vkwn's library 192 articles Export

	From concepts to clinical reality: An essay on the benchmarking of biomedical terminologies [My Copy] Journal of Biomedical Informatics, Vol. 39, No. 3. (June 2006), pp. 288-298. by B. Smith posted to practice ontology medicine by vkwn on 2009-11-19 13:14:14 as along with 1 person and 1 group irenas dbk-lab
	Basic concepts of formal ontology [My Copy] In Formal ontology in information systems (1998), pp. 19-28. by Barry Smith edited by N. Guarino posted to theory ontology formal by vkwn on 2009-11-19 12:52:19 as
	Mereotopology: A theory of parts and boundaries [My Copy] Data & Knowledge Engineering, Vol. 20, No. 3. (November 1996), pp. 287-303. by B. Smith posted to theory ontology by vkwn on 2009-11-19 12:13:39 as
	Against fantology [My Copy] Experience and analysis, Vol. 34 (2005), pp. 153-172. by Barry Smith posted to theory philosophy ontology by vkwn on 2009-11-19 09:04:14 as
	Formal ontology, common sense and cognitive science [My Copy] International Journal of Human-Computer Studies, Vol. 43, No. 5-6. (November 1995), pp. 641-667. by B. Smith posted to theory ontology formal by vkwn on 2009-11-16 15:06:44 as along with 1 person and 1 group horeis CompIntelligentSystems
	National Center for Biomedical Ontology: Advancing Biomedicine through Structured Organization of Scientific Knowledge [My Copy] OMICS: A Journal of Integrative Biology, Vol. 10, No. 2. (June 2006), pp. 185-198. by Daniel L. Rubin, Suzanna E. Lewis, Chris J. Mungall, et al.Sima Misra, Monte Westerfield, Michael Ashburner, Ida Sim, Christopher G. Chute, Margaret-Anne Storey, Barry Smith, John Day-Richter, Natalya F. Noy, Mark A. Musen posted to theory practice ontology by vkwn on 2009-11-13 09:28:01 as along with 7 people and 3 groups bertelsen irenas yas balajis dullhunk RockHI sobolevnrm dbk-lab T_lab baker-group
	Framework for a Protein Ontology [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 9. (2007), S1. by Darren Natale, Cecilia Arighi, Winona Barker, et al.Judith Blake, Ti C. Chang, Zhangzhi Hu, Hongfang Liu, Barry Smith, Cathy Wu posted to ontology methods by vkwn on 2009-11-12 13:45:02 as along with 4 people rmbrad richardbickerton grahamc mircea
	An improved ontological representation of dendritic cells as a paradigm for all cell types [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (25 February 2009), 70. by Anna Masci, Cecilia Arighi, Alexander Diehl, et al.Anne Lieberman, Chris Mungall, Richard Scheuermann, Barry Smith, Lindsay Cowell posted to ontology methods by vkwn on 2009-11-12 12:28:49 as along with 2 people and 1 group jaimie mikel_egana Bioinformatics
	Bridging the gap between medical and bioinformatics: An ontological case study in colon carcinoma [My Copy] Computers in Biology and Medicine In Special Issue on Medical Ontologies, Vol. 36, No. 7-8. (July 2006), pp. 694-711. by A. Kumar, Y. Yip, B. Smith, P. Grenon posted to ontology methods by vkwn on 2009-11-12 11:13:42 as
	Quality control for terms and definitions in ontologies and taxonomies [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (19 April 2006), 212. by Jacob Kohler, Katherine Munn, Alexander Ruegg, Andre Skusa, Barry Smith posted to ontology methods by vkwn on 2009-11-11 12:44:31 as along with 1 person and 1 group helliontroy biomedical-nlp
	Functional Anatomy: A Taxonomic Proposal [My Copy] Acta Biotheoretica, Vol. 53, No. 3. (1 December 2005), pp. 153-166. by Ingvar Johansson, Barry Smith, Katherine Munn, et al.Nikoloz Tsikolia, Kathleen Elsner, Dominikus Ernst, Dirk Siebert posted to theory taxonomy ontology by vkwn on 2009-11-11 10:41:49 as
	Biodynamic ontology: applying BFO in the biomedical domain. [My Copy] Studies in Health Technology and Informatics, Vol. 102 (2004), pp. 20-38. by P. Grenon, B. Smith, L. Goldberg posted to ontology methods by vkwn on 2009-11-07 16:24:07 as along with 1 person PunkRock
	A terminological and ontological analysis of the NCI Thesaurus. [My Copy] Methods of information in medicine, Vol. 44, No. 4. (2005), pp. 498-507. by W. Ceusters, B. Smith, L. Goldberg posted to thesaurus ontology formal by vkwn on 2009-11-06 13:12:24 as
	Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies [My Copy] Artificial Intelligence in Medicine, Vol. 39, No. 3. (19 March 2007), pp. 183-195. by O. Bodenreider, B. Smith, A. Kumar, A. Burgun posted to ontology logic formal description by vkwn on 2009-11-06 10:37:18 as along with 1 person hoganwr
	TGF-beta signaling proteins and the Protein Ontology [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 5. (2009), S3. by Cecilia Arighi, Hongfang Liu, Darren Natale, et al.Winona Barker, Harold Drabkin, Judith Blake, Barry Smith, Cathy Wu posted to protein ontology formal by vkwn on 2009-11-06 09:15:08 as along with 1 person guhjy
	Functional Analysis [My Copy] The Journal of Philosophy, Vol. 72, No. 20. (1975), pp. 741-765. by Robert Cummins posted to function analysis by vkwn on 2009-10-04 18:19:59 as
	In Defense of Proper Functions [My Copy] Philosophy of Science, Vol. 56, No. 2. (1989), pp. 288-302. by Ruth G. Millikan posted to function analysis by vkwn on 2009-10-04 18:18:21 as
	Functions as Selected Effects: The Conceptual Analyst's Defense [My Copy] Philosophy of Science, Vol. 58, No. 2. (1991), pp. 168-184. by Karen Neander posted to function analysis by vkwn on 2009-10-04 18:16:32 as
	Functional Analysis and Proper Functions [My Copy] British Journal for the Philosophy of Science, Vol. 44, No. 3. (1 September 1993), pp. 409-422. by Paul E. Griffiths posted to function analysis by vkwn on 2009-10-04 18:15:00 as
	Function without purpose [My Copy] Biology and Philosophy, Vol. 9, No. 4. (1 October 1994), pp. 443-469. by Ron Amundson, George V. Lauder posted to function analysis by vkwn on 2009-10-04 18:13:19 as
	Functional Complexity in Organisms: Parts as Proxies [My Copy] Biology and Philosophy, Vol. 15, No. 5. (1 November 2000), pp. 641-668. by Daniel W. McShea posted to complexity by vkwn on 2009-10-03 12:22:10 as
	Systems of ordering data [My Copy] Biology and Philosophy, Vol. 10, No. 4. (1 October 1995), pp. 419-434. by Ernst Mayr posted to taxonomy classification by vkwn on 2009-10-02 10:21:44 as along with 1 person Scis0000002
	Systematics and the Darwinian Revolution [My Copy] Philosophy of Science, Vol. 55, No. 2. (1988), pp. 238-259. by Kevin de Queiroz posted to taxonomy systematics classification by vkwn on 2009-10-01 10:20:30 as
	Classifications and other ordering systems [My Copy] Journal of Zoological Systematics & Evolutionary Research, Vol. 40, No. 4. (2002), pp. 169-194. by Ernst Mayr, W. J. Bock posted to zoology classification by vkwn on 2009-10-01 08:55:16 as
	How to make oneself nature's spokesman? A latourian account of classification in eighteenth- and early nineteenth-century natural history [My Copy] Biology and Philosophy, Vol. 8, No. 2. (1 April 1993), pp. 193-223. by Dirk Stemerding posted to philosophy history classification by vkwn on 2009-10-01 08:54:55 as
	Gene-expression profiles in hereditary breast cancer. [My Copy] The New England journal of medicine, Vol. 344, No. 8. (22 February 2001), pp. 539-548. by I. Hedenfalk, D. Duggan, Y. Chen, et al.M. Radmacher, M. Bittner, R. Simon, P. Meltzer, B. Gusterson, M. Esteller, O. P. Kallioniemi, B. Wilfond, A. Borg, J. Trent, M. Raffeld, Z. Yakhini, A. Ben-Dor, E. Dougherty, J. Kononen, L. Bubendorf, W. Fehrle, S. Pittaluga, S. Gruvberger, N. Loman, O. Johannsson, H. Olsson, G. Sauter posted to genetics classification by vkwn on 2009-09-28 15:03:46 as along with 3 people srp33 jfr frohike
	DNA Barcoding: Promise and Pitfalls [My Copy] PLoS Biol, Vol. 2, No. 10. (28 September 2004), e354. by Craig Moritz, Carla Cicero posted to taxonomy genetics biology by vkwn on 2009-09-28 14:24:54 as along with 1 person andrezabolzan
	Gene Trees and Species Trees: Molecular Systematics as One-Character Taxonomy [My Copy] Systematic Botany, Vol. 17, No. 1. (1992), pp. 144-163. by Jeff J. Doyle posted to taxonomy genetics by vkwn on 2009-09-28 14:10:00 as
	Biological identifications through DNA barcodes. [My Copy] Proceedings. Biological sciences / The Royal Society, Vol. 270, No. 1512. (7 February 2003), pp. 313-321. by Paul D. Hebert, Alina Cywinska, Shelley L. Ball, Jeremy R. deWaard posted to genetics classification biology by vkwn on 2009-09-28 13:43:27 as along with 5 people jhorton1 vprieto andrezabolzan dchughes emmahe
	Review: Linnaeus's Bibliotheca Botanica [My Copy] Taxon, Vol. 19, No. 3. (1970), pp. 363-411. by John L. Heller posted to taxonomy biology by vkwn on 2009-09-28 13:38:02 as
	Cladistic Analysis and Synthesis: Principles and Definitions, with a Historical Note on Adanson's Familles des plantes (1763-1764) [My Copy] Systematic Zoology, Vol. 28, No. 1. (1979), pp. 1-21. by Gareth Nelson posted to taxonomy biology by vkwn on 2009-09-28 13:37:22 as
	Ordering Systems [My Copy] Science, Vol. 266, No. 5186. (04 November 1994), pp. 715-716. by E. Mayr posted to taxonomy classification biology by vkwn on 2009-09-21 15:50:13 as
	Classification schemes for protein structure and function [My Copy] Nature Reviews Genetics, Vol. 4, No. 7. (01 July 2003), pp. 508-519. by Christos A. Ouzounis, Richard M. R. Coulson, Anton J. Enright, Victor Kunin, Jose B. Pereira-Leal posted to proteins classification biology by vkwn on 2009-09-21 09:21:00 as along with 2 people and 1 group shwu bootsy MuraLab
	Biological classification: towards a synthesis of opposing methodologies [My Copy] Science, Vol. 214 (1981), pp. 510-516. by E. Mayr posted to classification biology by vkwn on 2009-09-17 16:36:11 as
	Theory of biological classification [My Copy] Nature, Vol. 220, No. 5167. (1968), 545. by E. Mayr posted to classification biology by vkwn on 2009-09-17 16:34:28 as
	Cladistic classification and functional explanation [My Copy] Philosophy of Science, Vol. 61, No. 2. (1994), pp. 206-227. by P. E. Griffiths posted to classification biology by vkwn on 2009-09-17 16:32:51 as
	Charles Darwin's views of classification in theory and practice [My Copy] Systematic Biology, Vol. 48, No. 2. (1999), pp. 352-364. by K. Padian posted to classification biology by vkwn on 2009-09-17 16:31:04 as
	GOstat: find statistically overrepresented Gene Ontologies within a group of genes [My Copy] Bioinformatics, Vol. 20, No. 9. (12 June 2004), pp. 1464-1465. by Tim Beissbarth, Terence P. Speed posted to ontology bioinformatics by vkwn on 2009-09-14 12:32:34 as along with 9 people and 1 group jperkins leechuck Yanno miguel RMGraze indigoviolet jdiggans yevishere ellakat EisenLab
	SMART 4.0: towards genomic data integration. [My Copy] Nucleic acids research, Vol. 32, No. Database issue. (1 January 2004) by Ivica Letunic, Richard R. Copley, Steffen Schmidt, et al.Francesca D. Ciccarelli, Tobias Doerks, Jörg Schultz, Chris P. Ponting, Peer Bork posted to ontology bioinformatics by vkwn on 2009-09-14 10:51:56 as along with 2 people mattis23 Cortel
	GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways [My Copy] Nature Genetics, Vol. 31, No. 1. (01 May 2002), pp. 19-20. by Kam D. Dahlquist, Nathan Salomonis, Karen Vranizan, Steven C. Lawlor, Bruce R. Conklin posted to ontology bioinformatics by vkwn on 2009-09-14 10:37:07 as along with 5 people and 1 group guhjy dragonrez xwbcn fisherp AlexanderPico ConklinLab
	A literature network of human genes for high-throughput analysis of gene expression. [My Copy] Nature Genetics, Vol. 28, No. 1. (May 2001), pp. 21-28. by T. K. Jenssen, A. Laegreid, J. Komorowski, E. Hovig posted to ontology bioinformatics by vkwn on 2009-09-11 17:01:26 as along with 13 people and 4 groups biblio24 guhjy robert85 irenas miguel okarsligil lfriedl yas balajis benny dullhunk adoms TheresaNiederberger dbk-lab kdl Bioinformatics T_lab
	MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data [My Copy] Genome Biology, Vol. 4, No. 1. (2003), R7. by S. W. Doniger, N. Salomonis, K. D. Dahlquist, K. Vranizan, S. C. Lawlor, B. R. Conklin posted to ontology bioinformatics by vkwn on 2009-09-11 15:48:56 as along with 6 people and 1 group Zephyrus thomaskelder dragonrez heliopais AlexanderPico talponer ConklinLab
	GoMiner: a resource for biological interpretation of genomic and proteomic data [My Copy] Genome Biology, Vol. 4, No. 4. (2003), R28. by Barry R. Zeeberg, Weimin Feng, Geoffrey Wang, et al.May D. Wang, Anthony T. Fojo, Margot Sunshine, Sudarshan Narasimhan, David W. Kane, William C. Reinhold, Samir Lababidi, Kimberly J. Bussey, Joseph Riss, Carl C. Barrett, John N. Weinstein posted to ontology bioinformatics by vkwn on 2009-09-11 15:11:41 as along with 4 people jperkins verdicchio Garamonfok waghsk
	FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 4. (1 March 2004), pp. 578-580. by Fátima Al-Shahrour, Ramón Díaz-Uriarte, Joaquín Dopazo posted to ontology bioinformatics by vkwn on 2009-09-11 12:26:28 as along with 8 people jperkins diamantis aalibes RMGraze macavity1g Garamonfok ellakat sgoetz
	Creating the Gene Ontology Resource: Design and Implementation [My Copy] Genome Research, Vol. 11, No. 8. (1 August 2001), pp. 1425-1433. by Gene O. Consortium posted to ontology bioinformatics by vkwn on 2009-09-11 09:23:50 as along with 7 people and 1 group mshossain helliontroy sgoetz PunkRock CitoJam marck dgront biomedical-nlp
	The Gene Ontology (GO) database and informatics resource [My Copy] Nucleic Acids Research, Vol. 32, No. suppl_1. (1 January 2004), pp. D258-261. by Gene O. Consortium posted to ontology bioinformatics by vkwn on 2009-09-09 14:05:09 as along with 11 people and 2 groups YukaH katerinakal setar balajis nuke2005 benny dullhunk bundschu sgoetz talponer waghsk mlkd generif_paper
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by M. Ashburner, C. A. Ball, J. A. Blake, et al.D. Botstein, H. Butler, J. M. Cherry, A. P. Davis, K. Dolinski, S. S. Dwight, J. T. Eppig, M. A. Harris, D. P. Hill, L. Issel-Tarver, A. Kasarskis, S. Lewis, J. C. Matese, J. E. Richardson, M. Ringwald, G. M. Rubin, G. Sherlock posted to ontology bioinformatics by vkwn on 2009-09-09 11:50:48 as along with 73 people and 7 groups artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele CitoJam pablomendes carlk marck dgront roys rvosa fongenae BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab biomedical-nlp FAB-lab
	Biomedical ontologies: a functional perspective [My Copy] Brief Bioinform, Vol. 9, No. 1. (1 January 2008), pp. 75-90. by Daniel L. Rubin, Nigam H. Shah, Natalya F. Noy posted to ontology biology by vkwn on 2009-09-04 09:11:17 as along with 11 people and 1 group druvus daforerog mitko bertelsen guhjy jfr dullhunk RockHI wchapman dansullivanblk sgoetz dbmi-nlp
	KEGG for linking genomes to life and the environment. [My Copy] Nucleic Acids Research, Vol. 36, No. Database issue. (11 January 2008), pp. D480-484. by Minoru Kanehisa, Michihiro Araki, Susumu Goto, et al.Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi posted to system ontology bioinformatics by vkwn on 2009-09-04 09:09:38 as along with 30 people Thaverkamp sjcockell JeremyZucker jperkins pablocarb VGreiff mqbphcw3 karinlag robert85 peterli jjray schwartzjmc ubcg08l allysonlister YukaH Cortel coela daforerog reyez namunet irenas guhjy raiyar barriot renatomilani shung hpaces massivemayhem natstreet TheresaNiederberger
	Methods in biomedical ontology [My Copy] Journal of Biomedical Informatics, Vol. 39, No. 3. (June 2006), pp. 252-266. by A. Yu posted to ontology by vkwn on 2009-09-02 14:02:50 as along with 4 people and 4 groups orovellotti beapen dullhunk leechuck Eco informatics Atopic_and_Seborrhoeic_Dermatitis Skin_Deep Applied_Bimatics

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