vavi's loop [9 articles] Export

Recent papers added to vavi's library classified by the tag loop. You can also see everyone's loop.

	ArchDB: automated protein loop classification as a tool for structural genomics. [My Copy] Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004) by J. Espadaler, N. Fernandez-Fuentes, A. Hermoso, et al.E. Querol, F. X. Aviles, M. J. Sternberg, B. Oliva posted to classification loop protein by vavi on 2006-08-06 09:06:23 as along with 2 people mijam baldo
	Modeling structurally variable regions in homologous proteins with rosetta. [My Copy] Proteins, Vol. 55, No. 3. (15 May 2004), pp. 656-677. by C. A. Rohl, C. E. Strauss, D. Chivian, D. Baker posted to baker loop prediction rosetta by vavi on 2006-05-31 14:05:20 as along with 4 people and 1 group jwm yongzhao thamelry hmk TSRI_MGL
	Protein loop structure prediction with flexible stem geometries. [My Copy] Proteins (12 October 2005) by M Mönnigmann, C A A. Floudas posted to loop protein structure_prediction by vavi on 2005-10-20 13:19:50 as along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
	PDB-based protein loop prediction: parameters for selection and methods for optimization [My Copy] Journal of Molecular Biology, Vol. 267, No. 4. (11 April 1997), pp. 975-1001. by Herman W. van Vlijmen, Martin Karplus posted to fragments library loop prediction by vavi on 2005-10-06 10:22:31 as
	A hierarchical approach to all-atom protein loop prediction. [My Copy] Proteins, Vol. 55, No. 2. (1 May 2004), pp. 351-367. by M. P. Jacobson, D. L. Pincus, C. S. Rapp, et al.T. J. Day, B. Honig, D. E. Shaw, R. A. Friesner posted to all-atom loop prediction by vavi on 2005-07-28 12:46:17 as along with 4 people and 1 group mijam yongzhao sschurer allmensch TSRI_MGL
	Improved protein loop prediction from sequence alone. [My Copy] Protein Eng, Vol. 14, No. 7. (July 2001), pp. 473-478. by D. F. Burke, C. M. Deane posted to loop prediction sequence by vavi on 2005-07-25 17:11:54 as along with 2 people j3xucite cdeane
	Modeling of loops in protein structures. [My Copy] Protein Sci, Vol. 9, No. 9. (September 2000), pp. 1753-1773. by A. Fiser, R. K. Do, A. Sali posted to loop modeling prediction by vavi on 2005-07-25 09:47:12 as along with 5 people mijam warlock6x3 ttjoseph mirzazadeh tji
	Loops In Proteins (LIP)--a comprehensive loop database for homology modelling. [My Copy] Protein Eng, Vol. 16, No. 12. (December 2003), pp. 979-985. by E. Michalsky, A. Goede, R. Preissner posted to fragments library loop prediction by vavi on 2005-07-25 09:43:05 as
	Prediction of the conformation and geometry of loops in globular proteins: Testing ArchDB, a structural classification of loops [My Copy] Proteins: Structure, Function, and Genetics (14 July 2005) by Narcis Fernandez-Fuentes, Enrique Querol, Francesc X. Aviles, Michael J. E. Sternberg, Baldomero Oliva posted to loop prediction by vavi on 2005-07-25 09:33:18 as along with 1 person baldo

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protein	35
contact_map	16
structure_prediction	15
prediction	14
loop	9
loop_modeling	8
review	7
ab_initio	6
loop_prediction	6
fragments	5
structure	5
structure_comparison	4
simulated_annealing	4
molecular_dynamics	4
strutcture_prediction	4
docking	4
database	3
contact_maps	3
structure_alignment	3
monte_carlo	3
sequence_alignment	3
comparative_modeling	3
loops	3
library	2
energy	2
protein_structure	2
strucure_prediction	2
bioinformatics	2
contact_map_prediction	2
substitution	2
sequence	2
matrix	2
programming	2
server	2
classification	2
similarity	2
structure_similarity	2
contact_map_similarity	2
scoring	1
overlap	1
main-chain	1
knowledge_based	1
drug-companies	1
protein_similarity	1
argumentation	1
substitution_matrix	1
image_processing	1
angles	1
robotics	1
normal-mode-analysis	1
flexdock	1
machine_learning	1
svm	1
protein_structure_prediction	1
closeness	1
side-chain	1
survey	1
contact_map_overlap	1
visualization	1
all-atom	1
loop_analysis	1
amino	1
ranking	1
context	1
acid	1
kinematics	1
contact_matrix	1
hybrid	1
expert_knowledge	1
search	1
baker	1
eigenvector	1
pdb	1
boston	1
supersecondary_library	1
flexibility	1
structural_genomics	1
function	1
packing	1
contact_maps_use	1
residue_property	1
volume	1
rosetta	1
google	1
motivation	1
engine	1
algorithm	1
modeling	1
fiser	1
inverse_kinematics	1

vavi's loop [9 articles] Export

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