vladimirov's library 202 articles Export

	Chemoattractant signaling in dictyostelium discoideum. [My Copy] Annual review of cell and developmental biology, Vol. 20 (2004), pp. 223-253. by Carol L. Manahan, Pablo A. Iglesias, Yu Long, Peter N. Devreotes posted to eukaryotes dicty chemotaxis by vladimirov on 2009-10-02 13:42:02 as
	Role of Translational Coupling in Robustness of Bacterial Chemotaxis Pathway [My Copy] PLoS Biol, Vol. 7, No. 8. (18 August 2009), e1000171. by Linda Løvdok, Kajetan Bentele, Nikita Vladimirov, et al.Anette Müller, Ferencz S. Pop, Dirk Lebiedz, Markus Kollmann, Victor Sourjik posted to translational coupling chemotaxis bacterial by vladimirov on 2009-10-01 15:42:28 as along with 2 people jjray biomcgary
	Responding to attraction: chemotaxis and chemotropism in Dictyostelium and yeast. [My Copy] Trends in cell biology, Vol. 9, No. 1. (January 1999), pp. 20-27. by R. A. Arkowitz posted to yeast eukaryotic dicty chemotaxis by vladimirov on 2009-10-01 10:17:39 as
	Molecular and cellular mechanisms of leukocyte chemotaxis [My Copy] Science, Vol. 213, No. 4510. (21 August 1981), pp. 830-837. by R. Snyderman, E. J. Goetzl posted to leukocyte eucaryote chemotaxis by vladimirov on 2009-10-01 10:11:29 as
	Modeling Subdiffusion Using Reaction Diffusion Systems [My Copy] SIAM Journal on Applied Mathematics, Vol. 70, No. 1. (2009), pp. 112-132. by Mario S. Mommer, Dirk Lebiedz posted to subdiffusion reaction molecular diffusion crowding by vladimirov on 2009-09-29 15:14:58 as
	A stochastic analysis of first-order reaction networks [My Copy] Bulletin of Mathematical Biology, Vol. 67, No. 5. (1 September 2005), pp. 901-946. by Chetan Gadgil, Chang Lee, Hans Othmer posted to networks methods closure biochemical by vladimirov on 2009-09-29 13:26:23 as
	A moment closure method for stochastic reaction networks [My Copy] The Journal of Chemical Physics, Vol. 130, No. 13. (2009), 134107. by Chang H. Lee, Kyeong H. Kim, Pilwon Kim posted to stochastic networks methods closure by vladimirov on 2009-09-29 13:09:15 as along with 1 person jjray
	Automatic Complexity Analysis and Model Reduction of Nonlinear Biochemical Systems [My Copy] Computational Methods in Systems Biology (2008), pp. 123-140. by Dirk Lebiedz, Dominik Skanda, Marc Fein posted to systems reduction nonlinear model biochemical automatic by vladimirov on 2009-09-29 10:45:00 as
	Approximation of slow attracting manifolds in chemical kinetics by trajectory-based optimization approaches. [My Copy] The journal of physical chemistry. A, Vol. 112, No. 8. (28 February 2008), pp. 1712-1718. by V. Reinhardt, M. Winckler, D. Lebiedz posted to reduction model manifolds kinetics chemical by vladimirov on 2009-09-29 10:40:35 as
	Computing minimal entropy production trajectories: an approach to model reduction in chemical kinetics. [My Copy] The Journal of chemical physics, Vol. 120, No. 15. (15 April 2004), pp. 6890-6897. by D. Lebiedz posted to reduction model kinetics chemical by vladimirov on 2009-09-29 10:36:47 as along with 1 person nathanielvirgo
	Manipulation of Self-Aggregation Patterns and Waves in a Reaction-Diffusion System by Optimal Boundary Control Strategies [My Copy] Physical Review Letters, Vol. 91, No. 20. (Nov 2003), 208301. by Dirk Lebiedz, Ulrich B. Pollmann posted to self-aggregation keller-segel control chemotaxis by vladimirov on 2009-09-28 10:28:38 as
	Hybrid stochastic simulations of intracellular reaction–diffusion systems [My Copy] Computational Biology and Chemistry, Vol. 33, No. 3. (2 June 2009), pp. 205-215. by Georgios Kalantzis posted to reaction-diffusion model hybrid by vladimirov on 2009-08-28 12:58:07 as along with 2 people fierykylin ddcttrl
	Hybrid simulations of stochastic reaction-diffusion processes for modeling intracellular signaling pathways. [My Copy] Physical review. E, Statistical, nonlinear, and soft matter physics, Vol. 74, No. 5 Pt 1. (November 2006) by K-H H. Chiam, Chee Meng M. Tan, Vipul Bhargava, Gunaretnam Rajagopal posted to reaction-diffusion model hybrid by vladimirov on 2009-08-28 12:55:31 as
	Efficient step size selection for the tau-leaping simulation method [My Copy] The Journal of Chemical Physics, Vol. 124, No. 4. (2006), 044109. by Yang Cao, Daniel T. Gillespie, Linda R. Petzold posted to tau-leaping multi-scale by vladimirov on 2009-08-28 10:51:49 as along with 3 people sjayanthi RamuAnandakrishnan jporternj
	Approximate accelerated stochastic simulation of chemically reacting systems [My Copy] The Journal of Chemical Physics, Vol. 115, No. 4. (2001), pp. 1716-1733. by Daniel T. Gillespie posted to tau-leaping multi-scale by vladimirov on 2009-08-28 10:48:07 as along with 3 people fierykylin dagmar matthewhflamm
	Control of direction of flagellar rotation in bacterial chemotaxis [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 1. (6 January 1998), pp. 201-206. by Birgit E. Scharf, Karen A. Fahrner, Linda Turner, Howard C. Berg posted to flagellar motor by vladimirov on 2009-08-01 11:56:42 as along with 1 person chrn
	Temperature Dependence of Switching of the Bacterial Flagellar Motor by the Protein CheY13DK106YW [My Copy] Biophysical Journal, Vol. 77, No. 1. (July 1999), pp. 597-603. by L. Turner posted to flagellar motor by vladimirov on 2009-08-01 11:55:21 as
	Quantitative analysis of experiments on bacterial chemotaxis to naphthalene. [My Copy] Biotechnology and bioengineering, Vol. 78, No. 6. (20 June 2002), pp. 626-634. by J. A. Pedit, R. B. Marx, C. T. Miller, M. D. Aitken posted to assay capillary keller-segel model by vladimirov on 2009-07-07 13:29:03 as
	Quantification of chemotaxis to naphthalene by Pseudomonas putida G7. [My Copy] Applied and environmental microbiology, Vol. 65, No. 7. (July 1999), pp. 2847-2852. by R. B. Marx, M. D. Aitken posted to assay capillary keller-segel model by vladimirov on 2009-07-07 13:24:18 as
	A material-balance approach for modeling bacterial chemotaxis to a consumable substrate in the capillary assay [My Copy] Biotechnology and Bioengineering, Vol. 68, No. 3. (2000), pp. 308-315. by Randall B. Marx, Michael D. Aitken posted to assay capillary keller-segel model by vladimirov on 2009-07-07 13:22:57 as
	From signal transduction to spatial pattern formation in E. coli: A paradigm for multiscale modeling in biology [My Copy] Multiscale Modeling & Simulation, Vol. 3, No. 2. (2005), pp. 362-394. by Radek Erban, Hans G. Othmer posted to keller-segel multiscale by vladimirov on 2009-07-06 12:50:35 as
	Transport models for chemotactic cell populations based on individual cell behavior [My Copy] Chemical Engineering Science, Vol. 44, No. 12. (1989), pp. 2881-2897. by Mercedes A. Rivero posted to keller-segel model by vladimirov on 2009-07-06 10:32:00 as
	Measurement of bacterial random motility and chemotaxis coefficients: II. Application of single-cell-based mathematical model [My Copy] Biotechnology and Bioengineering, Vol. 37, No. 7. (1991), pp. 661-672. by Roseanne M. Ford, Douglas A. Lauffenburger posted to chamber chemotaxis sfdc stopped-flow by vladimirov on 2009-07-06 10:13:50 as
	Mutual Information between Input and Output Trajectories of Biochemical Networks. [My Copy] Physical review letters, Vol. 102, No. 21. (29 May 2009) by F. Tostevin, P. R. Ten Wolde posted to chemotaxis input-output models by vladimirov on 2009-06-29 10:20:47 as
	Logarithmic sensing in Escherichia coli bacterial chemotaxis. [My Copy] Biophysical journal, Vol. 96, No. 6. (18 March 2009), pp. 2439-2448. by Y. V. Kalinin, L. Jiang, Y. Tu, M. Wu posted to chemotaxis logarithmic microfluidics weber weber-fechner by vladimirov on 2009-06-29 09:54:58 as
	Biased random walk models for chemotaxis and related diffusion approximations [My Copy] Journal of Mathematical Biology, Vol. 9, No. 2. (1 April 1980), pp. 147-177. by Wolgang Alt posted to model random walk by vladimirov on 2009-06-24 15:32:59 as
	Statistical measures of bacterial motility and chemotaxis. [My Copy] Journal of theoretical biology, Vol. 50, No. 2. (April 1975), pp. 477-496. by P. S. Lovely, F. W. Dahlquist posted to bacterium chemotaxis model single-cell by vladimirov on 2009-06-24 15:30:50 as
	Multiple kinetic states for the flagellar motor switch. [My Copy] J. Bacteriol., Vol. 171, No. 11. (1 November 1989), pp. 6279-6287. by S. C. Kuo, D. E. Koshland posted to flagellar motor by vladimirov on 2009-06-23 09:39:59 as
	Stochastic simulation of chemical reactions with spatial resolution and single molecule detail. [My Copy] Phys Biol, Vol. 1, No. 3-4. (December 2004), pp. 137-151. by S. S. Andrews, D. Bray posted to smoldyn by vladimirov on 2009-06-20 14:59:00 as along with 9 people and 3 groups jjray fierykylin roland_ewald dagmar csanford lenov m_j gabe_rosser arjunan dIEMoSIRIS MoSi-Rostock compneur
	Rapid chemotactic response enables marine bacteria to exploit ephemeral microscale nutrient patches. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 11. (18 March 2008), pp. 4209-4214. by R. Stocker, J. R. Seymour, A. Samadani, D. E. Hunt, M. F. Polz posted to chemotaxis microfluidics by vladimirov on 2009-06-19 16:00:41 as
	Adaptational assistance in clusters of bacterial chemoreceptors [My Copy] Molecular Microbiology, Vol. 56, No. 6. (June 2005), pp. 1617-1626. by Mingshan Li, Gerald L. Hazelbauer posted to assistance neighborhood by vladimirov on 2009-06-11 12:16:03 as
	Cooperative model of bacterial sensing [My Copy] Physical Review E, Vol. 58, No. 5. (Nov 1998), pp. 6399-6406. by Yu Shi, Thomas Duke posted to chemotaxis ising model by vladimirov on 2009-06-10 15:37:18 as
	Perfect and Near-Perfect Adaptation in a Model of Bacterial Chemotaxis [My Copy] Vol. 84, No. 5. (1 May 2003), pp. 2943-2956. by Bernardo A. Mello, Yuhai Tu posted to adaptation chemotaxis model perfect by vladimirov on 2009-06-10 14:05:42 as
	Swimming patterns and dynamics of simulated Escherichia coli bacteria [My Copy] Journal of The Royal Society Interface (25 February 2009) by Laura Zonia, Dennis Bray posted to bacterial bct chemotaxis model simulation by vladimirov on 2009-06-05 14:44:13 as
	Two-state model for bacterial chemoreceptor proteins The role of multiple methylation [My Copy] Journal of Molecular Biology, Vol. 176, No. 3. (July 1984), pp. 349-367. by S. Asakura posted to adaptation chemotaxis four-state model by vladimirov on 2009-06-05 11:16:11 as
	Simple molecular model for sensing and adaptation based on receptor modification with application to bacterial chemotaxis1 [My Copy] Journal of Molecular Biology*, Vol. 161, No. 3. (November 1982), pp. 395-416. by A. Goldbeter posted to adaptation chemotaxis model by vladimirov on 2009-06-05 10:40:55 as
	A response regulator model in a simple sensory system. [My Copy] Science (New York, N.Y.), Vol. 196, No. 4294. (3 June 1977), pp. 1055-1063. by D. E. Koshland posted to bacterial chemotaxis by vladimirov on 2009-06-03 11:03:17 as
	Impulse responses in bacterial chemotaxis [My Copy] Cell, Vol. 31, No. 1. (November 1982), pp. 215-226. by S. Block posted to bacterial chemotaxis filter impulse by vladimirov on 2009-06-03 09:45:02 as
	Real-time nonlinear feedback control of pattern formation in (bio)chemical reaction-diffusion processes: A model study [My Copy] Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 15, No. 3. (2005), 033901. by Brandt U. Pollmann, D. Lebiedz, M. Diehl, S. Sager, J. Schlöder posted to control keller-segel optimal by vladimirov on 2009-06-01 14:19:37 as
	External optimal control of self-organisation dynamics in a chemotaxis reaction diffusion system [My Copy] Systems Biology, IEE Proceedings In Systems Biology, IEE Proceedings, Vol. 1, No. 2. (2004), pp. 222-229. by D. Lebiedz, H. Maurer posted to control keller-segel optimal by vladimirov on 2009-06-01 14:17:16 as
	To Honor Fechner and Repeal His Law: A power function, not a log function, describes the operating characteristic of a sensory system. [My Copy] Science (New York, N.Y.), Vol. 133, No. 3446. (13 January 1961), pp. 80-86. by S S S. Stevens posted to phychophysics weber-fechner by vladimirov on 2009-04-25 14:39:43 as
	Neural coding and the basic law of psychophysics. [My Copy] Neuroscientist, Vol. 8, No. 2. (April 2002), pp. 111-121. by K. O. Johnson, S. S. Hsiao, T. Yoshioka posted to fechner law psychophysics review weber by vladimirov on 2009-04-23 17:52:34 as along with 5 people and 1 group brian klouie balicea suizan lgp101 Glimcher_Lab
	Cyclic GMP and calcium: the internal messengers of excitation and adaptation in vertebrate photoreceptors. [My Copy] Vision research, Vol. 30, No. 12. (1990), pp. 1923-1948. by E. N. Pugh, T. D. Lamb posted to adaptation and excitation in photoreceptors vertebrate by vladimirov on 2009-04-23 17:08:18 as
	Role of cGMP and Ca2+ in vertebrate photoreceptor excitation and adaptation. [My Copy] Annual review of physiology, Vol. 54 (1992), pp. 153-175. by U. B. Kaupp, K. W. Koch posted to adaptation and excitation photoreceptor vertebrate by vladimirov on 2009-04-23 16:58:32 as
	The Cellular and Molecular Basis of Odor Adaptation [My Copy] Chem. Senses, Vol. 25, No. 4. (1 August 2000), pp. 473-481. by Frank Zufall, Trese Leinders-Zufall posted to adaptation odor by vladimirov on 2009-04-23 16:45:58 as
	Cellular and molecular constituents of olfactory sensation in vertebrates. [My Copy] Comparative biochemistry and physiology. Part A, Molecular & integrative physiology, Vol. 126, No. 1. (May 2000), pp. 17-32. by T. Nakamura posted to olfactory sensation vertebrates by vladimirov on 2009-04-23 16:33:55 as
	Chemotaxis in bacteria. [My Copy] Annual review of biochemistry, Vol. 44 (1975), pp. 341-356. by J. Adler posted to bacterial chemotaxis by vladimirov on 2009-04-23 15:04:52 as
	Bacterial chemotaxis in relation to neurobiology. [My Copy] Annual review of neuroscience, Vol. 3 (1980), pp. 43-75. by D. E. Koshland posted to chemotaxis neuroscience by vladimirov on 2009-04-23 14:08:28 as
	Quantitation of the sensory response in bacterial chemotaxis. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 72, No. 2. (February 1975), pp. 710-713. by J. L. Spudich, D. E. Koshland posted to chemotaxis film by vladimirov on 2009-04-23 14:02:21 as
	Measurement of bacterial random motility and chemotaxis coefficients: I. Stopped-flow diffusion chamber assay [My Copy] Biotechnology and Bioengineering, Vol. 37, No. 7. (25 March 1991), pp. 647-660. by Roseanne M. Ford, Bret R. Phillips, John A. Quinn, Douglas A. Lauffenburger posted to chamber chemotaxis stopped-flow by vladimirov on 2009-04-23 13:33:59 as

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chemotaxis	141
bacterial	95
model	20
adaptation	13
review	11
escherichia	10
coli	8
keller-segel	8
bacteria	7
noise	7
assay	6
motor	6
mwc	6
receptor	6
capillary	5
cell	4
ecology	4
eukaryotic	4
flagellar	4
medium	4
motility	4
simulation	4
viscosity	4
viscous	4
competition	3
control	3
experiment	3
gene	3
growth	3
methylation	3
population	3
protein	3
receptors	3
reduction	3
response	3
and	2
assistance	2
bct	2
biochemical	2
chamber	2
chemical	2
chemoreceptors	2
closure	2
dicty	2
dimers	2
diversity	2
excitation	2
fret	2
gradients	2
hybrid	2
in	2
individuality	2
ising	2
kinetics	2
methods	2
microfluidics	2
monte-carlo	2
multi-scale	2
neighborhood	2
networks	2
of	2
optimal	2
reaction-diffusion	2
sensitivity	2
stopped-flow	2
swimming	2
systems	2
tau-leaping	2
theory	2
tracking	2
trimers	2
vertebrate	2
vivo	2
weber	2
weber-fechner	2
adhesion	1
affinity	1
allosteric	1
angle	1
archaea	1
automatic	1
bacterium	1
binding	1
blood	1
bradford	1
brownian	1
cheb	1
chey	1
cholera	1
cluster	1
clusters	1
co-expression	1
copy	1
coupling	1
crowding	1
deletion	1
denitrifiers	1
diffusion	1
eucaryote	1
eukaryotes	1
expression	1
fechner	1
film	1
filter	1
flagella	1
fluorescent	1
four-state	1
fusions	1
high-throughput	1
impulse	1
input-output	1
intestinal	1
law	1
leukocyte	1
logarithmic	1
manifolds	1
marine	1
mean-field	1
memory	1
microbial	1
microchambers	1
microscope	1
models	1
modification	1
molecular	1
motion	1
motors	1
mucus	1
multiscale	1
mutants	1
neuroscience	1
nonlinear	1
numbers	1
odor	1
olfactory	1
operon	1
perfect	1
photoreceptor	1
photoreceptors	1
phychophysics	1
probability	1
psychophysics	1
quantitation	1
quorum	1
random	1
rapidcell	1
reaction	1
real-time	1
regulation	1
repellent	1
robustness	1
run	1
self-aggregation	1
sensation	1
sensing	1
sensory	1
sfdc	1
single	1
single-cell	1
smoldyn	1
spirochetes	1
stochastic	1
stoichiometry	1
stress	1
structure	1
subdiffusion	1
tethered	1
tethering	1
transcription	1
transient	1
translation	1
translational	1
tumble	1
turning	1
variability	1
vertebrates	1
vibrio	1
vitro	1
walk	1
yeast	1

vladimirov's library 202 articles Export

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