vingron's library 34 articles Export

	Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 289-293. by Erez Lieberman-Aiden, Nynke L. van Berkum, Louise Williams, et al.Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R. Lajoie, Peter J. Sabo, Michael O. Dorschner, Richard Sandstrom, Bradley Bernstein, M. A. Bender, Mark Groudine, Andreas Gnirke, John Stamatoyannopoulos, Leonid A. Mirny, Eric S. Lander, Job Dekker posted to no-tag by vingron on 2009-11-24 06:29:22 as along with 32 people and 3 groups pmcarlton alhufton psique qayub chvlyl TorstenWaldminghaus kintoki Garamonfok inesdesantiago NickFurnham DrRichardBadge roys rdiaz daveGerrard colinveal frohike nrk891 zwang timflutre afenley kshameer polivares mgatmedsci diamantis flbarroso jdoconnell fenghezi daforerog bpcusack gjuggler gdb gbloeb JLab BergmanLab Journal picks
	Systems genetics of complex traits in Drosophila melanogaster [My Copy] Nature Genetics, Vol. 41, No. 3. (22 February 2009), pp. 299-307. by Julien F. Ayroles, Mary A. Carbone, Eric A. Stone, et al.Katherine W. Jordan, Richard F. Lyman, Michael M. Magwire, Stephanie M. Rollmann, Laura H. Duncan, Faye Lawrence, Robert R. H. Anholt, Trudy F. C. Mackay posted to no-tag by vingron on 2009-11-24 06:27:11 as along with 16 people and 2 groups daveGerrard ongenetics timflutre FuncGen thokall bernadettgaal dpollard semrich roys rdiaz fenghezi emptyhb bertrandservin daforerog provero djkt BergmanLab RockmanLab
	A genome-wide RNAi screen for modifiers of the circadian clock in human cells. [My Copy] Cell, Vol. 139, No. 1. (2 October 2009), pp. 199-210. by Eric E. Zhang, Andrew C. Liu, Tsuyoshi Hirota, et al.Loren J. Miraglia, Genevieve Welch, Pagkapol Y. Pongsawakul, Xianzhong Liu, Ann Atwood, Jon W. Huss, Jeff Janes, Andrew I. Su, John B. Hogenesch, Steve A. Kay posted to no-tag by vingron on 2009-11-23 15:02:44 as along with 3 people samubernard ashrafsanju leliavski
	Genome-scale RNAi profiling of cell division in human tissue culture cells [My Copy] Nature Cell Biology, Vol. 9, No. 12. (11 November 2007), pp. 1401-1412. by Ralf Kittler, Laurence Pelletier, Anne-Kristine Heninger, et al.Mikolaj Slabicki, Mirko Theis, Lukasz Miroslaw, Ina Poser, Steffen Lawo, Hannes Grabner, Karol Kozak, Jan Wagner, Vineeth Surendranath, Constance Richter, Wayne Bowen, Aimee L. Jackson, Bianca Habermann, Anthony A. Hyman, Frank Buchholz posted to no-tag by vingron on 2009-11-23 13:29:53 as along with 2 people guhjy janasont
	Genome-wide transcriptional analysis of the human cell cycle identifies genes differentially regulated in normal and cancer cells [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 3. (22 January 2008), pp. 955-960. by Ziv Bar-Joseph, Zahava Siegfried, Michael Brandeis, et al.Benedikt Brors, Yong Lu, Roland Eils, Brian D. Dynlacht, Itamar Simon posted to no-tag by vingron on 2009-11-23 13:23:43 as along with 7 people emptyhb guhjy cjeans aconesa renatomilani mclarenv gracio
	Periodic Transcription: A Cycle within a Cycle [My Copy] Current Biology, Vol. 13, No. 1. (08 January 2003), pp. R31-R38. by Linda L. Breeden posted to no-tag by vingron on 2009-11-22 09:28:17 as
	Connecting protein structure with predictions of regulatory sites [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 17. (24 April 2007), pp. 7068-7073. by Alexandre V. Morozov, Eric D. Siggia posted to no-tag by vingron on 2009-11-22 07:30:49 as along with 7 people and 2 groups nklee maximilianh ana aalibes kaarsinogen johncumbers lusk structural_bioinformatics Bioinformatics
	Approximate Likelihood-Ratio Test for Branches: A Fast, Accurate, and Powerful Alternative [My Copy] Syst Biol, Vol. 55, No. 4. (1 August 2006), pp. 539-552. by Maria Anisimova, Olivier Gascuel posted to no-tag by vingron on 2009-11-13 14:01:26 as along with 3 people druvus polpotak redelings
	Integrated Assessment and Prediction of Transcription Factor Binding [My Copy] PLoS Comput Biol, Vol. 2, No. 6. (16 June 2006), e70. by Andreas Beyer, Christopher Workman, Jens Hollunder, et al.Dörte Radke, Ulrich Möller, Thomas Wilhelm, Trey Ideker posted to no-tag by vingron on 2009-11-05 20:04:30 as along with 10 people and 1 group HawkinsJohnC ajbattle nklee jfr balajis wnpx emilyhare samal reidy Ao_Li2007 EisenLab
	BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data [My Copy] Mol Biol Evol, Vol. 14, No. 7. (1 July 1997), pp. 685-695. by O. Gascuel posted to no-tag by vingron on 2009-11-03 21:03:54 as along with 6 people BioNica lizbiogen timflutre swp09 Haggan matsen
	Neighbor-Joining Revealed [My Copy] Mol Biol Evol, Vol. 23, No. 11. (1 November 2006), pp. 1997-2000. by Olivier Gascuel, Mike Steel posted to no-tag by vingron on 2009-11-03 20:15:00 as along with 4 people vtraag tny rhyax ArtemPankin
	An ensemble model of competitive multi-factor binding of the genome [My Copy] Genome Research, Vol. 19, No. 11. (31 November 2009), pp. 2101-2112. by Todd Wasson, Alexander J. Hartemink posted to no-tag by vingron on 2009-11-02 15:58:57 as along with 6 people djkt megraw xianjun owhitney bpcusack natstreet
	Distinguishing direct versus indirect transcription factorâDNA interactions [My Copy] Genome Research, Vol. 19, No. 11. (3 November 2009), pp. 2090-2100. by Raluca GordÃ¢n, Alexander J. Hartemink, Martha L. Bulyk posted to no-tag by vingron on 2009-11-02 15:58:07 as along with 11 people oannes nklee djkt venancio owhitney tmmurali emptyhb idonaldson maximilianh jbhiatt frohike
	A general modular framework for gene set enrichment analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (03 February 2009), 47. by Marit Ackermann, Korbinian Strimmer posted to no-tag by vingron on 2009-10-23 13:26:45 as along with 17 people and 1 group ptrobajo zufar srp33 dipenps shikin arjun_citeulike guhjy pk506 aviad_work thomaskelder ydhwang rdiaz kshameer renatomilani dswan cmzmasek RamuAnandakrishnan Bioinformatics
	Sparse non-negative matrix factorizations via alternating non-negativity-constrained least squares for microarray data analysis [My Copy] Bioinformatics, Vol. 23, No. 12. (15 June 2007), pp. 1495-1502. by Hyunsoo Kim, Haesun Park posted to no-tag by vingron on 2009-10-22 16:16:27 as along with 7 people nliu82 engelhardt svozil tmmurali dragonrez aviad_work shigepong
	Biclustering of gene expression data by non-smooth non-negative matrix factorization [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006), 78. by Pedro C. Saez, Roberto P. Marqui, F. Tirado, Jose Carazo, Alberto P. Montano posted to no-tag by vingron on 2009-10-22 15:27:23 as along with 4 people jfr pliz dps aviad_work
	Tissue-specific transcriptional regulation has diverged significantly between human and mouse. [My Copy] Nature genetics, Vol. 39, No. 6. (21 June 2007), pp. 730-732. by Duncan T. Odom, Robin D. Dowell, Elizabeth S. Jacobsen, et al.William Gordon, Timothy W. Danford, Kenzie D. MacIsaac, P. Alexander Rolfe, Caitlin M. Conboy, David K. Gifford, Ernest Fraenkel posted to transcription_factors by vingron on 2009-10-19 17:34:06 as along with 13 people and 4 groups ajaymalik fenghezi dpollard gpalidwor dchughes cwbrown djkt cjeans maximilianh fpattyn caseybrown yevishere gdb EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
	Limitations and possibilities of small RNA digital gene expression profiling [My Copy] Nat Meth, Vol. 6, No. 7. (01 July 2009), pp. 474-476. by Sam E. V. Linsen, Elzo de Wit, Georges Janssens, et al.Sheila Heater, Laura Chapman, Rachael K. Parkin, Brian Fritz, Stacia K. Wyman, Ewart de Bruijn, Emile E. Voest, Scott Kuersten, Muneesh Tewari, Edwin Cuppen posted to no-tag by vingron on 2009-10-19 14:34:10 as along with 7 people and 2 groups pengchy guhjy lp2 timhubbard stajich gdb fpattyn RGASP Mycology
	Conservation and evolvability in regulatory networks: The evolution of ribosomal regulation in yeast [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 20. (17 May 2005), pp. 7203-7208. by Amos Tanay, Aviv Regev, Ron Shamir posted to no-tag by vingron on 2009-10-19 14:24:25 as along with 3 people and 1 group roys Schmidtc carlk Bioinformatics
	Systems biology for cancer. [My Copy] Current opinion in oncology, Vol. 17, No. 1. (January 2005), pp. 44-48. by I. G. Khalil, C. Hill posted to no-tag by vingron on 2009-10-18 18:13:08 as along with 4 people and 1 group Borelli tonamswish wnpx shikin GeneGo
	Building the Spine: The Vertebrate Segmentation Clock [My Copy] Cold Spring Harbor Symposia on Quantitative Biology, Vol. 72 (1 January 2007), pp. 445-449. by O. PourquiÃ© posted to no-tag by vingron on 2009-10-18 15:58:11 as
	Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data [My Copy] Genome Biology, Vol. 10, No. 7. (22 July 2009), R79. by Piotr Balwierz, Piero Carninci, Carsten Daub, et al.Jun Kawai, Yoshihide Hayashizaki, Werner Van Belle, Christian Beisel, Erik van Nimwegen posted to no-tag by vingron on 2009-10-16 13:34:56 as along with 7 people orzenil ptrobajo maximilianh inesdesantiago djkt guhjy dolchan
	High-throughput chromatin information enables accurate tissue-specific prediction of transcription factor binding sites. [My Copy] Nucleic acids research, Vol. 37, No. 1. (1 January 2009), pp. 14-25. by Tom Whitington, Andrew C. Perkins, Timothy L. Bailey posted to no-tag by vingron on 2009-10-16 09:42:12 as along with 7 people akundaje inesdesantiago polivares lptolik WanderingAengus xili03 maximilianh
	Protein-DNA interactions: a structural analysis [My Copy] Journal of Molecular Biology, Vol. 287, No. 5. (16 April 1999), pp. 877-896. by S. Jones posted to no-tag by vingron on 2009-10-13 14:49:50 as along with 3 people semin kaarsinogen medic0747
	Cooperative binding of two acetylation marks on a histone tail by a single bromodomain [My Copy] Nature, Vol. 461, No. 7264. (01 October 2009), pp. 664-668. by Jeanne Moriniere, Sophie Rousseaux, Ulrich Steuerwald, et al.Montserrat Soler-Lopez, Sandrine Curtet, Anne-Laure Vitte, Jerome Govin, Jonathan Gaucher, Karin Sadoul, Darren J. Hart, Jeroen Krijgsveld, Saadi Khochbin, Christoph W. Muller, Carlo Petosa posted to structure chromatin by vingron on 2009-10-01 21:29:00 as along with 1 person fenghezi
	Direct RNA sequencing. [My Copy] Nature, Vol. 461, No. 7265. (8 October 2009), pp. 814-818. by Fatih Ozsolak, Adam R. Platt, Dan R. Jones, et al.Jeffrey G. Reifenberger, Lauryn E. Sass, Peter McInerney, John F. Thompson, Jayson Bowers, Mirna Jarosz, Patrice M. Milos posted to sequencing by vingron on 2009-10-01 21:24:10 as along with 20 people and 2 groups pmalkus hzoltan manduca gotgenes jwfoley GeeSharpMinor mlc39 colinveal reyez TRHvidsten djkt ppgardne dchughes heliopais nzm n00c lp2 toni_marco dswan kinestetika Journal picks Bioinformatics - CRUK
	A modular approach for integrative analysis of large-scale gene-expression and drug-response data [My Copy] Nat Biotech, Vol. 26, No. 5. (08 May 2008), pp. 531-539. by Zoltan Kutalik, Jacques S. Beckmann, Sven Bergmann posted to map connectivity by vingron on 2009-10-01 09:21:25 as along with 10 people zufar TRHvidsten mingzhi guhjy aviad_work jfr stringertheory tmmurali oelemento ptrobajo
	A phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site prediction [My Copy] Bioinformatics, Vol. 23, No. 14. (15 July 2007), pp. 1718-1727. by Lee A. Newberg, William A. Thompson, Sean Conlan, Thomas M. Smith, Lee A. McCue, Charles E. Lawrence posted to motif finding by vingron on 2009-09-30 07:45:29 as along with 7 people and 1 group operon Dulce Mehlhorn dpollard cjeans sconlan siebert EisenLab
	A graph-based approach to systematically reconstruct human transcriptional regulatory modules [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i577-586. by Xifeng Yan, Michael R. Mehan, Yu Huang, Michael S. Waterman, Philip S. Yu, Xianghong J. Zhou posted to no-tag by vingron on 2009-09-17 13:57:46 as along with 7 people kengg cswinburne jiny jfr shigepong dragonrez tmmurali
	Deciphering transcriptional regulatory elements that encode specific cell cycle phasing by comparative genomics analysis. [My Copy] Cell cycle (Georgetown, Tex.), Vol. 4, No. 12. (December 2005), pp. 1788-1797. by C. Linhart, R. Elkon, Y. Shiloh, R. Shamir posted to cell cycle factors transcription by vingron on 2009-07-19 07:27:44 as
	Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells. [My Copy] Genome research, Vol. 13, No. 5. (May 2003), pp. 773-780. by R. Elkon, C. Linhart, R. Sharan, R. Shamir, Y. Shiloh posted to cell cycle factors transcription by vingron on 2009-07-19 07:22:52 as
	Computational identification of the normal and perturbed genetic networks involved in myeloid differentiation and acute promyelocytic leukemia [My Copy] Genome Biology, Vol. 9, No. 2. (21 February 2008), R38. by Li W. Chang, Jacqueline Payton, Wenlin Yuan, Timothy Ley, Rakesh Nagarajan, Gary Stormo posted to networks by vingron on 2009-07-18 09:54:58 as along with 4 people and 1 group dragonrez grahamc aubinhon ptrobajo Integrative_biology_behavior
	Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees [My Copy] Science, Vol. 324, No. 5934. (19 June 2009), pp. 1561-1564. by Kevin Liu, Sindhu Raghavan, Serita Nelesen, C. Randal Linder, Tandy Warnow posted to no-tag by vingron on 2009-06-28 10:19:11 as along with 26 people and 4 groups gjuggler parnell kinestetika robertrentzsch xianjun gdb jbhiatt stajich operon biomcgary kieran101 zwang michaelbarton tatman303 hryk lizbiogen pkonings ppgardne dokky aprasad timflutre inquil TRHvidsten djkt fenghezi phoenixzxl Orengo Group Journal Picks Mycology Journal picks iSEEM
	Stochastic modelling for quantitative description of heterogeneous biological systems [My Copy] Nature Reviews Genetics, Vol. 10, No. 2. (01 February 2009), pp. 122-133. by Darren J. Wilkinson posted to no-tag by vingron on 2009-06-28 10:10:36 as along with 12 people and 1 group pjmaybank pkm mhellmann dah paulschlesinger jbhiatt guhjy tinatoni rdiaz Zephyrus xingxu misonneh Roswell Cancer Crosstalk