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vplagnol's library [166 articles]

Recent papers added to vplagnol's library.
  • Power and sample size calculations for case-control genetic association tests when errors are present: application to single nucleotide polymorphisms.
    Human heredity, Vol. 54, No. 1. (2002), pp. 22-33.
    by D Gordon, SJ Finch, M Nothnagel, J Ott
    posted to genotyping association by vplagnol on 2008-07-23 16:36:10 as **
  • Genome-wide analysis of transcript isoform variation in humans.
    Nat Genet (13 January 2008)
    by Tony Kwan, David Benovoy, Christel Dias, Scott Gurd, Cathy Provencher, Patrick Beaulieu, Thomas J J Hudson, Rob Sladek, Jacek Majewski
    posted to geneexpression ase by vplagnol on 2008-07-14 16:06:03 as ** along with 5 people nicholso jo_davies caseybrown stoffreg meiklej
  • Autoantibodies in type 1 diabetes.
    Autoimmunity, Vol. 41, No. 1. (February 2008), pp. 11-18.
    by CE Taplin, JM Barker
    posted to t1d autoantibody by vplagnol on 2008-07-11 23:41:32 as *****
  • Characterization of the humoral immune response to islet antigen 2 in children with newly diagnosed type 1 diabetes.
    European journal of endocrinology / European Federation of Endocrine Societies, Vol. 159, No. 1. (July 2008), pp. 19-26.
    by A Mäkinen, T Härkönen, J Ilonen, M Knip,
    posted to t1d ia2 autoantibody by vplagnol on 2008-07-11 14:47:38 as ** along with 1 person Terkko
  • notes Prevalence of autoantibodies to autonomic nervous tissue structures in Type 1 diabetes mellitus.
    Diabetic medicine : a journal of the British Diabetic Association, Vol. 16, No. 7. (July 1999), pp. 544-549.
    by N Ejskjaer, S Arif, W Dodds, MM Zanone, D Vergani, PJ Watkins, M Peakman
    posted to t1d autoantibody by vplagnol on 2008-07-11 14:45:50 as **
  • Detection rates for genotyping errors in SNPs using the trio design.
    Human heredity, Vol. 54, No. 3. (2002), pp. 111-117.
    by F Geller, A Ziegler
    posted to trios genotyping by vplagnol on 2008-07-01 08:27:14 as **
  • Mapping and sequencing of structural variation from eight human genomes
    Nature, Vol. 453, No. 7191. (2008), pp. 56-64.
    by Jeffrey M Kidd, Gregory M Cooper, William F Donahue, Hillary S Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N Yamada, Peter Tsang, Tera L Newman, Eray Tüzün, Ze Cheng, Heather M Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D Smith, Joshua M Korn, Steven A Mccarroll, David A Altshuler, Daniel A Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A Nickerson, James C Mullikin, Richard K Wilson, Laurakay Bruhn, Maynard V Olson, Rajinder Kaul, Douglas R Smith, Evan E Eichler
    posted to cnv by vplagnol on 2008-06-20 00:23:52 as ** along with 15 people and 1 group jyuh chrisamiller maximilianh kintoki chad_davis Ema hpaces aprasad kaniko psique shikin balicea djkt dchughes bpb GeneGo
  • Mapping and quantifying mammalian transcriptomes by RNA-Seq.
    Nature methods, Vol. in press (30 May 2008)
    by Ali Mortazavi, Brian AA Williams, Kenneth Mccue, Lorian Schaeffer, Barbara Wold
    posted to solexa mouse geneexpression by vplagnol on 2008-06-10 14:16:30 as ** along with 4 people myourshaw caseybrown GeeSharpMinor megraw
  • Differential Allelic Expression in the Human Genome: A Robust Approach To Identify Genetic and Epigenetic Cis-Acting Mechanisms Regulating Gene Expression
    PLoS Genet, Vol. 4, No. 2. (29 February 2008), e1000006.
    by David Serre, Scott Gurd, Bing Ge, Robert Sladek, Donna Sinnett, Eef Harmsen, Marina Bibikova, Eugene Chudin, David L Barker, Todd Dickinson, Jian-Bing Fan, Thomas J Hudson
    posted to geneexpression ase by vplagnol on 2008-06-10 12:38:11 as ** along with 1 person and 2 groups dpollard RockmanLab cis-regulatory-evolution
  • Psoriasis is associated with increased beta-defensin genomic copy number.
    Nat Genet, Vol. 40 (2 December 2007), pp. 23-25.
    by Edward JJ Hollox, Ulrike Huffmeier, Patrick LJML Zeeuwen, Raquel Palla, Jesús Lascorz, Diana Rodijk-Olthuis, Peter CMC van de Kerkhof, Heiko Traupe, Gys de Jongh, Martin, André Reis, John ALA Armour, Joost Schalkwijk
    posted to psoriasis cnv association by vplagnol on 2008-06-10 11:55:49 as ** along with 2 people bootsy caseybrown
  • Joint effects of HLA, INS, PTPN22 and CTLA4 genes on the risk of type 1 diabetes
    Diabetologia, Vol. 51, No. 4. (April 2008), pp. 589-596.
    by Bjornvold, , Undlien, , Joner, , Dahl-Jorgensen, , Njolstad, , Akselsen, , Gervin, , Ronningen, , Stene,
    posted to t1d ptpn22 ins ctla4 by vplagnol on 2008-06-10 11:41:08 as **
  • Mutation screening of PTPN22: association of the 1858T-allele with Addison's disease
    European Journal of Human Genetics, Vol. aop, No. current.
    by Beate Skinningsrud, Eystein S Husebye, Kristina Gervin, Kristian Løvås, Anne Blomhoff, Anette B Wolff, Helen E Kemp, Thore Egeland, Dag E Undlien
    posted to ptpn22 addison by vplagnol on 2008-06-10 11:38:20 as **
  • Genome-wide association studies for complex traits: consensus, uncertainty and challenges
    Nature Reviews Genetics, Vol. 9, No. 5. (2008), pp. 356-369.
    by Mark I Mccarthy, Gonçalo R Abecasis, Lon R Cardon, David B Goldstein, Julian Little, John PA Ioannidis, Joel N Hirschhorn
    posted to association by vplagnol on 2008-06-05 14:49:34 as ** along with 6 people xingxu ptrobajo echinotrix aconesa jyuh jonsta247
  • The Interaction of Selection and Linkage. I. General Considerations; Heterotic Models.
    Genetics, Vol. 49, No. 1. (January 1964), pp. 49-67.
    by RC Lewontin
    posted to statistics ld by vplagnol on 2008-06-05 10:01:57 as **
  • A robust statistical method for case-control association testing with Copy Number Variation
    Nature Genetics, Vol. in press (2008)
    by Chris Barnes, Vincent Plagnol, Jonathan Marchini, David Clayton, Matthew Hurles
    posted to statistics cnv association by vplagnol on 2008-06-03 18:26:47 as **
  • PTPN22 Trp620 explains the association of chromosome 1p13 with type 1 diabetes and shows a statistical interaction with HLA class II genotypes.
    Diabetes, Vol. 57, No. 6. (June 2008), pp. 1730-1737.
    by DJ Smyth, JD Cooper, JM Howson, NM Walker, V Plagnol, H Stevens, DG Clayton, JA Todd
    posted to ptpn22 hla association by vplagnol on 2008-06-03 07:14:19 as **
  • A genome-wide association study for celiac disease identifies risk variants in the region harboring IL2 and IL21
    Nature Genetics, Vol. 39, No. 7. (10 June 2007), pp. 827-829.
    by David A van Heel, Lude Franke, Karen A Hunt, Rhian Gwilliam, Alexandra Zhernakova, Mike Inouye, Martin C Wapenaar, Martin CNM Barnardo, Graeme Bethel, Geoffrey KT Holmes, Con Feighery, Derek Jewell, Dermot Kelleher, Parveen Kumar, Simon Travis, Julian RF Walters, David S Sanders, Peter Howdle, Jill Swift, Raymond J Playford, William M Mclaren, Luisa M Mearin, Chris J Mulder, Ross Mcmanus, Ralph Mcginnis, Lon R Cardon, Panos Deloukas, Cisca Wijmenga
    posted to il2 celiac association by vplagnol on 2008-06-03 06:38:21 as **
  • Cis-acting regulatory variation in the human genome.
    Science, Vol. 306, No. 5696. (22 October 2004), pp. 647-650.
    by T Pastinen, TJ Hudson
    posted to geneexpression ase by vplagnol on 2008-06-02 16:59:32 as ** along with 2 people qfwills mimulus_99
  • Newly identified genetic risk variants for celiac disease related to the immune response
    Nature Genetics, Vol. 40, No. 4. (02 March 2008), pp. 395-402.
    by Karen A Hunt, Alexandra Zhernakova, Graham Turner, Graham AR Heap, Lude Franke, Marcel Bruinenberg, Jihane Romanos, Lotte C Dinesen, Anthony W Ryan, Davinder Panesar, Rhian Gwilliam, Fumihiko Takeuchi, William M Mclaren, Geoffrey KT Holmes, Peter D Howdle, Julian RF Walters, David S Sanders, Raymond J Playford, Gosia Trynka, Chris JJ Mulder, Luisa M Mearin, Wieke HM Verbeek, Valerie Trimble, Fiona M Stevens, Colm O'Morain, Nicholas P Kennedy, Dermot Kelleher, Daniel J Pennington, David P Strachan, Wendy L Mcardle, Charles A Mein, Martin C Wapenaar, Panos Deloukas, Ralph Mcginnis, Ross Mcmanus, Cisca Wijmenga, David A van Heel
    posted to geneexpression celiac by vplagnol on 2008-06-02 12:42:43 as **
  • Mapping the Genetic Architecture of Gene Expression in Human Liver.
    PLoS biology, Vol. 6, No. 5. (6 May 2008)
    by Eric E Schadt, Cliona Molony, Eugene Chudin, Ke Hao, Xia Yang, Pek Y Lum, Andrew Kasarskis, Bin Zhang, Susanna Wang, Christine Suver, Jun Zhu, Joshua Millstein, Solveig Sieberts, John Lamb, Debraj Guhathakurta, Jonathan Derry, John D Storey, Iliana Avila-Campillo, Mark J Kruger, Jason M Johnson, Carol A Rohl, Atila van Nas, Margarete Mehrabian, Thomas A Drake, Aldons J Lusis, Ryan C Smith, Peter P Guengerich, Stephen C Strom, Erin Schuetz, Thomas H Rushmore, Roger Ulrich
    posted to rps26 geneexpression by vplagnol on 2008-05-14 16:16:12 as ** along with 6 people Jonesy ptrobajo semrich caseybrown ddunbar Schmidtc
  • The assessment of autoimmunological status and prevalence of different forms of celiac disease among children with type 1 diabetes mellitus and celiac disease.
    Mediators of inflammation, Vol. 2008 (2008)
    by G Deja, A Myrda, P Jarosz-Chobot, U Siekiera
    posted to autoantibody by vplagnol on 2008-04-28 20:33:58 as **
  • Ulcerative colitis and Crohn's disease in an unselected population of monozygotic and dizygotic twins. A study of heritability and the influence of smoking.
    Gut, Vol. 29, No. 7. (1 July 1988), pp. 990-996.
    by C Tysk, E Lindberg, G Jarnerot, B Floderus-Myrhed
    posted to ibd by vplagnol on 2008-04-24 23:31:19 as **
  • Genetics of gene expression and its effect on disease
    Nature, Vol. 452 (16 March 2008), pp. 423-428.
    by Valur Emilsson, Gudmar Thorleifsson, Bin Zhang, Amy S Leonardson, Florian Zink, Jun Zhu, Sonia Carlson, Agnar Helgason, Bragi G Walters, Steinunn Gunnarsdottir, Magali Mouy, Valgerdur Steinthorsdottir, Gudrun H Eiriksdottir, Gyda Bjornsdottir, Inga Reynisdottir, Daniel Gudbjartsson, Anna Helgadottir, Aslaug Jonasdottir, Adalbjorg Jonasdottir, Unnur Styrkarsdottir, Solveig Gretarsdottir, Kristinn P Magnusson, Hreinn Stefansson, Ragnheidur Fossdal, Kristleifur Kristjansson, Hjortur G Gislason, Tryggvi Stefansson, Bjorn G Leifsson, Unnur Thorsteinsdottir, John R Lamb, Jeffrey R Gulcher, Marc L Reitman, Augustine Kong, Eric E Schadt, Kari Stefansson
    posted to geneexpression by vplagnol on 2008-04-22 17:03:07 as ** along with 12 people and 1 group echinotrix Borelli jyuh smbe2008 natstreet sanchezbuelna djkt lp2 jo_davies shikin caseybrown ptrobajo GeneGo
  • A simplex method for function minimization
    The Computer Journal, Vol. 7 (1965), pp. 308-313.
    by JA Nelder, R Mead
    posted to statistics by vplagnol on 2008-04-21 14:59:23 as **
  • Use of unphased multilocus genotype data in indirect association studies.
    Genet Epidemiol, Vol. 27, No. 4. (December 2004), pp. 415-428.
    by D Clayton, J Chapman, J Cooper
    posted to ld by vplagnol on 2008-03-27 16:26:40 as **
  • Summaries of Affymetrix GeneChip probe level data.
    Nucleic Acids Res, Vol. 31, No. 4. (15 February 2003)
    by RA Irizarry, BM Bolstad, F Collin, LM Cope, B Hobbs, TP Speed
    posted to affymetrix geneexpression rma statistics by vplagnol on 2008-03-26 16:17:08 as ** along with 11 people srp33 bertelsen pcahan1 RMGraze aviad_work ghattem talponer heliopais wirawan waszak rschulz
  • Genetic analysis of genome-wide variation in human gene expression.
    Nature, Vol. 430, No. 7001. (12 August 2004), pp. 743-747.
    by M Morley, CM Molony, TM Weber, JL Devlin, KG Ewens, RS Spielman, VG Cheung
    posted to geneexpression by vplagnol on 2008-03-25 16:28:17 as ** along with 9 people and 1 group caseybrown snuppepuppan kentsis RMGraze adepace qfwills nagendraproj jo_davies mimulus_99 EisenLab
  • Alternative Analyses of Contingency Tables
    by John J Gart
    posted to statistics by vplagnol on 2008-03-22 22:33:19 as *****
  • Hierarchical Generalized Linear Models
    by Y Lee, JA Nelder
    posted to statistics by vplagnol on 2008-03-22 22:30:13 as ***** along with 1 person abrentnall
  • An Analysis of Transformations
    by GEP Box, DR Cox
    posted to statistics by vplagnol on 2008-03-22 22:29:29 as ***** along with 1 person kgajos
  • Linkage Disequilibrium in Humans: Models and Data
    The American Journal of Human Genetics, Vol. 69, No. 1. (July 2001), pp. 1-14.
    by Jonathan K Pritchard, Molly Przeworski
    posted to ld wtccc_class by vplagnol on 2008-03-06 21:34:00 as **
  • Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
    by Yoav Benjamini, Yosef Hochberg
    posted to fdr statistics wtccc_class by vplagnol on 2008-03-02 09:12:05 as ** along with 13 people and 2 groups isimpson dragonrez jyuh RMGraze oannes frohike grahamc shigepong ccr axelon ugengma amsantos rschulz Bioinformatics Regulomics_UCHSC
  • Direct multiplexed measurement of gene expression with color-coded probe pairs.
    Nat Biotechnol (17 February 2008)
    by Gary K K Geiss, Roger E E Bumgarner, Brian Birditt, Timothy Dahl, Naeem Dowidar, Dwayne L L Dunaway, H Perry P Fell, Sean Ferree, Renee D D George, Tammy Grogan, Jeffrey J J James, Malini Maysuria, Jeffrey D D Mitton, Paola Oliveri, Jennifer L L Osborn, Tao Peng, Amber L L Ratcliffe, Philippa J J Webster, Eric H H Davidson, Leroy Hood
    posted to geneexpression nanostring by vplagnol on 2008-03-01 10:22:02 as ** along with 6 people and 2 groups jfr psique jyuh austin GeeSharpMinor shikin parkinson's disease references GeneGo
  • Genetic structure of human populations.
    Science, Vol. 298, No. 5602. (20 December 2002), pp. 2381-2385.
    by NA Rosenberg, JK Pritchard, JL Weber, HM Cann, KK Kidd, LA Zhivotovsky, MW Feldman
    posted to structure wtccc_class by vplagnol on 2008-02-21 17:34:04 as ** along with 1 person kentsis
  • Principal components analysis corrects for stratification in genome-wide association studies
    Nature Genetics, Vol. 38, No. 8. (23 July 2006), pp. 904-909.
    by Alkes L Price, Nick J Patterson, Robert M Plenge, Michael E Weinblatt, Nancy A Shadick, David Reich
    posted to popgen structure wtccc_class by vplagnol on 2008-02-21 17:32:27 as ** along with 7 people jyuh sriram_s qmwwallace ryanraaum dalexander caseybrown StatAnika
  • Interferon-gamma induces expression of the interleukin 2 receptor gene in human monocytes.
    Eur J Immunol, Vol. 17, No. 1. (January 1987), pp. 153-156.
    by A Rambaldi, DC Young, F Herrmann, SA Cannistra, JD Griffin
    posted to geneexpression il2ra by vplagnol on 2008-02-15 11:38:02 as **
  • Generalized Linear Models, Second Edition
    (01 August 1989)
    by P Mccullagh, J Nelder
    posted to glm statistics wtccc_class by vplagnol on 2008-01-27 15:22:50 as ** along with 4 people abbie_riner brian dianella kohei-h
  • The Influence of CCL3L1 Gene-Containing Segmental Duplications on HIV-1/AIDS Susceptibility
    Science, Vol. 307, No. 5714. (04 March 2005), pp. 1434-1440.
    by Enrique Gonzalez, Hemant Kulkarni, Hector Bolivar, Andrea Mangano, Racquel Sanchez, Gabriel Catano, Robert J Nibbs, Barry I Freedman, Marlon P Quinones, Michael J Bamshad, Krishna K Murthy, Brad H Rovin, William Bradley, Robert A Clark, Stephanie A Anderson, Robert J O'Connell, Brian K Agan, Seema S Ahuja, Rosa Bologna, Luisa Sen, Matthew J Dolan, Sunil K Ahuja
    posted to ccl3l1 cnv by vplagnol on 2008-01-20 21:47:05 as ** along with 2 people mercaptan tkershaw
  • X inactivation patterns of closely, but not distantly, related cells are highly correlated: little evidence for stem cell plasticity in normal females.
    Stem Cells, Vol. 24, No. 11. (November 2006), pp. 2398-2405.
    by MA Vickers, SJ Canning, WL Craig, NM Masson, IJ Wilson
    posted to x-chromosome-inactivation by vplagnol on 2008-01-18 15:03:33 as ** along with 2 people sebastien_vigneau Manchester
  • No evidence that skewing of X chromosome inactivation patterns is transmitted to offspring in humans.
    J Clin Invest, Vol. 118, No. 1. (January 2008), pp. 333-341.
    by V Bolduc, P Chagnon, S Provost, MP Dubé, C Belisle, M Gingras, L Mollica, L Busque
    posted to x-chromosome-inactivation by vplagnol on 2008-01-17 17:37:03 as **
  • Statistical Models in Epidemiology
    (11 August 1993)
    by David Clayton, Michael Hills
    posted to epidemiology statistics wtccc_class by vplagnol on 2008-01-16 08:53:53 as ****
  • Guilt beyond a reasonable doubt
    Nature Genetics, Vol. 39, No. 7., pp. 813-815.
    by David Altshuler, Mark Daly
    posted to association wtccc_class by vplagnol on 2008-01-13 16:07:09 as ***** along with 4 people jasonflannick mimulus_99 hpiwowar jasonbobe
  • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    Nature, Vol. 447, No. 7145. (7 June 2007), pp. 661-678.
    by WTCCC
    posted to association wtccc wtccc_class by vplagnol on 2008-01-13 11:55:49 as ***** along with 20 people and 3 groups balicea wenhui ramensky raiyar jyuh jfr yas hpiwowar larios frohike qmwwallace joepickrell massivemayhem Garamonfok PredictER hms jo_davies psique caseybrown mcgannd parkinson's disease references Bioinformatics T_lab
  • Common genetic variants account for differences in gene expression among ethnic groups.
    Nat Genet, Vol. 39 (7 January 2007), pp. 226-231.
    by Richard S Spielman, Laurel A Bastone, Joshua T Burdick, Michael Morley, Warren J Ewens, Vivian G Cheung
    posted to geneexpression by vplagnol on 2008-01-09 18:05:43 as ** along with 6 people and 4 groups aprasad balicea dchughes adepace mgaldzic xingxu EisenLab G4ID CHIP Genetics-of-Gambling
  • A Versatile Assay for High-Throughput Gene Expression Profiling on Universal Array Matrices
    Genome Res., Vol. 14, No. 5. (1 May 2004), pp. 878-885.
    by Jian-Bing Fan, Joanne M Yeakley, Marina Bibikova, Eugene Chudin, Eliza Wickham, Jing Chen, Dennis Doucet, Philippe Rigault, Baohong Zhang, Richard Shen, Celeste Mcbride, Hai-Ri Li, Xiang-Dong Fu, Arnold Oliphant, David L Barker, Mark S Chee
    posted to dasl geneexpression by vplagnol on 2008-01-08 12:26:23 as ** along with 1 person stsaft
  • A Method for High-Throughput Gene Expression Signature Analysis
    Genome Biology, Vol. 7 (19 July 2006), R61.
    by David Peck, Emily D Crawford, Kenneth N Ross, Kimberly Stegmaier, Todd R Golub, Justin Lamb
    posted to dasl geneexpression luminex by vplagnol on 2008-01-08 12:21:23 as ** along with 1 person jfr
  • A genome-wide association study of global gene expression
    Nature Genetics, Vol. 39, No. 10. (16 September 2007), pp. 1202-1207.
    by Anna L Dixon, Liming Liang, Miriam F Moffatt, Wei Chen, Simon Heath, Kenny CC Wong, Jenny Taylor, Edward Burnett, Ivo Gut, Martin Farrall, Mark G Lathrop, Gonçalo R Abecasis, William OC Cookson
    posted to geneexpression by vplagnol on 2008-01-07 17:15:22 as ** along with 5 people balicea rdiaz djkt jo_davies mimulus_99
  • Two-Dimensional Transcriptome Profiling: Identification of Messenger RNA Isoform Signatures in Prostate Cancer from Archived Paraffin-Embedded Cancer Specimens
    Cancer Res, Vol. 66, No. 8. (15 April 2006), pp. 4079-4088.
    by Hai-Ri Li, Jessica Wang-Rodriguez, Murlidharan T Nair, Joanne M Yeakley, Young-Soo Kwon, Marina Bibikova, Christina Zheng, Lixin Zhou, Kui Zhang, Tracy Downs, Xiang-Dong Fu, Jian-Bing Fan
    posted to dasl geneexpression by vplagnol on 2008-01-07 01:30:24 as ** along with 2 people jfr cberry
  • Profiling alternatively spliced mRNA isoforms for prostate cancer classification
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Chaolin Zhang, Hai R Li, Jian B Fan, Jessica W Rodriguez, Tracy Downs, Xiang D Fu, Michael Zhang
    posted to dasl geneexpression by vplagnol on 2008-01-07 01:28:43 as **
  • Widespread Monoallelic Expression on Human Autosomes
    Science, Vol. 318, No. 5853. (16 November 2007), pp. 1136-1140.
    by Alexander Gimelbrant, John N Hutchinson, Benjamin R Thompson, Andrew Chess
    posted to geneexpression by vplagnol on 2007-12-20 14:22:41 as ** along with 7 people vmsr djkt giovanni qwermish oelemento caseybrown stoffreg
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