vkwn's ontology [51 articles] Export

Recent papers added to vkwn's library classified by the tag ontology. You can also see everyone's ontology.

	Towards industrial strength philosophy: how analytical ontology can help medical informatics [My Copy] Interdisciplinary Science Reviews, Vol. 28, No. 2. (01 June 2003), pp. 106-111. by Barry Smith, Werner Ceusters posted to theory ontology informatics by vkwn on 2009-11-22 20:12:32 as
	The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration [My Copy] Nature Biotechnology, Vol. 25, No. 11. (07 November 2007), pp. 1251-1255. by Barry Smith, Michael Ashburner, Cornelius Rosse, et al.Jonathan Bard, William Bug, Werner Ceusters, Louis J. Goldberg, Karen Eilbeck, Amelia Ireland, Christopher J. Mungall, Neocles Leontis, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H. Scheuermann, Nigam Shah, Patricia L. Whetzel, Suzanna Lewis posted to practice ontology by vkwn on 2009-11-22 19:44:58 as along with 24 people and 1 group beanformer druvus mqbphcw3 richardbickerton CameronNeylon nicklynch Scis0000002 jorisslob allysonlister tmmurali jfr dullhunk jandot cjeans leechuck sgoetz PunkRock sobolevnrm lenov AlexanderPico dansullivanblk dagmar marck fgibson baker-group
	From concepts to clinical reality: An essay on the benchmarking of biomedical terminologies [My Copy] Journal of Biomedical Informatics, Vol. 39, No. 3. (June 2006), pp. 288-298. by B. Smith posted to practice ontology medicine by vkwn on 2009-11-19 13:14:14 as along with 1 person and 1 group irenas dbk-lab
	Basic concepts of formal ontology [My Copy] In Formal ontology in information systems (1998), pp. 19-28. by Barry Smith edited by N. Guarino posted to theory ontology formal by vkwn on 2009-11-19 12:52:19 as
	Mereotopology: A theory of parts and boundaries [My Copy] Data & Knowledge Engineering, Vol. 20, No. 3. (November 1996), pp. 287-303. by B. Smith posted to theory ontology by vkwn on 2009-11-19 12:13:39 as
	Against fantology [My Copy] Experience and analysis, Vol. 34 (2005), pp. 153-172. by Barry Smith posted to theory philosophy ontology by vkwn on 2009-11-19 09:04:14 as
	Formal ontology, common sense and cognitive science [My Copy] International Journal of Human-Computer Studies, Vol. 43, No. 5-6. (November 1995), pp. 641-667. by B. Smith posted to theory ontology formal by vkwn on 2009-11-16 15:06:44 as along with 1 person and 1 group horeis CompIntelligentSystems
	National Center for Biomedical Ontology: Advancing Biomedicine through Structured Organization of Scientific Knowledge [My Copy] OMICS: A Journal of Integrative Biology, Vol. 10, No. 2. (June 2006), pp. 185-198. by Daniel L. Rubin, Suzanna E. Lewis, Chris J. Mungall, et al.Sima Misra, Monte Westerfield, Michael Ashburner, Ida Sim, Christopher G. Chute, Margaret-Anne Storey, Barry Smith, John Day-Richter, Natalya F. Noy, Mark A. Musen posted to theory practice ontology by vkwn on 2009-11-13 09:28:01 as along with 7 people and 3 groups bertelsen irenas yas balajis dullhunk RockHI sobolevnrm dbk-lab T_lab baker-group
	Framework for a Protein Ontology [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 9. (2007), S1. by Darren Natale, Cecilia Arighi, Winona Barker, et al.Judith Blake, Ti C. Chang, Zhangzhi Hu, Hongfang Liu, Barry Smith, Cathy Wu posted to ontology methods by vkwn on 2009-11-12 13:45:02 as along with 4 people rmbrad richardbickerton grahamc mircea
	An improved ontological representation of dendritic cells as a paradigm for all cell types [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (25 February 2009), 70. by Anna Masci, Cecilia Arighi, Alexander Diehl, et al.Anne Lieberman, Chris Mungall, Richard Scheuermann, Barry Smith, Lindsay Cowell posted to ontology methods by vkwn on 2009-11-12 12:28:49 as along with 2 people and 1 group jaimie mikel_egana Bioinformatics
	Bridging the gap between medical and bioinformatics: An ontological case study in colon carcinoma [My Copy] Computers in Biology and Medicine In Special Issue on Medical Ontologies, Vol. 36, No. 7-8. (July 2006), pp. 694-711. by A. Kumar, Y. Yip, B. Smith, P. Grenon posted to ontology methods by vkwn on 2009-11-12 11:13:42 as
	Quality control for terms and definitions in ontologies and taxonomies [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (19 April 2006), 212. by Jacob Kohler, Katherine Munn, Alexander Ruegg, Andre Skusa, Barry Smith posted to ontology methods by vkwn on 2009-11-11 12:44:31 as along with 1 person and 1 group helliontroy biomedical-nlp
	Functional Anatomy: A Taxonomic Proposal [My Copy] Acta Biotheoretica, Vol. 53, No. 3. (1 December 2005), pp. 153-166. by Ingvar Johansson, Barry Smith, Katherine Munn, et al.Nikoloz Tsikolia, Kathleen Elsner, Dominikus Ernst, Dirk Siebert posted to theory taxonomy ontology by vkwn on 2009-11-11 10:41:49 as
	Biodynamic ontology: applying BFO in the biomedical domain. [My Copy] Studies in Health Technology and Informatics, Vol. 102 (2004), pp. 20-38. by P. Grenon, B. Smith, L. Goldberg posted to ontology methods by vkwn on 2009-11-07 16:24:07 as along with 1 person PunkRock
	A terminological and ontological analysis of the NCI Thesaurus. [My Copy] Methods of information in medicine, Vol. 44, No. 4. (2005), pp. 498-507. by W. Ceusters, B. Smith, L. Goldberg posted to thesaurus ontology formal by vkwn on 2009-11-06 13:12:24 as
	Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies [My Copy] Artificial Intelligence in Medicine, Vol. 39, No. 3. (19 March 2007), pp. 183-195. by O. Bodenreider, B. Smith, A. Kumar, A. Burgun posted to ontology logic formal description by vkwn on 2009-11-06 10:37:18 as along with 1 person hoganwr
	TGF-beta signaling proteins and the Protein Ontology [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 5. (2009), S3. by Cecilia Arighi, Hongfang Liu, Darren Natale, et al.Winona Barker, Harold Drabkin, Judith Blake, Barry Smith, Cathy Wu posted to protein ontology formal by vkwn on 2009-11-06 09:15:08 as along with 1 person guhjy
	GOstat: find statistically overrepresented Gene Ontologies within a group of genes [My Copy] Bioinformatics, Vol. 20, No. 9. (12 June 2004), pp. 1464-1465. by Tim Beissbarth, Terence P. Speed posted to ontology bioinformatics by vkwn on 2009-09-14 12:32:34 as along with 9 people and 1 group jperkins leechuck Yanno miguel RMGraze indigoviolet jdiggans yevishere ellakat EisenLab
	SMART 4.0: towards genomic data integration. [My Copy] Nucleic acids research, Vol. 32, No. Database issue. (1 January 2004) by Ivica Letunic, Richard R. Copley, Steffen Schmidt, et al.Francesca D. Ciccarelli, Tobias Doerks, Jörg Schultz, Chris P. Ponting, Peer Bork posted to ontology bioinformatics by vkwn on 2009-09-14 10:51:56 as along with 2 people mattis23 Cortel
	GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways [My Copy] Nature Genetics, Vol. 31, No. 1. (01 May 2002), pp. 19-20. by Kam D. Dahlquist, Nathan Salomonis, Karen Vranizan, Steven C. Lawlor, Bruce R. Conklin posted to ontology bioinformatics by vkwn on 2009-09-14 10:37:07 as along with 5 people and 1 group guhjy dragonrez xwbcn fisherp AlexanderPico ConklinLab
	A literature network of human genes for high-throughput analysis of gene expression. [My Copy] Nature Genetics, Vol. 28, No. 1. (May 2001), pp. 21-28. by T. K. Jenssen, A. Laegreid, J. Komorowski, E. Hovig posted to ontology bioinformatics by vkwn on 2009-09-11 17:01:26 as along with 13 people and 4 groups biblio24 guhjy robert85 irenas miguel okarsligil lfriedl yas balajis benny dullhunk adoms TheresaNiederberger dbk-lab kdl Bioinformatics T_lab
	MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data [My Copy] Genome Biology, Vol. 4, No. 1. (2003), R7. by S. W. Doniger, N. Salomonis, K. D. Dahlquist, K. Vranizan, S. C. Lawlor, B. R. Conklin posted to ontology bioinformatics by vkwn on 2009-09-11 15:48:56 as along with 6 people and 1 group Zephyrus thomaskelder dragonrez heliopais AlexanderPico talponer ConklinLab
	GoMiner: a resource for biological interpretation of genomic and proteomic data [My Copy] Genome Biology, Vol. 4, No. 4. (2003), R28. by Barry R. Zeeberg, Weimin Feng, Geoffrey Wang, et al.May D. Wang, Anthony T. Fojo, Margot Sunshine, Sudarshan Narasimhan, David W. Kane, William C. Reinhold, Samir Lababidi, Kimberly J. Bussey, Joseph Riss, Carl C. Barrett, John N. Weinstein posted to ontology bioinformatics by vkwn on 2009-09-11 15:11:41 as along with 4 people jperkins verdicchio Garamonfok waghsk
	FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 4. (1 March 2004), pp. 578-580. by Fátima Al-Shahrour, Ramón Díaz-Uriarte, Joaquín Dopazo posted to ontology bioinformatics by vkwn on 2009-09-11 12:26:28 as along with 8 people jperkins diamantis aalibes RMGraze macavity1g Garamonfok ellakat sgoetz
	Creating the Gene Ontology Resource: Design and Implementation [My Copy] Genome Research, Vol. 11, No. 8. (1 August 2001), pp. 1425-1433. by Gene O. Consortium posted to ontology bioinformatics by vkwn on 2009-09-11 09:23:50 as along with 7 people and 1 group mshossain helliontroy sgoetz PunkRock CitoJam marck dgront biomedical-nlp
	The Gene Ontology (GO) database and informatics resource [My Copy] Nucleic Acids Research, Vol. 32, No. suppl_1. (1 January 2004), pp. D258-261. by Gene O. Consortium posted to ontology bioinformatics by vkwn on 2009-09-09 14:05:09 as along with 11 people and 2 groups YukaH katerinakal setar balajis nuke2005 benny dullhunk bundschu sgoetz talponer waghsk mlkd generif_paper
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by M. Ashburner, C. A. Ball, J. A. Blake, et al.D. Botstein, H. Butler, J. M. Cherry, A. P. Davis, K. Dolinski, S. S. Dwight, J. T. Eppig, M. A. Harris, D. P. Hill, L. Issel-Tarver, A. Kasarskis, S. Lewis, J. C. Matese, J. E. Richardson, M. Ringwald, G. M. Rubin, G. Sherlock posted to ontology bioinformatics by vkwn on 2009-09-09 11:50:48 as along with 74 people and 7 groups Jporci artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele CitoJam pablomendes carlk marck dgront roys rvosa fongenae BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab biomedical-nlp FAB-lab
	Biomedical ontologies: a functional perspective [My Copy] Brief Bioinform, Vol. 9, No. 1. (1 January 2008), pp. 75-90. by Daniel L. Rubin, Nigam H. Shah, Natalya F. Noy posted to ontology biology by vkwn on 2009-09-04 09:11:17 as along with 11 people and 1 group druvus daforerog mitko bertelsen guhjy jfr dullhunk RockHI wchapman dansullivanblk sgoetz dbmi-nlp
	KEGG for linking genomes to life and the environment. [My Copy] Nucleic Acids Research, Vol. 36, No. Database issue. (11 January 2008), pp. D480-484. by Minoru Kanehisa, Michihiro Araki, Susumu Goto, et al.Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi posted to system ontology bioinformatics by vkwn on 2009-09-04 09:09:38 as along with 30 people Thaverkamp sjcockell JeremyZucker jperkins pablocarb VGreiff mqbphcw3 karinlag robert85 peterli jjray schwartzjmc ubcg08l allysonlister YukaH Cortel coela daforerog reyez namunet irenas guhjy raiyar barriot renatomilani shung hpaces massivemayhem natstreet TheresaNiederberger
	Methods in biomedical ontology [My Copy] Journal of Biomedical Informatics, Vol. 39, No. 3. (June 2006), pp. 252-266. by A. Yu posted to ontology by vkwn on 2009-09-02 14:02:50 as along with 4 people and 4 groups orovellotti beapen dullhunk leechuck Eco informatics Atopic_and_Seborrhoeic_Dermatitis Skin_Deep Applied_Bimatics
	The practical impact of ontologies on biomedical informatics. [My Copy] Yearbook of medical informatics, Vol. 45 Suppl 1 (2006), pp. 124-135. by J. J. Cimino, X. Zhu posted to taxonomy ontology by vkwn on 2009-09-02 13:23:30 as along with 6 people and 2 groups ctl beanformer simaoisc irenas josepe kkaiser dbk-lab IEG
	Bio-ontologies: current trends and future directions [My Copy] Briefings in Bioinformatics, Vol. 7, No. 3. (1 September 2006), pp. 256-274. by Olivier Bodenreider, Robert Stevens posted to ontology classification bioinformatics by vkwn on 2009-09-02 10:39:26 as along with 11 people and 1 group druvus Vincent_Rouilly jorisslob yas dullhunk ebrahim_bagheri aconesa sgoetz BIBLIOma alanrw dansullivanblk T_lab
	The compositional structure of Gene Ontology terms. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2004), pp. 214-225. by P. V. Ogren, K. B. Cohen, G. K. Acquaah-Mensah, J. Eberlein, L. Hunter posted to text ontology mining by vkwn on 2009-09-01 14:05:04 as along with 4 people and 1 group kaihong helliontroy gaudan leechuck biomedical-nlp
	On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology [My Copy] Data Integration in the Life Sciences (2004), pp. 79-94. by Barry Smith, Jacob Köhler, Anand Kumar posted to ontology logic by vkwn on 2009-09-01 14:04:12 as
	Relations in biomedical ontologies. [My Copy] Genome biology, Vol. 6, No. 5. (2005), R46. by Barry Smith, Werner Ceusters, Bert Klagges, et al.Jacob Köhler, Anand Kumar, Jane Lomax, Chris Mungall, Fabian Neuhaus, Alan L. Rector, Cornelius Rosse posted to ontology by vkwn on 2009-09-01 11:31:21 as along with 15 people and 4 groups Scis0000002 irenas setar gorlitsky yas dullhunk onca JeremyZucker helliontroy leechuck PunkRock RockHI thau lenov Mechouche dbk-lab T_lab biomedical-nlp MetabolicModeling
	Topological Analysis of Large-scale Biomedical Terminology Structures [My Copy] Journal of the American Medical Informatics Association, Vol. 14, No. 6. (21 August 2007), pp. 788-797. by M. E. Bales, Y. A. Lussier, S. B. Johnson posted to taxonomy ontology classification analysis by vkwn on 2009-09-01 09:22:15 as along with 2 people and 1 group eesruiz ejmeij Complex Networks
	Advancing translational research with the Semantic Web [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 3. (2007), S2. by Alan Ruttenberg, Tim Clark, William Bug, et al.Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M. Scott Marshall, Chimezie Ogbuji, Jonathan Rees, Susie Stephens, Gwendolyn Wong, Elizabeth Wu, Davide Zaccagnini, Tonya Hongsermeier, Eric Neumann, Ivan Herman, Kei H. Cheung posted to semantics research ontology by vkwn on 2009-08-26 14:58:44 as along with 26 people and 4 groups beanformer artaban421 nicklynch rvosa eesruiz Effie simonmcbride druvus gmcmahon fgibson nuin daforerog guhjy Cortel wnpx dullhunk hpiwowar egonw suizan jasonbobe ibuch PredictER bmaust benfqt Gaetan dansullivanblk FAB-lab ImagCom - Biomedical Text Computing NaCTeM Evidence-based-medicine
	Beyond the data deluge: Data integration and bio-ontologies [My Copy] Journal of Biomedical Informatics In Biomedical Ontologies, Vol. 39, No. 3. (June 2006), pp. 314-320. by J. Blake, C. Bult posted to organisation ontology management knowledge discovery data by vkwn on 2009-08-26 14:25:28 as along with 8 people mqbphcw3 ientb guhjy dullhunk thau MrData Simplicity dansullivanblk
	Biomedical ontologies in action: role in knowledge management, data integration and decision support. [My Copy] Yearbook of Medical Informatics (2008), pp. 67-79. by O. Bodenreider posted to practice ontology biology by vkwn on 2009-08-26 11:36:23 as along with 2 people beanformer dansullivanblk
	Ontologies and the Semantic Web [My Copy] Bulletin of the American Society for Information Science and Technology, Vol. 29, No. 4. (2003), pp. 19-22. by Elin K. Jacob posted to taxonomy ontology classification by vkwn on 2009-08-25 12:12:21 as along with 2 people and 1 group allancho Nassep Semantic Web
	Logical Foundations of Artificial Intelligence [My Copy] (1987) by Michael R. Genesereth, Nils J. Nilsson posted to ontology ai by vkwn on 2009-08-24 10:57:14 as
	A translation approach to portable ontology specifications [My Copy] Knowledge Acquisition, Vol. 5, No. 2. (June 1993), pp. 199-220. by Thomas R. Gruber posted to ontology by vkwn on 2009-08-24 09:37:37 as along with 16 people and 8 groups adipple milstan nina4citeulike leeleong planetoid schaal RafG leechuck monientiedt josemgarcia flashfonic abellogin birdsky federicopaoloni dvallet fongenae 3D24 INC Blog_and_Wiki_Research digital_youth Librarians Wikipedia folksonomy NETS NETS-UAM
	Using the Gene Ontology to Annotate Biomedical Journal Articles [My Copy] Nature Precedings (6 August 2009) by Michael Bada, Lawrence Hunter posted to text ontology mining genetics by vkwn on 2009-08-19 14:31:06 as
	Controlled vocabularies in bioinformatics: a case study in the gene ontology [My Copy] Drug Discovery Today: BIOSILICO, Vol. 2, No. 6. (November 2004), pp. 246-252. by B. Smith, A. Kumar posted to vocabularies ontology genetics controlled classification biology by vkwn on 2009-08-19 14:29:23 as
	The use of gene ontology evidence codes in preventing classifier assessment bias [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1173-1177. by Mark F. Rogers, Asa Ben-Hur posted to classification ontology by vkwn on 2009-08-04 13:29:23 as along with 4 people jfr kshameer rdiaz dullhunk
	Survey-based naming conventions for use in OBO Foundry ontology development [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 125. by Daniel Schober, Barry Smith, Suzanna Lewis, et al.Waclaw Kusnierczyk, Jane Lomax, Chris Mungall, Chris Taylor, Philippe R. Serra, Susanna A. Sansone posted to management ontology by vkwn on 2009-06-02 09:30:22 as along with 4 people fgibson allysonlister peteruetz dullhunk
	“To treat of the world” : Paul Otlet's ontology and epistemology and the circle of knowledge [My Copy] Journal of Documentation, Vol. 65, No. 2. (2009), pp. 223-244. by Steffen Ducheyne posted to classification knowledge ontology by vkwn on 2009-04-07 10:37:06 as
	Predicting gene function from patterns of annotation [My Copy] Genome Research, Vol. 13 (2003), pp. 896-904. by Oliver D. King, Rebecca E. Foulger, Selina S. Dwight, James V. White, Frederick P. Roth posted to annotation genetics ontology by vkwn on 2009-03-06 10:21:51 as
	Gene Ontology annotations: what they mean and where they come from. [My Copy] BMC bioinformatics, Vol. 9 Suppl 5 (2008) by D. P. Hill, B. Smith, M. S. McAndrews-Hill, J. A. Blake posted to genetics information ontology by vkwn on 2009-03-06 10:17:47 as along with 8 people and 1 group guhjy dchughes mariakmejia carlk lmichan grahamc dullhunk sabinaleo e-research en ciencias médicas y biológicas
	The EXACT description of biomedical protocols [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i295-303. by Larisa N. Soldatova, Wayne Aubrey, Ross D. King, Amanda Clare posted to description experiment ontology by vkwn on 2008-11-07 13:50:40 as along with 4 people thegoose2 Vincent_Rouilly dullhunk tharris

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information	67
ontology	51
biology	38
science	34
classification	27
theory	21
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bioinformatics	13
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vkwn's ontology [51 articles] Export

vkwn's tags