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vrich's library [178 articles]

Recent papers added to vrich's library.
  • The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families.
    PLoS Biol, Vol. 5, No. 3. (13 March 2007)
    by Shibu Yooseph, Granger Sutton, Douglas B B Rusch, Aaron L L Halpern, Shannon J J Williamson, Karin Remington, Jonathan A A Eisen, Karla B B Heidelberg, Gerard Manning, Weizhong Li, Lukasz Jaroszewski, Piotr Cieplak, Christopher S S Miller, Huiying Li, Susan T T Mashiyama, Marcin P P Joachimiak, Christopher van Belle, John-Marc M Chandonia, David A A Soergel, Yufeng Zhai, Kannan Natarajan, Shaun Lee, Benjamin J J Raphael, Vineet Bafna, Robert Friedman, Steven E E Brenner, Adam Godzik, David Eisenberg, Jack E E Dixon, Susan S S Taylor, Robert L L Strausberg, Marvin Frazier, J Craig C Venter
    posted to community_genomics by vrich on 2008-05-15 22:01:13 as ** along with 3 people and 1 group jmeppley kaspermunch michC Bioinformatics
  • Metagenomics of the Deep Mediterranean, a Warm Bathypelagic Habitat
    PLoS ONE
    posted to oceans community_genomics by vrich on 2008-05-15 22:01:03 as **
  • Nitrogen fixation by Trichodesmium spp.: An important source of new nitrogen to the tropical and subtropical North Atlantic Ocean
    Global Biogeochemical Cycles, Vol. 19 (8 June 2005), GB2024.
    by Douglas G Capone, James A Burns, Joseph P Montoya, Ajit Subramaniam, Claire Mahaffey, Troy Gunderson, Anthony F Michaels, Edward J Carpenter
    posted to trichodesmium n_cycle by vrich on 2008-05-15 21:49:44 as **
  • Spatial coupling of nitrogen inputs and losses in the ocean
    Nature, Vol. 445, No. 7124., pp. 163-167.
    by Curtis Deutsch, Jorge L Sarmiento, Daniel M Sigman, Nicolas Gruber, John P Dunne
    posted to n_cycle by vrich on 2008-05-15 21:49:26 as **
  • Proteorhodopsins: an array of physiological roles?
    Nature Reviews Microbiology
    posted to pr by vrich on 2008-05-15 21:46:20 as **
  • Low nitrate:phosphate ratios in the global ocean
    Nature, Vol. 387, No. 6635. (19 June 1997), pp. 793-796.
    by T Tyrrell, CS Law
    posted to np n_cycle modeling by vrich on 2008-05-15 21:45:39 as **
  • The relative influences of nitrogen and phosphorus on oceanic primary production
    Nature, Vol. 400, No. 6744. (1999), pp. 525-531.
    by Toby Tyrrell
    posted to n_cycle modeling by vrich on 2008-05-15 21:45:24 as **
  • Oceanography A bigger nitrogen fix
    Nature, Vol. 436, No. 7052. (10 August 2005), pp. 786-787.
    by Nicolas Gruber
    posted to n_cycle by vrich on 2008-05-15 21:45:14 as **
  • Oceanography: A marine nitrogen cycle fix?
    Nature, Vol. 445, No. 7124. (10 January 2007), pp. 159-160.
    by Douglas G Capone, Angela N Knapp
    posted to n_cycle by vrich on 2008-05-15 21:45:07 as ** along with 1 person and 2 groups kinestetika anammox microbiology_nijmegen
  • An Earth-system perspective of the global nitrogen cycle
    Nature, Vol. 451, No. 7176. (16 January 2008), pp. 293-296.
    by Nicolas Gruber, James N Galloway
    posted to n_cycle by vrich on 2008-05-15 21:45:00 as ** along with 1 person emayorga
  • Anammox bacteria: from discovery to application
    Nature Reviews Microbiology, Vol. 6, No. 4., pp. 320-326.
    by Gijs J Kuenen
    posted to n_cycle anammox by vrich on 2008-05-15 21:44:52 as ** along with 2 people and 2 groups mjetten Huub_odc anammox microbiology_nijmegen
  • Resourceful heterotrophs make the most of light in the coastal ocean
    Nature Reviews Microbiology, Vol. 5, No. 10., pp. 792-800.
    by Mary A Moran, William L Miller
    posted to pr photoheterotrophy c_cycle by vrich on 2008-05-15 21:32:59 as **
  • Bacterial carbon processing by generalist species in the coastal ocean
    Nature (27 January 2008)
    by Xiaozhen Mou, Shulei Sun, Robert A Edwards, Robert E Hodson, Mary A Moran
    posted to sulfur doc dmsp community_genomics 454 by vrich on 2008-05-15 21:30:07 as ** along with 1 person cmzmasek
  • Bacterial taxa that limit sulfur flux from the ocean.
    Science, Vol. 314, No. 5799. (27 October 2006), pp. 649-652.
    by EC Howard, JR Henriksen, A Buchan, CR Reisch, H Bürgmann, R Welsh, W Ye, JM González, K Mace, SB Joye, RP Kiene, WB Whitman, MA Moran
    posted to sulfur dmsp by vrich on 2008-05-15 21:24:07 as ** along with 1 person bluto
  • Biological and chemical consequences of the 1997-1998 El Niño in central California waters
    Progress In Oceanography, Vol. 54, No. 1-4. ( 2002), pp. 205-232.
    by FP Chavez, JT Pennington, CG Castro, JP Ryan, RP Michisaki, B Schlining, P Walz, KR Buck, A Mcfadyen, CA Collins
    posted to monterey_bay el_nino by vrich on 2008-05-14 18:21:52 as **
  • Primary production in the eastern tropical Pacific: A review
    Progress In Oceanography, Vol. 69, No. 2-4. ( 2006), pp. 285-317.
    by Timothy J Pennington, Kevin L Mahoney, Victor S Kuwahara, Dorota D Kolber, Ruth Calienes, Francisco P Chavez
    posted to pacific monterey_bay by vrich on 2008-05-14 18:11:48 as **
  • Seasonal and annual distribution of organic contaminants in marine sediments from Elkhorn slough, moss landing harbor and nearshore Monterey Bay, California
    Environmental Pollution, Vol. 82, No. 1. (1993), pp. 79-91.
    by David W Rice, Craig P Seltenrich, Robert B Spies, Marilyn L Keller
    posted to pollutants monterey_bay by vrich on 2008-05-14 03:22:43 as **
  • Unsuspected diversity among marine aerobic anoxygenic phototrophs.
    Nature, Vol. 415, No. 6872. (7 February 2002), pp. 630-633.
    by O Béjà, MT Suzuki, JF Heidelberg, WC Nelson, CM Preston, T Hamada, JA Eisen, CM Fraser, EF DeLong
    posted to monterey_bay aap by vrich on 2008-05-14 03:17:51 as ** along with 1 person jmeppley
  • Proteorhodopsin genes are distributed among divergent marine bacterial taxa.
    Proc Natl Acad Sci U S A, Vol. 100, No. 22. (28 October 2003), pp. 12830-12835.
    by JR de la Torre, LM Christianson, O Béjà, MT Suzuki, DM Karl, J Heidelberg, EF DeLong
    posted to pr monterey_bay by vrich on 2008-05-14 03:16:49 as ** along with 1 person and 1 group beatrizfernandez Microbial-Ecology
  • Coupled Photochemical and Enzymatic Mn(II) Oxidation Pathways of a Planktonic Roseobacter-Like Bacterium
    Appl. Environ. Microbiol., Vol. 72, No. 5. (1 May 2006), pp. 3543-3549.
    by Colleen M Hansel, Chris A Francis
    posted to roseobacter monterey_bay by vrich on 2008-05-14 03:11:48 as **
  • Biological and Chemical Response of the Equatorial Pacific Ocean to the 1997-98 El Niño
    Science, Vol. 286, No. 5447. (10 December 1999), pp. 2126-2131.
    by FP Chavez, PG Strutton, GE Friederich, RA Feely, GC Feldman, DG Foley, MJ Mcphaden
    posted to pacific el_nino by vrich on 2008-05-14 02:58:47 as **
  • From the Cover: Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis
    Proceedings of the National Academy of Sciences, Vol. 104, No. 8. (20 February 2007), pp. 2891-2896.
    by Bernhard M Fuchs, Stefan Spring, Hanno Teeling, Christian Quast, Jorg Wulf, Martha Schattenhofer, Shi Yan, Steve Ferriera, Justin Johnson, Frank O Glockner, Rudolf Amann
    posted to om60 kt71 aap by vrich on 2008-05-14 02:56:49 as **
  • From Anchovies to Sardines and Back: Multidecadal Change in the Pacific Ocean
    Science, Vol. 299, No. 5604. (10 January 2003), pp. 217-221.
    by Francisco P Chavez, John Ryan, Salvador E Lluch-Cota, Niquen
    posted to pacific monterey_bay el_nino by vrich on 2008-05-14 02:56:15 as ** along with 1 person mullonc
  • Relationship of Temporal and Spatial Variabilities of Ammonia-Oxidizing Bacteria to Nitrification Rates in Monterey Bay, California
    Appl. Environ. Microbiol., Vol. 71, No. 2. (1 February 2005), pp. 697-705.
    by GD O'Mullan, BB Ward
    posted to monterey_bay by vrich on 2008-05-14 02:22:26 as **
  • Prevalence of the Chloroflexi-Related SAR202 Bacterioplankton Cluster throughout the Mesopelagic Zone and Deep Ocean
    Appl. Environ. Microbiol., Vol. 70, No. 5. (1 May 2004), pp. 2836-2842.
    by RM Morris, MS Rappe, E Urbach, SA Connon, SJ Giovannoni
    posted to sar202 by vrich on 2008-05-14 02:22:05 as **
  • Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre
    Environmental Microbiology, Vol. 9, No. 5. (May 2007), pp. 1162-1175.
    by Mincer, J Tracy, Church, J Matthew, Taylor, Lance Trent, Preston, Christina, Karl, M David, Delong, F Edward
    posted to monterey_bay hot by vrich on 2008-05-14 02:15:08 as ** along with 3 people and 2 groups jmeppley michC kinestetika anammox microbiology_nijmegen
  • Using HPLC pigment analysis to investigate phytoplankton taxonomy: the importance of knowing your species
    Helgoland Marine Research, Vol. 58, No. 2. (1 April 2004), pp. 77-82.
    by Xabier Irigoien, Bettina Meyer, Roger Harris, Derek Harbour
    posted to pigments by vrich on 2008-05-13 03:30:52 as **
  • Biosynthesis of 2-methylbacteriohopanepolyols by an anoxygenic phototroph
    Proceedings of the National Academy of Sciences, Vol. 104, No. 38. (18 September 2007), pp. 15099-15104.
    by Sky E Rashby, Alex L Sessions, Roger E Summons, Dianne K Newman
    posted to lipids by vrich on 2008-05-12 00:09:08 as **
  • Quantitative comparisons ofin situ microbial biodiversity by signature biomarker analysis
    Journal of Industrial Microbiology and Biotechnology, Vol. 17, No. 3. (1996), pp. 185-196.
    by DC White, JO Stair, DB Ringelberg
    posted to lipids by vrich on 2008-05-12 00:06:02 as **
  • Lipid biomarkers for heterotrophic alteration of suspended particulate organic matter in oxygenated and anoxic water columns of the ocean
    Deep Sea Research Part I: Oceanographic Research Papers, Vol. 42, No. 10. (October 1995), pp. 1749-1771.
    by Stuart G Wakeham
    posted to lipids by vrich on 2008-05-12 00:05:17 as **
  • Linking microbial community composition and soil processes in a California annual grassland and mixed-conifer forest
    Biogeochemistry, Vol. 73, No. 2. (5 April 2005), pp. 395-415.
    by Teri C Balser, Mary K Firestone
    posted to lipids by vrich on 2008-05-12 00:04:35 as **
  • Combined Phospholipid Biomarker-16S rRNA Gene Denaturing Gradient Gel Electrophoresis Analysis of Bacterial Diversity and Physiological Status in an Intertidal Microbial Mat
    Appl. Environ. Microbiol., Vol. 70, No. 11. (1 November 2004), pp. 6920-6926.
    by Laura Villanueva, Antoni Navarrete, Jordi Urmeneta, David C White, Ricardo Guerrero
    posted to lipids by vrich on 2008-05-12 00:02:57 as ** along with 1 person and 1 group jdelcampo Microbial-Ecology
  • Monitoring Diel Variations of Physiological Status and Bacterial Diversity in an Estuarine Microbial Mat: An Integrated Biomarker Analysis.
    Microb Ecol (9 March 2007)
    by Laura Villanueva, Antoni Navarrete, Jordi Urmeneta, Roland Geyer, David C White, Ricardo Guerrero
    posted to lipids by vrich on 2008-05-11 23:51:07 as ** along with 2 people and 1 group jdelcampo rvgomes Microbial-Ecology
  • PLFA Profiling of Microbial Community Structure and Seasonal Shifts in Soils of a Douglas-fir Chronosequence
    Microbial Ecology, Vol. 55, No. 3. (April 2008), pp. 500-511.
    by Moore-Kucera, Jennifer, Dick, Richard
    posted to lipids by vrich on 2008-05-11 23:50:26 as **
  • Analysis of archaeal core ether lipids using Time of FlightSecondary Ion Mass Spectrometry (ToF-SIMS): Exploring a new prospect for the study of biomarkers in geobiology
    Geobiology, Vol. 5, No. 1. (March 2007), pp. 75-83.
    by V Thiel, J Toporski, G Schumann, P Sjovall, J Lausmaa
    posted to lipids by vrich on 2008-05-11 23:43:03 as **
  • Bacterial flora typing with deep, targeted, chip-based Pyrosequencing
    BMC Microbiology, Vol. 7 (30 November 2007), 108.
    by Andreas Sundquist, Saharnaz Bigdeli, Roxana Jalili, Maurice L Druzin, Sarah Waller, Krisin M Pullen, Yasser Y El-Sayed, Mark M Taslimi, Serafim Batzoglou, Mostafa Ronaghi
    posted to 454 16srrna by vrich on 2008-05-11 23:39:56 as **
  • Pyrosequencing enumerates and contrasts soil microbial diversity
    ISME J, Vol. 1, No. 4. (5 July 2007), pp. 283-290.
    by Luiz F Roesch, Roberta R Fulthorpe, Alberto Riva, George Casella, Alison K Hadwin, Angela D Kent, Samira H Daroub, Flavio A Camargo, William G Farmerie, Eric W Triplett
    posted to 454 by vrich on 2008-05-11 23:34:38 as **
  • Short pyrosequencing reads suffice for accurate microbial community analysis
    Nucl. Acids Res., Vol. 35, No. 18. (25 September 2007), e120.
    by Zongzhi Liu, Catherine Lozupone, Micah Hamady, Frederic D Bushman, Rob Knight
    posted to 454 by vrich on 2008-05-11 23:30:20 as ** along with 1 person niallhaslam
  • Microbial Response to Heavy Metal-Polluted Soils: Community Analysis from Phospholipid-Linked Fatty Acids and Ester-Linked Fatty Acids Extracts
    J Environ Qual, Vol. 34, No. 5. (8 September 2005), pp. 1789-1800.
    by Belen M Hinojosa, Jose A Carreira, Roberto Garcia-Ruiz, Richard P Dick
    posted to lipids by vrich on 2008-05-11 23:11:07 as **
  • Comparison of Fatty Acid Methyl Ester (FAME) Methods for Characterizing Microbial Communities
    Soil Sci Soc Am J, Vol. 64, No. 5. (1 September 2000), pp. 1659-1668.
    by Mary E Schutter, Richard P Dick
    posted to lipids by vrich on 2008-05-11 23:00:30 as **
  • Metagenomic and small-subunit rRNA analyses of the genetic diversity of bacteria, archaea, fungi, and viruses in soil
    Appl. Environ. Microbiol. (7 September 2007), AEM.00358-07.
    by Noah Fierer, Mya Breitbart, James Nulton, Peter Salamon, Catherine Lozupone, Ryan Jones, Michael Robeson, Robert A Edwards, Ben Felts, Steve Rayhawk, Rob Knight, Forest Rohwer, Robert B Jackson
    posted to community_genomics 454 16srrna by vrich on 2008-05-11 22:42:32 as ** along with 2 people mellabee kerekesj
  • Metagenomics: application of genomics to uncultured microorganisms.
    Microbiol Mol Biol Rev, Vol. 68, No. 4. (December 2004), pp. 669-685.
    by J Handelsman
    posted to community_genomics by vrich on 2008-05-11 22:28:32 as ** along with 2 people mcox knaseanka
  • New approaches to analyzing microbial biodiversity data
    Current Opinion in Microbiology, Vol. 6, No. 3. (June 2003), pp. 282-287.
    by Brendan JM Bohannan, Jennifer Hughes
    posted to stats by vrich on 2008-05-11 22:24:10 as ** along with 1 person jmeppley
  • Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity
    Appl. Environ. Microbiol., Vol. 67, No. 10. (1 October 2001), pp. 4399-4406.
    by Jennifer B Hughes, Jessica J Hellmann, Taylor H Ricketts, Brendan J Bohannan
    posted to stats by vrich on 2008-05-11 22:23:51 as ** along with 5 people and 1 group mcox Olaf_Ilzins jmeppley Stenuite andrewirwin Biological oceanography
  • Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes
    Appl. Environ. Microbiol., Vol. 72, No. 3. (1 March 2006), pp. 1719-1728.
    by Peter H Janssen
    posted to clone_libraries 16srrna by vrich on 2008-05-11 22:21:42 as ** along with 1 person mcox
  • Metagenome microarray for screening of fosmid clones containing specific genes
    FEMS Microbiology Letters, Vol. 0, No. 0. (0), pp. ???-???.
    by Soo J Park, Cheol H Kang, Jong C Chae, Sung K Rhee
    posted to microarray fosmid_microarray by vrich on 2008-05-11 22:14:29 as **
  • TOPO TA is A-OK: a test of phylogenetic bias in fungal environmental clone library construction
    Environmental Microbiology, Vol. 9, No. 5. (May 2007), pp. 1329-1334.
    by Taylor, D Lee, Herriott, C Ian, Long, James, O'Neill, Keith
    posted to cloning_bias by vrich on 2008-05-11 21:59:48 as **
  • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
    Antonie van Leeuwenhoek, Vol. 73, No. 1. (1 January 1998), pp. 127-141.
    by Gerard Muyzer, Kornelia Smalla
    posted to dgge by vrich on 2008-05-11 19:11:19 as **
  • Diversity of ammonia monooxygenase operon in autotrophic ammonia-oxidizing bacteria
    Archives of Microbiology, Vol. 177, No. 2. (1 February 2002), pp. 139-149.
    by Jeanette Norton, Javier Alzerreca, Yuichi Suwa, Martin Klotz
    posted to lh-pcr autotrophs amoa by vrich on 2008-05-11 03:49:43 as **
  • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    Applied and Environmental Microbiology, Vol. 62, No. 2., 625.
    by Suzuki
    posted to pcr_bias pcr 16srrna by vrich on 2008-05-11 02:25:59 as **
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