verdicchio's library 55 articles Export

	A Computational Scheme Based on Random Boolean Networks [My Copy] Transactions on Computational Systems Biology X (2008), pp. 41-58. by Elena Dubrova, Maxim Teslenko, Hannu Tenhunen posted to minsum fall09aging espresso boolean aging by verdicchio on 2009-10-23 21:32:44 as
	Simplifying Boolean Networks [My Copy] Advances in Complex Systems, Vol. 8, No. 4. (2005), pp. 365-382. by K. A. Richardson posted to minsum fall09aging espresso boolean aging by verdicchio on 2009-10-23 21:28:41 as
	On Characterization of Attractor Basins of Fuzzy Multiple Attractor Cellular Automata [My Copy] Fundam. Inf., Vol. 86, No. 1,2. (2008), pp. 143-168. by Pradipta Maji posted to minsum fall09aging espresso boolean aging by verdicchio on 2009-10-23 21:16:29 as
	How bioinformatics can help reverse engineer human aging [My Copy] Ageing Research Reviews, Vol. 3, No. 2. (April 2004), pp. 125-141. by J. Demagalhaes, O. Toussaint posted to minsum fall09aging espresso boolean aging by verdicchio on 2009-10-23 21:12:47 as along with 1 person cerca
	Qualitatively modelling and analysing genetic regulatory networks: a Petri net approach [My Copy] Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 336-343. by L. Jason Steggles, Richard Banks, Oliver Shaw, Anil Wipat posted to minsum fall09aging espresso boolean aging by verdicchio on 2009-10-23 20:52:00 as along with 4 people laurabertens guhjy bootsy alanrw
	Modularized learning of genetic interaction networks from biological annotations and mRNA expression data [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2739-2747. by Phil H. Lee, Doheon Lee posted to bayesian parallel seed by verdicchio on 2009-07-14 16:47:16 as along with 6 people beete saman_vp patrycja_missiuro naegele roys tvdbulck
	Parallel Algorithms for Bayesian Indoor Positioning Systems [My Copy] Parallel Processing, 2007. ICPP 2007. International Conference on In Parallel Processing, 2007. ICPP 2007. International Conference on (2007), pp. 15-15. by K. Kleisouris, R. P. Martin posted to bayesian parallel seed by verdicchio on 2009-07-14 16:07:57 as
	A statistical semantics for causation [My Copy] Statistics and Computing, Vol. 2, No. 2. (1 June 1992), pp. 91-95. by Judea Pearl, Thomas S. Verma posted to causal by verdicchio on 2009-03-02 20:49:38 as
	An Algorithm to Learn Causal Relations Between Genes from Steady State Data: Simulation and Its Application to Melanoma Dataset [My Copy] Artificial Intelligence in Medicine (2005), pp. 524-534. by Xin Zhang, Chitta Baral, Seungchan Kim posted to causal by verdicchio on 2009-03-02 20:48:29 as along with 1 person ruichu
	Causality [My Copy] (March 2000) by J. Pearl posted to no-tag by verdicchio on 2009-03-02 20:46:31 as along with 4 people rabriggs Kovanen phoyer josephgentet
	Reverse engineering of regulatory networks in human B cells. [My Copy] Nat Genet (20 March 2005) by Katia Basso, Adam A A. Margolin, Gustavo Stolovitzky, Ulf Klein, Riccardo Dalla-Favera, Andrea Califano posted to no-tag by verdicchio on 2009-03-02 20:45:50 as along with 12 people Neeperando akraemer ggallone snuppepuppan kentsis dragonrez jfr wnpx raiyar naegele heliopais lylu
	ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. [My Copy] BMC Bioinformatics, Vol. 7 Suppl 1 (2006) by A. A. Margolin, I. Nemenman, K. Basso, et al.C. Wiggins, G. Stolovitzky, R. Dalla Favera, A. Califano posted to aracne by verdicchio on 2009-03-02 20:43:29 as along with 17 people dolchan tonamswish Neeperando akraemer APRegier behindtherabbit kaarsinogen mbehbah1 druvus giovenko ptrobajo kentsis tmmurali jfr shigepong natstreet heliopais
	Module networks revisited: computational assessment and prioritization of model predictions [My Copy] Bioinformatics, Vol. 25, No. 4. (15 February 2009), pp. 490-496. by Anagha Joshi, Riet De Smet, Kathleen Marchal, Yves Van de Peer, Tom Michoel posted to bayesian boolean-networks gene-regulatory-network non-homogeneous by verdicchio on 2009-02-13 17:34:22 as along with 12 people ptrobajo TRHvidsten jfr guhjy tvdbulck mhamada roys zufar rdiaz druvus imina dolchan
	Validation of Inference Procedures for Gene Regulatory Networks [My Copy] Current Genomics, Vol. 8, No. 6. (September 2007), pp. 351-359. by Dougherty, R. Edward posted to distance gene-regulatory-network grn journal metrics model steady-state by verdicchio on 2009-01-27 20:19:34 as
	Context-Specific Gene Regulations in Cancer Gene Expression Data [My Copy] In Pacific Symposium on Biocomputing, Vol. 14 (2009), pp. 75-86. by Ina Sen, Michael P. Verdicchio, Sungwon Jung, Robert Trevino, Michael Bittner, Seungchan Kim posted to bayesian cancer conditioning context gene-regulatory-network grn h-core heterogeneous non-homogeneous sysbio by verdicchio on 2009-01-23 19:34:50 as
	From Boolean to probabilistic Boolean networks as models of genetic regulatory networks [My Copy] Proceedings of the IEEE In Proceedings of the IEEE, Vol. 90, No. 11. (2002), pp. 1778-1792. by I. Shmulevich, E. R. Dougherty, Wei Zhang posted to no-tag by verdicchio on 2008-11-24 21:54:57 as along with 2 people kentz genomic_fpga
	Partitioned mixture distribution: an adaptive Bayesian network for low-level image processing [My Copy] Vision, Image and Signal Processing, IEE Proceedings - In Vision, Image and Signal Processing, IEE Proceedings -, Vol. 141, No. 4. (1994), pp. 251-260. by S. P. Luttrell posted to no-tag by verdicchio on 2008-11-24 17:14:08 as
	Learning mixtures of Bayesian networks [My Copy] In in Cooper & Moral (1998) by Bo Thiesson, Christopher Meek, David M. Chickering, David Heckerman posted to no-tag by verdicchio on 2008-11-24 17:13:25 as
	Learning the structure of dynamic Bayesian networks from time series and steady state measurements [My Copy] Machine Learning, Vol. 71, No. 2. (26 June 2008), pp. 185-217. by Harri Lähdesmäki, Ilya Shmulevich posted to bayesian dbn dynamic-bayesian-networks steady-state time-series by verdicchio on 2008-11-21 12:56:31 as along with 3 people gchan02 danielkcook jjrodriguez
	Dynamic bayesian networks : representation, inference and learning [My Copy] (2002) by Kevin P. Murphy posted to dbn dynamic-bayesian-networks by verdicchio on 2008-11-19 17:50:14 as
	Modelling gene expression data using dynamic bayesian networks [My Copy] (1999) by Kevin Murphy, Saira Mian posted to dbn dynamic-bayesian-networks gene-regulatory-network grn by verdicchio on 2008-11-19 17:48:08 as along with 1 person czeller
	Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks [My Copy] Signal Processing, Vol. 86, No. 4. (April 2006), pp. 814-834. by H. Lahdesmaki, S. Hautaniemi, I. Shmulevich, O. Yliharja posted to boolean-networks dbn dynamic-bayesian-networks gene-regulatory-network grn pbn probabilistic-boolean-networks by verdicchio on 2008-11-19 17:46:18 as
	Bayesian Network Structure Ensemble Learning [My Copy] Advanced Data Mining and Applications (2007), pp. 454-465. by Feng Liu, Fengzhan Tian, Qiliang Zhu posted to bayesian mixture sample-decomposition by verdicchio on 2008-11-12 17:39:23 as
	Metabolic stability and epigenesis in randomly constructed genetic nets [My Copy] Journal of Theoretical Biology, Vol. 22, No. 3. (March 1969), pp. 437-467. by S. Kauffman posted to boolean-networks by verdicchio on 2008-11-10 22:14:18 as along with 6 people Dangerfc tomhebbron kinop eldan wnpx gcalda
	Bayesian Modelling and Inference on Mixtures of Distributions [My Copy] Handbook of Statistics, pp. 15840-15845. by M/ J. Marin, K. Mengerson, C. P. Robert posted to bayesian heterogeneous mixture model non-homogeneous by verdicchio on 2008-11-08 01:26:32 as along with 1 person khachsar
	Bayesian finite mixtures: a note on prior specification and posterior computation [My Copy] (2005) by Agostino Nobile posted to bayesian heterogeneous mixture by verdicchio on 2008-11-06 19:19:30 as
	Bayesian finite mixtures with an unknown number of components: The allocation sampler [My Copy] Statistics and Computing, Vol. 17, No. 2. (June 2007), pp. 147-162. by Nobile, Agostino, Fearnside, Alastair posted to bayesian heterogeneous by verdicchio on 2008-11-06 19:07:38 as
	The KEGG databases at GenomeNet [My Copy] Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 42-46. by Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Akihiro Nakaya posted to no-tag by verdicchio on 2008-10-06 21:25:50 as along with 3 people opheliav michC dragonrez
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by Michael Ashburner, Catherine A. Ball, Judith A. Blake, et al.David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, Kara Dolinski, Selina S. Dwight, Janan T. Eppig, Midori A. Harris, David P. Hill, Laurie Issel-Tarver, Andrew Kasarskis, Suzanna Lewis, John C. Matese, Joel E. Richardson, Martin Ringwald, Gerald M. Rubin, Gavin Sherlock posted to no-tag by verdicchio on 2008-10-06 21:23:49 as along with 71 people and 7 groups niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder raistrick vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele CitoJam pablomendes carlk marck dgront roys rvosa fongenae BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab biomedical-nlp FAB-lab
	GoMiner: a resource for biological interpretation of genomic and proteomic data [My Copy] Genome Biology, Vol. 4, No. 4. (2003), R28. by Barry Zeeberg, Weimin Feng, Geoffrey Wang, et al.May Wang, Anthony Fojo, Margot Sunshine, Sudarshan Narasimhan, David Kane, William Reinhold, Samir Lababidi, Kimberly Bussey, Joseph Riss, J. Barrett, John Weinstein posted to go by verdicchio on 2008-10-03 00:38:22 as along with 4 people jperkins vkwn Garamonfok waghsk
	High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID) [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Barry Zeeberg, Haiying Qin, Sudarshan Narasimhan, et al.Margot Sunshine, Hong Cao, David Kane, Mark Reimers, Robert Stephens, David Bryant, Stanley Burt, Eldad Elnekave, Danielle Hari, Thomas Wynn, Charlotte C. Rundles, Donn Stewart, David Nelson, John Weinstein posted to go by verdicchio on 2008-10-03 00:30:13 as
	H-CORE: Enabling genome-scale Bayesian analysis of biological systems without prior knowledge. [My Copy] Biosystems, Vol. 90, No. 1. (g 2007), pp. 197-210. by S. Jung, K. H. Lee, D. Lee posted to bayesian h-core knowledge by verdicchio on 2008-09-16 19:36:44 as along with 1 person guhjy
	Conditioning-Based Modeling of Contextual Genomic Regulation [My Copy] Computational Biology and Bioinformatics, IEEE/ACM Transactions on : Accepted for future publication (2008) by Edward Dougherty, Marcel Brun, Jeffrey Trent, Michael Bittner posted to conditioning context model by verdicchio on 2008-09-16 19:11:09 as
	Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler [My Copy] Bioinformatics, Vol. 24, No. 18. (15 September 2008), pp. 2071-2078. by Marco Grzegorczyk, Dirk Husmeier, Kieron D. Edwards, Peter Ghazal, Andrew J. Millar posted to bayesian non-homogeneous by verdicchio on 2008-09-15 20:21:06 as along with 1 person isimpson
	Clustering protein sequences--structure prediction by transitive homology [My Copy] Bioinformatics, Vol. 17, No. 10. (1 October 2001), pp. 935-941. by Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader posted to no-tag by verdicchio on 2008-09-10 23:58:33 as along with 3 people yuslinaz dgront rabio
	Microarray data analysis: from disarray to consolidation and consensus. [My Copy] Nature reviews. Genetics, Vol. 7, No. 1. (01 January 2006), pp. 55-65. by David B. Allison, Xiangqin Cui, Grier P. Page, Mahyar Sabripour posted to csbstudy by verdicchio on 2008-09-10 20:17:33 as along with 31 people and 3 groups stharward antonkratz ipark-kaist svozil bertelsen Stew daforerog winterschlaefer guhjy barry textoris jfr Ayest balicea sterovetta lhonigberg acidwizard ronaldozhou vpschulz rmk schuylrp Garamonfok debasis GeeSharpMinor dimatura heliopais shikin minostro giovenko jo_davies aviad_work Bioinformatics - CRUK structural_bioinformatics Bioinformatics
	Senescent fibroblasts promote epithelial cell growth and tumorigenesis: a link between cancer and aging. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 21. (9 October 2001), pp. 12072-12077. by A. Krtolica, S. Parrinello, S. Lockett, P. Y. Desprez, J. Campisi posted to aging cancer by verdicchio on 2008-09-09 20:17:37 as
	Senescent Cells, Tumor Suppression, and Organismal Aging: Good Citizens, Bad Neighbors [My Copy] Cell, Vol. 120 (2005), pp. 513-522. by Judith Campisi posted to aging cancer by verdicchio on 2008-09-09 20:15:39 as
	Inference of Boolean Networks Using Sensitivity Regularization [My Copy] EURASIP Journal on Bioinformatics and Systems Biology, Vol. 2008 (2008) by Wenbin Liu, Harri Lähdesmäki, Edward R. Dougherty, Ilya Shmulevich posted to monitoring by verdicchio on 2008-09-08 22:55:27 as
	Gene Regulatory Network Reconstruction Using Conditional Mutual Information [My Copy] EURASIP Journal on Bioinformatics and Systems Biology, Vol. 2008 (2008) by Kuo-Ching Liang, Xiaodong Wang posted to monitoring by verdicchio on 2008-09-08 22:54:28 as
	Recovering Genetic Regulatory Networks from Chromatin Immunoprecipitation and Steady-State Microarray Data [My Copy] EURASIP Journal on Bioinformatics and Systems Biology, Vol. 2008 (2008) by Wentao Zhao, Erchin Serpedin, Edward R. Dougherty posted to monitoring by verdicchio on 2008-09-08 22:52:56 as
	Uncovering Gene Regulatory Networks from Time-Series Microarray Data with Variational Bayesian Structural Expectation Maximization [My Copy] EURASIP Journal on Bioinformatics and Systems Biology, Vol. 2007 (2007) by Isabel T. Luna, Yufei Huang, Yufang Yin, Diego, Carmen posted to journal monitoring by verdicchio on 2008-09-08 22:47:29 as
	Inference of a Probabilistic Boolean Network from a Single Observed Temporal Sequence [My Copy] EURASIP Journal on Bioinformatics and Systems Biology, Vol. 2007 (2007) by Stephen Marshall, Le Yu, Yufei Xiao, Edward R. Dougherty posted to journal monitoring by verdicchio on 2008-09-08 22:43:45 as
	Algorithms for Finding Small Attractors in Boolean Networks [My Copy] EURASIP Journal on Bioinformatics and Systems Biology, Vol. 2007 (2007) by Shu-Qin Zhang, Morihiro Hayashida, Tatsuya Akutsu, Wai-Ki Ching, Michael K. Ng posted to no-tag by verdicchio on 2008-09-08 22:41:26 as
	Normalization Benefits Microarray-Based Classification [My Copy] EURASIP Journal on Bioinformatics and Systems Biology, Vol. 2006 (2006) by Jianping Hua, Yoganand Balagurunathan, Yidong Chen, et al.James Lowey, Michael L. Bittner, Zixiang Xiong, Edward Suh, Edward R. Dougherty posted to journal monitoring by verdicchio on 2008-09-08 22:39:55 as
	Learning and Validating Bayesian Network Models of Gene Networks [My Copy] Advances in Probabilistic Graphical Models (2007), pp. 359-375. by Jose Peña, Johan Björkegren, Jesper Tegnér posted to no-tag by verdicchio on 2008-09-05 00:40:26 as
	A nonlinear discrete dynamical model for transcriptional regulation: construction and properties. [My Copy] Biophys J, Vol. 86, No. 4. (April 2004), pp. 1922-1945. by J. Goutsias, S. Kim posted to no-tag by verdicchio on 2008-08-22 18:49:06 as along with 2 people and 1 group camster aramesh2 dbk-lab
	Stochastic Transcriptional Regulatory Systems with Time Delays: A Mean-Field Approximation [My Copy] Journal of Computational Biology, Vol. 13, No. 5. (2006), pp. 1049-1076. by John Goutsias, Seungchan Kim posted to no-tag by verdicchio on 2008-08-22 18:48:32 as along with 2 people behindtherabbit Borelli
	Mfuzz: A software package for soft clustering of microarray data. [My Copy] Bioinformation, Vol. 2, No. 1. (2007), pp. 5-7. by L. Kumar, M. E Futschik posted to no-tag by verdicchio on 2008-08-21 18:50:07 as
	Noise-robust soft clustering of gene expression time-course data. [My Copy] Journal of bioinformatics and computational biology, Vol. 3, No. 4. (August 2005), pp. 965-988. by M. E. Futschik, B. Carlisle posted to no-tag by verdicchio on 2008-08-21 18:49:04 as

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