waszak's affymetrix [32 articles] Export

Recent papers added to waszak's library classified by the tag affymetrix. You can also see everyone's affymetrix.

	Regulation of rtt107 recruitment to stalled DNA replication forks by the cullin rtt101 and the rtt109 acetyltransferase. [My Copy] Molecular biology of the cell, Vol. 19, No. 1. (January 2008), pp. 171-180. by T. M. Roberts, I. W. Zaidi, J. A. Vaisica, M. Peter, G. W. Brown posted to affymetrix microarray tiling yeast by waszak on 2008-10-08 17:43:34 as
	Integrated detection and population-genetic analysis of SNPs and copy number variation. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1166-1174. by Steven A. McCarroll, Finny G. Kuruvilla, Joshua M. Korn, et al.Simon Cawley, James Nemesh, Alec Wysoker, Michael H. Shapero, Paul I. de Bakker, Julian B. Maller, Andrew Kirby, Amanda L. Elliott, Melissa Parkin, Earl Hubbell, Teresa Webster, Rui Mei, James Veitch, Patrick J. Collins, Robert Handsaker, Steve Lincoln, Marcia Nizzari, John Blume, Keith W. Jones, Rich Rava, Mark J. Daly, Stacey B. Gabriel, David Altshuler posted to affymetrix cnv genetics hapmap snp by waszak on 2008-10-08 15:11:10 as along with 19 people and 1 group vplagnol buyske turnersd sameersoi gruberjd Hans45 pdexheimer madreach caseybrown rsantana Zephyrus psique jbsaltz Ema misonneh djkt daed rdiaz guhjy Roswell Cancer Crosstalk
	A robust statistical method for case-control association testing with copy number variation. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1245-1252. by Chris Barnes, Vincent Plagnol, Tomas Fitzgerald, et al.Richard Redon, Jonathan Marchini, David Clayton, Matthew E. Hurles posted to affymetrix algorithm associationstudy cnv em gmm ld r snp software by waszak on 2008-10-08 15:01:08 as along with 15 people and 1 group daed zufar daforerog pengchy ptrobajo vplagnol caseybrown Zephyrus dakelley buyske misonneh djkt rdiaz Stew guhjy Roswell Cancer Crosstalk
	Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays. [My Copy] Genome research, Vol. 16, No. 12. (1 December 2006), pp. 1575-1584. by Daisuke Komura, Fan Shen, Shumpei Ishikawa, et al.Karen R. Fitch, Wenwei Chen, Jane Zhang, Guoying Liu, Sigeo Ihara, Hiroshi Nakamura, Matthew E. Hurles, Charles Lee, Stephen W. Scherer, Keith W. Jones, Michael H. Shapero, Jing Huang, Hiroyuki Aburatani posted to affymetrix algorithm cnv genome human microarray snp by waszak on 2008-10-08 14:40:40 as along with 10 people and 4 groups shikin rdiaz jfr dchughes giovanni jeremymiller frohike vpschulz shigepong debasis Bioinformatics G4ID GeschwindLab Genetics-of-Gambling
	Effect of polymorphisms within probe-target sequences on olignonucleotide microarray experiments [My Copy] Nucl. Acids Res., Vol. 36, No. 13. (1 August 2008), pp. 4417-4423. by David Benovoy, Tony Kwan, Jacek Majewski posted to affymetrix csh exon microarray snp by waszak on 2008-10-07 22:40:50 as along with 3 people jfr GeeSharpMinor caseybrown
	Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data [My Copy] Nucl. Acids Res., Vol. 33, No. 20. (10 November 2005), pp. e175-e175. by Manhong Dai, Pinglang Wang, Andrew D. Boyd, et al.Georgi Kostov, Brian Athey, Edward G. Jones, William E. Bunney, Richard M. Myers, Terry P. Speed, Huda Akil, Stanley J. Watson, Fan Meng posted to affymetrix genechip microarray by waszak on 2008-08-16 01:09:07 as along with 11 people and 2 groups rmk lwaldron giovenko pcahan1 frohike incovoma nicholso heliopais Montrachet shikin bertelsen Bioinformatics GeneGo
	Probe selection and expression index computation of affymetrix exon arrays. [My Copy] PLoS ONE, Vol. 1 (2006) by Y. Xing, K. Kapur, W. H. Wong posted to affymetrix algorithm huex hugene by waszak on 2008-08-15 15:50:05 as along with 2 people neils jfr
	Alternative splicing in colon, bladder, and prostate cancer identified by exon-array analysis [My Copy] Mol Cell Proteomics (18 March 2008), M700590-MCP200. by Kasper Thorsen, Karina D. Sorensen, Anne S. Brems-Eskildsen, et al.Charlotte Modin, Mette Gaustadnes, Anne-Mette K. Hein, Mogens Kruhoffer, Soren Laurberg, Michael Borre, Kai Wang, Soren Brunak, Adrian R. Krainer, Niels Torring, Lars Dyrskjot, Claus L. Andersen, Torben F. Orntoft posted to affymetrix cancer hugene splicing by waszak on 2008-04-10 16:54:10 as along with 2 people jo_davies jfr
	Polymorphism Interaction Analysis (PIA): a method for investigating complex gene-gene interactions. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008), 146. by Leah E. Mechanic, Brian T. Luke, Julie E. Goodman, Stephen J. Chanock, Curtis C. Harris posted to affymetrix algorithm snps by waszak on 2008-03-07 09:32:25 as along with 4 people dswan daforerog guhjy omalbam
	Normalization of oligonucleotide arrays based on the least-variant set of genes [My Copy] BMC Bioinformatics, Vol. 9 (05 March 2008), 140. by Stefano Calza, Davide Valentini, Yudi Pawitan posted to affymetrix algorithm normalization by waszak on 2008-03-07 09:32:06 as along with 5 people bertelsen guhjy jfr giovenko GeeSharpMinor
	Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. [My Copy] Genome Biol, Vol. 6, No. 2. (2005) by S. E. Choe, M. Boutros, A. M. Michelson, G. M. Church, M. S. Halfon posted to affymetrix analysis genechip methodology by waszak on 2008-01-30 14:59:12 as along with 8 people and 1 group bertelsen lwaldron heliopais xwbcn jeremymiller ccr ghattem daforerog GeschwindLab
	A comparison of Affymetrix gene expression arrays [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Mark Robinson, Terence Speed posted to affymetrix exon huex hugene by waszak on 2008-01-30 14:06:16 as along with 3 people sebastien_vigneau jfr hpaces
	Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array [My Copy] BMC Genomics, Vol. 7 (27 December 2006), 325. by Paul J. Gardina, Tyson A. Clark, Brian Shimada, et al.Michelle K. Staples, Qing Yang, James Veitch, Anthony Schweitzer, Tarif Awad, Charles Sugnet, Suzanne Dee, Christopher Davies, Alan Williams, Yaron Turpaz posted to affymetrix cancer colon exon splicing by waszak on 2008-01-30 14:04:56 as along with 2 people jfr srp33
	Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA [My Copy] BMC Biotechnology, Vol. 7 (13 September 2007), 57. by Karol L. Thompson, Scott P. Pine, Barry A. Rosenzweig, Yaron Turpaz, Jacques Retief posted to affymetrix microarray quality rna by waszak on 2008-01-30 14:02:28 as along with 2 people jfr caseybrown
	oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 24. (15 December 2007), pp. 3406-3408. by Remo Sanges, Francesca Cordero, Raffaele A. Calogero posted to affymetrix bioconductor r software by waszak on 2007-12-10 14:27:34 as along with 4 people daforerog renatomilani guhjy rdiaz
	The utility of MAS5 expression summary and detection call algorithms [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Stuart Pepper, Emma Saunders, Laura Edwards, Claire Wilson, Crispin Miller posted to affymetrix algorithm normalization by waszak on 2007-12-03 21:08:03 as along with 7 people dswan lwaldron frohike heliopais jfr ryanraaum wirawan
	RReportGenerator: automatic reports from routine statistical analysis using R. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 2. (15 January 2008), pp. 276-278. by Wolfgang Raffelsberger, Yannick Krause, Luc Moulinier, et al.David Kieffer, Anne-Laure L. Morand, Laurent Brino, Olivier Poch posted to affymetrix r by waszak on 2007-12-03 20:39:09 as along with 9 people daforerog bertelsen natstreet druvus guhjy jfr mailund maralena GeeSharpMinor
	Filtering genes to improve sensitivity in oligonucleotide microarray data analysis. [My Copy] Nucleic Acids Res (15 August 2007) by Stefano Calza, Wolfgang Raffelsberger, Alexander Ploner, Jose Sahel, Thierry Leveillard, Yudi Pawitan posted to affymetrix normalization by waszak on 2007-12-03 20:18:23 as along with 8 people bertelsen heliopais frohike guhjy jfr rdiaz niallhaslam laral
	BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips [My Copy] BMC Bioinformatics, Vol. 8 (12 November 2007), 439. by Ernest Turro, Natalia Bochkina, Anne-Mette K. Hein, Sylvia Richardson posted to affymetrix algorithm bayesian bioconductor bioinformatics software statistics by waszak on 2007-11-16 09:35:31 as along with 3 people guhjy jfr shigepong
	Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes. [My Copy] BMC systems biology, Vol. 1 (2007) by Pierre R. Bushel, Russell D. Wolfinger, Greg Gibson posted to affymetrix microarray software by waszak on 2007-11-14 11:00:55 as along with 1 person jfr
	RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis. [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2825-2827. by F. Hong, R. Breitling, C. W. McEntee, B. S. Wittner, J. L. Nemhauser, J. Chory posted to affymetrix bioconductor microarray software by waszak on 2007-11-13 21:43:39 as along with 2 people jfr sanchezbuelna
	CoXpress: differential co-expression in gene expression data. [My Copy] BMC bioinformatics, Vol. 7 (20 November 2006), 509. by Michael Watson posted to affymetrix co-expression microarray networks software statistics by waszak on 2007-11-13 21:28:58 as along with 5 people ptrobajo jfr dquest shigepong dps
	GGtools: analysis of genetics of gene expression in bioconductor. [My Copy] Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 522-523. by V. J. Carey, M. Morgan, S. Falcon, R. Lazarus, R. Gentleman posted to affymetrix bioconductor microarray software by waszak on 2007-11-13 21:12:54 as along with 3 people guhjy jfr sanchezbuelna
	Microarray Blob-Defect Removal Improves Array Analysis. [My Copy] Bioinformatics (1 March 2007) by Jun S S. Song, Kaveh Maghsoudi, Wei Li, Edward Fox, John Quackenbush, X Shirley Liu posted to affymetrix microarray software tiling by waszak on 2007-11-13 20:57:22 as along with 5 people and 1 group jfr kengg shigepong ghattem caseybrown Plantandetc
	How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by F. F. Millenaar, J. Okyere, S. T. May, M. van Zanten, L. A. Voesenek, A. J. Peeters posted to affymetrix microarray statistics by waszak on 2007-11-13 20:56:03 as along with 7 people lwaldron heliopais GeeSharpMinor jfr neveaire ghattem pure39
	Impact of RNA degradation on gene expression profiles: assessment of different methods to reliably determine RNA quality. [My Copy] J Biotechnol, Vol. 127, No. 4. (20 January 2007), pp. 549-559. by V. Copois, F. Bibeau, C. Bascoul-Mollevi, et al.N. Salvetat, P. Chalbos, C. Bareil, L. Candeil, C. Fraslon, E. Conseiller, V. Granci, P. Mazière, A. Kramar, M. Ychou, B. Pau, P. Martineau, F. Molina, M. Del Rio posted to affymetrix microarray qc by waszak on 2007-11-13 20:14:04 as along with 3 people jfr ghattem bertelsen
	An application for assessing quality of RNA hybridized to Affymetrix GeneChips. [My Copy] Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2699-2701. by K. J. Archer, T. Guennel posted to affymetrix microarray qc statistics by waszak on 2007-11-13 20:12:18 as along with 3 people bertelsen jfr ghattem
	Trends in the quality of data from 5168 oligonucleotide microarrays from a single facility. [My Copy] J Biomol Tech, Vol. 16, No. 2. (June 2005), pp. 143-153. by D. B. Finkelstein posted to affymetrix microarray qc statistics by waszak on 2007-11-13 20:09:49 as along with 1 person ghattem
	Evaluation of quality-control criteria for microarray gene expression analysis. [My Copy] Clin Chem, Vol. 50, No. 11. (November 2004), pp. 1994-2002. by C. I. Dumur, S. Nasim, A. M. Best, et al.K. J. Archer, A. C. Ladd, V. R. Mas, D. S. Wilkinson, C. T. Garrett, A. Ferreira-Gonzalez posted to affymetrix microarray qc by waszak on 2007-11-13 20:08:06 as along with 1 person ghattem
	Explaining differences in saturation levels for Affymetrix GeneChip(R) arrays. [My Copy] Nucleic Acids Res (12 June 2007) by Dmitriy Skvortsov, Diana Abdueva, Christina Curtis, Betty Schaub, Simon Tavaré posted to affymetrix microarray by waszak on 2007-11-13 20:05:20 as along with 6 people jfr gpalidwor sebastien_vigneau ghattem ptrobajo bertelsen
	Summaries of Affymetrix GeneChip probe level data [My Copy] Nucl. Acids Res., Vol. 31, No. 4. (15 February 2003), e15. by Rafael A. Irizarry, Benjamin M. Bolstad, Francois Collin, Leslie M. Cope, Bridget Hobbs, Terence P. Speed posted to affymetrix microarray rma statistics by waszak on 2007-11-13 20:03:20 as along with 17 people jperkins daforerog lwaldron shikin dswan huiminC pcahan1 RMGraze aviad_work vplagnol ghattem talponer heliopais wirawan rschulz bertelsen srp33
	Effects of filtering by Present call on analysis of microarray experiments. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by J. N. McClintick, H. J. Edenberg posted to affymetrix microarray statistics by waszak on 2007-11-13 19:52:51 as along with 4 people bertelsen heliopais ghattem yevishere

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affymetrix	32
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genome	10
snp	10
tiling	10
networks	9
statistics	9
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r	8
cnp	7
ann	6
normalization	6
review	6
yeast	6
fret	5
genetics	5
hapmap	5
hmm	5
lc	5
qc	5
bioconductor	4
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matlab	4
peak-detection	4
segmentation	4
sequencing	4
smfret	4
tf	4
alignment	3
bayesian	3
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clustering	3
exon	3
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sv	3
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ai	2
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splicing	2
tlr	2
transcriptome	2
wavelet	2
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associationstudy	1
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