vavi's loop_modeling [8 articles] Export Sort

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	Model for haptoglobin heavy chain based upon structural homology. [My Copy] Proc Natl Acad Sci U S A, Vol. 77, No. 6. (June 1980), pp. 3393-3397. by J. Greer posted to knowledge_based loop_modeling protein by vavi on 2006-08-06 13:21:44 as
	Analysis, clustering and prediction of the conformation of short and medium size loops connecting regular secondary structures. [My Copy] Pac Symp Biocomput (1996), pp. 570-589. by S. D. Rufino, L. E. Donate, L. Canard, T. L. Blundell posted to classification loop_modeling protein by vavi on 2006-08-06 09:11:06 as along with 1 person medic0747
	A novel exhaustive search algorithm for predicting the conformation of polypeptide segments in proteins. [My Copy] Proteins, Vol. 40, No. 1. (1 July 2000), pp. 135-144. by C. M. Deane, T. L. Blundell posted to loop_modeling protein by vavi on 2006-07-31 12:27:08 as along with 3 people thamelry medic0747 cdeane
	A divide and conquer approach to fast loop modeling [My Copy] Protein Eng., Vol. 15, No. 4. (1 April 2002), pp. 279-286. by Silvio C. Tosatto, Eckart Bindewald, Jurgen Hesser, Reinhard Manner posted to ab_initio loop_modeling protein by vavi on 2006-07-31 10:31:02 as
	Cyclic coordinate descent: A robotics algorithm for protein loop closure. [My Copy] Protein Sci, Vol. 12, No. 5. (May 2003), pp. 963-972. by A. A. Canutescu, R. L. Dunbrack posted to kinematics loop_modeling protein by vavi on 2006-07-31 10:26:25 as along with 4 people and 1 group yongzhao j3xucite dgront mijam TSRI_MGL
	Full cyclic coordinate descent: solving the protein loop closure problem in Calpha space [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (28 June 2005), 159. by Wouter Boomsma, Thomas Hamelryck posted to loop_modeling protein by vavi on 2006-07-25 16:52:24 as along with 4 people mijam cdeane pansapiens wouterboomsma
	ArchPRED: a template based loop structure prediction server [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_2. (1 July 2006), pp. W173-176. by Narcis Fernandez-Fuentes, Jun Zhai, Andras Fiser posted to fiser loop_modeling server structure_prediction by vavi on 2006-07-24 09:18:59 as along with 3 people mijam eckart_bindewald cdeane
	Evaluating conformational free energies: the colony energy and its application to the problem of loop prediction. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 11. (28 May 2002), pp. 7432-7437. by Z. Xiang, C. S. Soto, B. Honig posted to energy loop_modeling by vavi on 2006-06-25 13:48:10 as along with 2 people and 1 group tomweingarten yongzhao TSRI_MGL

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protein	35
contact_map	16
structure_prediction	15
prediction	14
loop	9
loop_modeling	8
review	7
ab_initio	6
loop_prediction	6
fragments	5
structure	5
structure_comparison	4
simulated_annealing	4
molecular_dynamics	4
strutcture_prediction	4
docking	4
database	3
contact_maps	3
structure_alignment	3
monte_carlo	3
sequence_alignment	3
comparative_modeling	3
loops	3
library	2
energy	2
protein_structure	2
strucure_prediction	2
bioinformatics	2
contact_map_prediction	2
substitution	2
sequence	2
matrix	2
programming	2
server	2
classification	2
similarity	2
structure_similarity	2
contact_map_similarity	2
scoring	1
overlap	1
main-chain	1
knowledge_based	1
drug-companies	1
protein_similarity	1
argumentation	1
substitution_matrix	1
image_processing	1
angles	1
robotics	1
normal-mode-analysis	1
flexdock	1
machine_learning	1
svm	1
protein_structure_prediction	1
closeness	1
side-chain	1
survey	1
contact_map_overlap	1
visualization	1
all-atom	1
loop_analysis	1
amino	1
ranking	1
context	1
acid	1
kinematics	1
contact_matrix	1
hybrid	1
expert_knowledge	1
search	1
baker	1
eigenvector	1
pdb	1
boston	1
supersecondary_library	1
flexibility	1
structural_genomics	1
function	1
packing	1
contact_maps_use	1
residue_property	1
volume	1
rosetta	1
google	1
motivation	1
engine	1
algorithm	1
modeling	1
fiser	1
inverse_kinematics	1

vavi's loop_modeling [8 articles] Export Sort

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