	1
visualization	1
all-atom	1
loop_analysis	1
amino	1
ranking	1
context	1
acid	1
kinematics	1
contact_matrix	1
hybrid	1
expert_knowledge	1
search	1
baker	1
eigenvector	1
pdb	1
boston	1
supersecondary_library	1
flexibility	1
structural_genomics	1
function	1
packing	1
contact_maps_use	1
residue_property	1
volume	1
rosetta	1
google	1
motivation	1
engine	1
algorithm	1
modeling	1
fiser	1
inverse_kinematics	1

vavi's contact_map [16 articles] Export

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