vkwn's library 182 articles Export

	Biodynamic ontology: applying BFO in the biomedical domain. [My Copy] Studies in Health Technology and Informatics, Vol. 102 (2004), pp. 20-38. by P. Grenon, B. Smith, L. Goldberg posted to ontology methods by vkwn on 2009-11-07 16:24:07 as along with 1 person PunkRock
	Mistakes in medical ontologies: where do they come from and how can they be detected? [My Copy] Stud Health Technol Inform. (2004) by W. Ceusters, B. Smith, A. Kumar, C. Dhaen posted to ontology methods by vkwn on 2009-11-07 16:08:18 as along with 1 person ichbins81
	A terminological and ontological analysis of the NCI Thesaurus. [My Copy] Methods of information in medicine, Vol. 44, No. 4. (2005), pp. 498-507. by W. Ceusters, B. Smith, L. Goldberg posted to thesaurus ontology formal by vkwn on 2009-11-06 13:12:24 as
	Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies [My Copy] Artificial Intelligence in Medicine, Vol. 39, No. 3. (19 March 2007), pp. 183-195. by O. Bodenreider, B. Smith, A. Kumar, A. Burgun posted to ontology logic formal description by vkwn on 2009-11-06 10:37:18 as along with 1 person hoganwr
	TGF-beta signaling proteins and the Protein Ontology [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 5. (2009), S3. by Cecilia Arighi, Hongfang Liu, Darren Natale, et al.Winona Barker, Harold Drabkin, Judith Blake, Barry Smith, Cathy Wu posted to protein ontology formal by vkwn on 2009-11-06 09:15:08 as along with 1 person guhjy
	Functional Analysis [My Copy] The Journal of Philosophy, Vol. 72, No. 20. (1975), pp. 741-765. by Robert Cummins posted to function analysis by vkwn on 2009-10-04 18:19:59 as
	In Defense of Proper Functions [My Copy] Philosophy of Science, Vol. 56, No. 2. (1989), pp. 288-302. by Ruth G. Millikan posted to function analysis by vkwn on 2009-10-04 18:18:21 as
	Functions as Selected Effects: The Conceptual Analyst's Defense [My Copy] Philosophy of Science, Vol. 58, No. 2. (1991), pp. 168-184. by Karen Neander posted to function analysis by vkwn on 2009-10-04 18:16:32 as
	Functional Analysis and Proper Functions [My Copy] British Journal for the Philosophy of Science, Vol. 44, No. 3. (1 September 1993), pp. 409-422. by Paul E. Griffiths posted to function analysis by vkwn on 2009-10-04 18:15:00 as
	Function without purpose [My Copy] Biology and Philosophy, Vol. 9, No. 4. (1 October 1994), pp. 443-469. by Ron Amundson, George V. Lauder posted to function analysis by vkwn on 2009-10-04 18:13:19 as
	Functional Complexity in Organisms: Parts as Proxies [My Copy] Biology and Philosophy, Vol. 15, No. 5. (1 November 2000), pp. 641-668. by Daniel W. McShea posted to complexity by vkwn on 2009-10-03 12:22:10 as
	Systems of ordering data [My Copy] Biology and Philosophy, Vol. 10, No. 4. (1 October 1995), pp. 419-434. by Ernst Mayr posted to taxonomy classification by vkwn on 2009-10-02 10:21:44 as along with 1 person Scis0000002
	Systematics and the Darwinian Revolution [My Copy] Philosophy of Science, Vol. 55, No. 2. (1988), pp. 238-259. by Kevin de Queiroz posted to taxonomy systematics classification by vkwn on 2009-10-01 10:20:30 as
	Classifications and other ordering systems [My Copy] Journal of Zoological Systematics & Evolutionary Research, Vol. 40, No. 4. (2002), pp. 169-194. by Ernst Mayr, W. J. Bock posted to zoology classification by vkwn on 2009-10-01 08:55:16 as
	How to make oneself nature's spokesman? A latourian account of classification in eighteenth- and early nineteenth-century natural history [My Copy] Biology and Philosophy, Vol. 8, No. 2. (1 April 1993), pp. 193-223. by Dirk Stemerding posted to philosophy history classification by vkwn on 2009-10-01 08:54:55 as
	Gene-expression profiles in hereditary breast cancer. [My Copy] The New England journal of medicine, Vol. 344, No. 8. (22 February 2001), pp. 539-548. by I. Hedenfalk, D. Duggan, Y. Chen, et al.M. Radmacher, M. Bittner, R. Simon, P. Meltzer, B. Gusterson, M. Esteller, O. P. Kallioniemi, B. Wilfond, A. Borg, J. Trent, M. Raffeld, Z. Yakhini, A. Ben-Dor, E. Dougherty, J. Kononen, L. Bubendorf, W. Fehrle, S. Pittaluga, S. Gruvberger, N. Loman, O. Johannsson, H. Olsson, G. Sauter posted to genetics classification by vkwn on 2009-09-28 15:03:46 as along with 3 people srp33 jfr frohike
	DNA Barcoding: Promise and Pitfalls [My Copy] PLoS Biol, Vol. 2, No. 10. (28 September 2004), e354. by Craig Moritz, Carla Cicero posted to taxonomy genetics biology by vkwn on 2009-09-28 14:24:54 as along with 1 person andrezabolzan
	Gene Trees and Species Trees: Molecular Systematics as One-Character Taxonomy [My Copy] Systematic Botany, Vol. 17, No. 1. (1992), pp. 144-163. by Jeff J. Doyle posted to taxonomy genetics by vkwn on 2009-09-28 14:10:00 as
	Biological identifications through DNA barcodes. [My Copy] Proceedings. Biological sciences / The Royal Society, Vol. 270, No. 1512. (7 February 2003), pp. 313-321. by Paul D. Hebert, Alina Cywinska, Shelley L. Ball, Jeremy R. deWaard posted to genetics classification biology by vkwn on 2009-09-28 13:43:27 as along with 5 people jhorton1 vprieto andrezabolzan dchughes emmahe
	Review: Linnaeus's Bibliotheca Botanica [My Copy] Taxon, Vol. 19, No. 3. (1970), pp. 363-411. by John L. Heller posted to taxonomy biology by vkwn on 2009-09-28 13:38:02 as
	Cladistic Analysis and Synthesis: Principles and Definitions, with a Historical Note on Adanson's Familles des plantes (1763-1764) [My Copy] Systematic Zoology, Vol. 28, No. 1. (1979), pp. 1-21. by Gareth Nelson posted to taxonomy biology by vkwn on 2009-09-28 13:37:22 as
	Ordering Systems [My Copy] Science, Vol. 266, No. 5186. (04 November 1994), pp. 715-716. by E. Mayr posted to taxonomy classification biology by vkwn on 2009-09-21 15:50:13 as
	Classification schemes for protein structure and function [My Copy] Nature Reviews Genetics, Vol. 4, No. 7. (01 July 2003), pp. 508-519. by Christos A. Ouzounis, Richard M. R. Coulson, Anton J. Enright, Victor Kunin, Jose B. Pereira-Leal posted to proteins classification biology by vkwn on 2009-09-21 09:21:00 as along with 2 people and 1 group shwu bootsy MuraLab
	Biological classification: towards a synthesis of opposing methodologies [My Copy] Science, Vol. 214 (1981), pp. 510-516. by E. Mayr posted to classification biology by vkwn on 2009-09-17 16:36:11 as
	Theory of biological classification [My Copy] Nature, Vol. 220, No. 5167. (1968), 545. by E. Mayr posted to classification biology by vkwn on 2009-09-17 16:34:28 as
	Cladistic classification and functional explanation [My Copy] Philosophy of Science, Vol. 61, No. 2. (1994), pp. 206-227. by P. E. Griffiths posted to classification biology by vkwn on 2009-09-17 16:32:51 as
	Charles Darwin's views of classification in theory and practice [My Copy] Systematic Biology, Vol. 48, No. 2. (1999), pp. 352-364. by K. Padian posted to classification biology by vkwn on 2009-09-17 16:31:04 as
	GOstat: find statistically overrepresented Gene Ontologies within a group of genes [My Copy] Bioinformatics, Vol. 20, No. 9. (12 June 2004), pp. 1464-1465. by Tim Beissbarth, Terence P. Speed posted to ontology bioinformatics by vkwn on 2009-09-14 12:32:34 as along with 9 people and 1 group jperkins leechuck Yanno miguel RMGraze indigoviolet jdiggans yevishere ellakat EisenLab
	SMART 4.0: towards genomic data integration. [My Copy] Nucleic acids research, Vol. 32, No. Database issue. (1 January 2004) by Ivica Letunic, Richard R. Copley, Steffen Schmidt, et al.Francesca D. Ciccarelli, Tobias Doerks, Jörg Schultz, Chris P. Ponting, Peer Bork posted to ontology bioinformatics by vkwn on 2009-09-14 10:51:56 as along with 2 people mattis23 Cortel
	GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways [My Copy] Nature Genetics, Vol. 31, No. 1. (01 May 2002), pp. 19-20. by Kam D. Dahlquist, Nathan Salomonis, Karen Vranizan, Steven C. Lawlor, Bruce R. Conklin posted to ontology bioinformatics by vkwn on 2009-09-14 10:37:07 as along with 5 people and 1 group guhjy dragonrez xwbcn fisherp AlexanderPico ConklinLab
	A literature network of human genes for high-throughput analysis of gene expression. [My Copy] Nature Genetics, Vol. 28, No. 1. (May 2001), pp. 21-28. by T. K. Jenssen, A. Laegreid, J. Komorowski, E. Hovig posted to ontology bioinformatics by vkwn on 2009-09-11 17:01:26 as along with 13 people and 4 groups biblio24 guhjy robert85 irenas miguel okarsligil lfriedl yas balajis benny dullhunk adoms TheresaNiederberger dbk-lab kdl Bioinformatics T_lab
	MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data [My Copy] Genome Biology, Vol. 4, No. 1. (2003), R7. by S. W. Doniger, N. Salomonis, K. D. Dahlquist, K. Vranizan, S. C. Lawlor, B. R. Conklin posted to ontology bioinformatics by vkwn on 2009-09-11 15:48:56 as along with 6 people and 1 group Zephyrus thomaskelder dragonrez heliopais AlexanderPico talponer ConklinLab
	GoMiner: a resource for biological interpretation of genomic and proteomic data [My Copy] Genome Biology, Vol. 4, No. 4. (2003), R28. by Barry R. Zeeberg, Weimin Feng, Geoffrey Wang, et al.May D. Wang, Anthony T. Fojo, Margot Sunshine, Sudarshan Narasimhan, David W. Kane, William C. Reinhold, Samir Lababidi, Kimberly J. Bussey, Joseph Riss, Carl C. Barrett, John N. Weinstein posted to ontology bioinformatics by vkwn on 2009-09-11 15:11:41 as along with 4 people jperkins verdicchio Garamonfok waghsk
	FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 4. (1 March 2004), pp. 578-580. by Fátima Al-Shahrour, Ramón Díaz-Uriarte, Joaquín Dopazo posted to ontology bioinformatics by vkwn on 2009-09-11 12:26:28 as along with 8 people jperkins diamantis aalibes RMGraze macavity1g Garamonfok ellakat sgoetz
	Creating the Gene Ontology Resource: Design and Implementation [My Copy] Genome Research, Vol. 11, No. 8. (1 August 2001), pp. 1425-1433. by Gene O. Consortium posted to ontology bioinformatics by vkwn on 2009-09-11 09:23:50 as along with 7 people and 1 group mshossain helliontroy sgoetz PunkRock CitoJam marck dgront biomedical-nlp
	The Gene Ontology (GO) database and informatics resource [My Copy] Nucleic Acids Research, Vol. 32, No. suppl_1. (1 January 2004), pp. D258-261. by Gene O. Consortium posted to ontology bioinformatics by vkwn on 2009-09-09 14:05:09 as along with 11 people and 2 groups YukaH katerinakal setar balajis nuke2005 benny dullhunk bundschu sgoetz talponer waghsk mlkd generif_paper
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by M. Ashburner, C. A. Ball, J. A. Blake, et al.D. Botstein, H. Butler, J. M. Cherry, A. P. Davis, K. Dolinski, S. S. Dwight, J. T. Eppig, M. A. Harris, D. P. Hill, L. Issel-Tarver, A. Kasarskis, S. Lewis, J. C. Matese, J. E. Richardson, M. Ringwald, G. M. Rubin, G. Sherlock posted to ontology bioinformatics by vkwn on 2009-09-09 11:50:48 as along with 71 people and 7 groups niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele CitoJam pablomendes carlk marck dgront roys rvosa fongenae BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab biomedical-nlp FAB-lab
	Biomedical ontologies: a functional perspective [My Copy] Brief Bioinform, Vol. 9, No. 1. (1 January 2008), pp. 75-90. by Daniel L. Rubin, Nigam H. Shah, Natalya F. Noy posted to ontology biology by vkwn on 2009-09-04 09:11:17 as along with 11 people and 1 group druvus daforerog mitko bertelsen guhjy jfr dullhunk RockHI wchapman dansullivanblk sgoetz dbmi-nlp
	KEGG for linking genomes to life and the environment. [My Copy] Nucleic Acids Research, Vol. 36, No. Database issue. (11 January 2008), pp. D480-484. by Minoru Kanehisa, Michihiro Araki, Susumu Goto, et al.Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi posted to system ontology bioinformatics by vkwn on 2009-09-04 09:09:38 as along with 29 people sjcockell JeremyZucker jperkins pablocarb VGreiff mqbphcw3 karinlag robert85 peterli jjray schwartzjmc ubcg08l allysonlister YukaH Cortel coela daforerog reyez namunet irenas guhjy raiyar barriot renatomilani shung hpaces massivemayhem natstreet TheresaNiederberger
	Methods in biomedical ontology [My Copy] Journal of Biomedical Informatics, Vol. 39, No. 3. (June 2006), pp. 252-266. by A. Yu posted to ontology by vkwn on 2009-09-02 14:02:50 as along with 4 people and 4 groups orovellotti beapen dullhunk leechuck Eco informatics Atopic_and_Seborrhoeic_Dermatitis Skin_Deep Applied_Bimatics
	The practical impact of ontologies on biomedical informatics. [My Copy] Yearbook of medical informatics, Vol. 45 Suppl 1 (2006), pp. 124-135. by J. J. Cimino, X. Zhu posted to taxonomy ontology by vkwn on 2009-09-02 13:23:30 as along with 6 people and 2 groups ctl beanformer simaoisc irenas josepe kkaiser dbk-lab IEG
	Bio-ontologies: current trends and future directions [My Copy] Briefings in Bioinformatics, Vol. 7, No. 3. (1 September 2006), pp. 256-274. by Olivier Bodenreider, Robert Stevens posted to ontology classification bioinformatics by vkwn on 2009-09-02 10:39:26 as along with 11 people and 1 group druvus Vincent_Rouilly jorisslob yas dullhunk ebrahim_bagheri aconesa sgoetz BIBLIOma alanrw dansullivanblk T_lab
	The compositional structure of Gene Ontology terms. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2004), pp. 214-225. by P. V. Ogren, K. B. Cohen, G. K. Acquaah-Mensah, J. Eberlein, L. Hunter posted to text ontology mining by vkwn on 2009-09-01 14:05:04 as along with 4 people and 1 group kaihong helliontroy gaudan leechuck biomedical-nlp
	On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology [My Copy] Data Integration in the Life Sciences (2004), pp. 79-94. by Barry Smith, Jacob Köhler, Anand Kumar posted to ontology logic by vkwn on 2009-09-01 14:04:12 as
	Relations in biomedical ontologies. [My Copy] Genome biology, Vol. 6, No. 5. (2005), R46. by Barry Smith, Werner Ceusters, Bert Klagges, et al.Jacob Köhler, Anand Kumar, Jane Lomax, Chris Mungall, Fabian Neuhaus, Alan L. Rector, Cornelius Rosse posted to ontology by vkwn on 2009-09-01 11:31:21 as along with 15 people and 4 groups Scis0000002 irenas setar gorlitsky yas dullhunk onca JeremyZucker helliontroy leechuck PunkRock RockHI thau lenov Mechouche dbk-lab T_lab biomedical-nlp MetabolicModeling
	Topological Analysis of Large-scale Biomedical Terminology Structures [My Copy] Journal of the American Medical Informatics Association, Vol. 14, No. 6. (21 August 2007), pp. 788-797. by M. E. Bales, Y. A. Lussier, S. B. Johnson posted to taxonomy ontology classification analysis by vkwn on 2009-09-01 09:22:15 as along with 2 people and 1 group eesruiz ejmeij Complex Networks
	Advancing translational research with the Semantic Web [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 3. (2007), S2. by Alan Ruttenberg, Tim Clark, William Bug, et al.Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M. Scott Marshall, Chimezie Ogbuji, Jonathan Rees, Susie Stephens, Gwendolyn Wong, Elizabeth Wu, Davide Zaccagnini, Tonya Hongsermeier, Eric Neumann, Ivan Herman, Kei H. Cheung posted to semantics research ontology by vkwn on 2009-08-26 14:58:44 as along with 26 people and 4 groups beanformer artaban421 nicklynch rvosa eesruiz Effie simonmcbride druvus gmcmahon fgibson nuin daforerog guhjy Cortel wnpx dullhunk hpiwowar egonw suizan jasonbobe ibuch PredictER bmaust benfqt Gaetan dansullivanblk FAB-lab ImagCom - Biomedical Text Computing NaCTeM Evidence-based-medicine
	Beyond the data deluge: Data integration and bio-ontologies [My Copy] Journal of Biomedical Informatics In Biomedical Ontologies, Vol. 39, No. 3. (June 2006), pp. 314-320. by J. Blake, C. Bult posted to organisation ontology management knowledge discovery data by vkwn on 2009-08-26 14:25:28 as along with 8 people mqbphcw3 ientb guhjy dullhunk thau MrData Simplicity dansullivanblk
	Biomedical ontologies in action: role in knowledge management, data integration and decision support. [My Copy] Yearbook of Medical Informatics (2008), pp. 67-79. by O. Bodenreider posted to practice ontology biology by vkwn on 2009-08-26 11:36:23 as along with 2 people beanformer dansullivanblk
	Ontologies and the Semantic Web [My Copy] Bulletin of the American Society for Information Science and Technology, Vol. 29, No. 4. (2003), pp. 19-22. by Elin K. Jacob posted to taxonomy ontology classification by vkwn on 2009-08-25 12:12:21 as along with 2 people and 1 group allancho Nassep Semantic Web

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