waszak's microarray [60 articles] Export

Recent papers added to waszak's library classified by the tag microarray. You can also see everyone's microarray.

	Copy-number variations associated with neuropsychiatric conditions. [My Copy] Nature, Vol. 455, No. 7215. (16 October 2008), pp. 919-923. by Edwin H. Cook, Stephen W. Scherer posted to autism cnv microarray neuropsychiatric review schizophrenia by waszak on 2008-10-17 14:05:37 as along with 3 people daforerog psique jdbowes
	Regulation of rtt107 recruitment to stalled DNA replication forks by the cullin rtt101 and the rtt109 acetyltransferase. [My Copy] Molecular biology of the cell, Vol. 19, No. 1. (January 2008), pp. 171-180. by T. M. Roberts, I. W. Zaidi, J. A. Vaisica, M. Peter, G. W. Brown posted to affymetrix microarray tiling yeast by waszak on 2008-10-08 17:43:34 as
	A high-resolution atlas of nucleosome occupancy in yeast [My Copy] Nat Genet, Vol. 39, No. 10. (16 October 2007), pp. 1235-1244. by William Lee, Desiree Tillo, Nicolas Bray, et al.Randall H. Morse, Ronald W. Davis, Timothy R. Hughes, Corey Nislow posted to microarray tiling yeast by waszak on 2008-10-08 17:42:46 as along with 5 people idonaldson hagechouchin443 aalibes epigenetics siebert
	A high-resolution map of transcription in the yeast genome [My Copy] PNAS, Vol. 103, No. 14. (4 April 2006), pp. 5320-5325. by Lior David, Wolfgang Huber, Marina Granovskaia, et al.Joern Toedling, Curtis J. Palm, Lee Bofkin, Ted Jones, Ronald W. Davis, Lars M. Steinmetz posted to microarray tiling transcriptome yeast by waszak on 2008-10-08 15:17:48 as along with 15 people and 2 groups oannes74 bartjacobse ThomasDOtto coela rdowell tuck alexg eckart_bindewald dpollard entropy raiyar xingxu chasmand guhjy GeeSharpMinor EisenLab steinmetzlab
	Transcript mapping with high-density oligonucleotide tiling arrays. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 16. (15 August 2006), pp. 1963-1970. by Wolfgang Huber, Joern Toedling, Lars M. Steinmetz posted to algorithm microarray normalization r software tiling by waszak on 2008-10-08 15:07:35 as along with 9 people bartjacobse inesdesantiago coela raiyar johncumbers jtaylor ptrobajo tresch GeeSharpMinor
	Transcript normalization and segmentation of tiling array data. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 527-538. by G. Zeller, S. R. Henz, S. Laubinger, D. Weigel, G. Rätsch posted to algorithm microarray normalization segmentation tiling by waszak on 2008-10-08 15:06:18 as along with 1 person GeeSharpMinor
	High-resolution mapping of DNA copy alterations in human chromosome 22 using high-density tiling oligonucleotide arrays. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 12. (21 March 2006), pp. 4534-4539. by A. E. Urban, J. O. Korbel, R. Selzer, et al.T. Richmond, A. Hacker, G. V. Popescu, J. F. Cubells, R. Green, B. S. Emanuel, M. B. Gerstein, S. M. Weissman, M. Snyder posted to cgh cnp human microarray tiling by waszak on 2008-10-08 15:04:44 as along with 1 person and 1 group rdiaz Bioinformatics
	High-resolution mapping of meiotic crossovers and non-crossovers in yeast. [My Copy] Nature, Vol. 454, No. 7203. (24 July 2008), pp. 479-485. by Eugenio Mancera, Richard Bourgon, Alessandro Brozzi, Wolfgang Huber, Lars M. Steinmetz posted to linkage microarray recombination scerevisiae tiling yeast by waszak on 2008-10-08 15:03:21 as along with 9 people semrich abrozzi Hans45 raiyar caseybrown djkt bpcusack jasontsai madhadron
	QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data. [My Copy] Nucleic Acids Res (27 March 2007) by Stefano Colella, Christopher Yau, Jennifer M M. Taylor, et al.Ghazala Mirza, Helen Butler, Penny Clouston, Anne S S. Bassett, Anneke Seller, Christopher C C. Holmes, Jiannis Ragoussis posted to algorithm bayes cnv genotyping hmm microarray snp by waszak on 2008-10-08 14:42:05 as along with 6 people and 2 groups rdiaz qfwills druvus psique caldavis jfr parkinson's disease references Bioinformatics
	Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays. [My Copy] Genome research, Vol. 16, No. 12. (1 December 2006), pp. 1575-1584. by Daisuke Komura, Fan Shen, Shumpei Ishikawa, et al.Karen R. Fitch, Wenwei Chen, Jane Zhang, Guoying Liu, Sigeo Ihara, Hiroshi Nakamura, Matthew E. Hurles, Charles Lee, Stephen W. Scherer, Keith W. Jones, Michael H. Shapero, Jing Huang, Hiroyuki Aburatani posted to affymetrix algorithm cnv genome human microarray snp by waszak on 2008-10-08 14:40:40 as along with 10 people and 4 groups shikin rdiaz jfr dchughes giovanni jeremymiller frohike vpschulz shigepong debasis Bioinformatics G4ID GeschwindLab Genetics-of-Gambling
	Reduction of endogenous angiogenesis inhibitors in Bruch's membrane of the submacular region in eyes with age-related macular degeneration. [My Copy] Archives of ophthalmology, Vol. 126, No. 5. (May 2008), pp. 670-678. by I. A. Bhutto, K. Uno, C. Merges, L. Zhang, D. S. McLeod, G. A. Lutty posted to cnv microarray by waszak on 2008-10-08 13:30:49 as
	Implications of bevacizumab on VEGF and endostatin in human choroidal neovascularization. [My Copy] The British journal of ophthalmology (6 October 2008) by Olcay Tatar, Kei Shinoda, Edwin Kaiserling, et al.Carl Claes, Claus Eckardt, Tillmann Eckert, Vicky Boeyden, Grazia Pertile, Efdal Yoeruek, Peter Szurman, Karl U U. Bartz-Schmidt, Salvatore Grisanti posted to cnv microarray by waszak on 2008-10-08 13:21:49 as
	Effect of polymorphisms within probe-target sequences on olignonucleotide microarray experiments [My Copy] Nucl. Acids Res., Vol. 36, No. 13. (1 August 2008), pp. 4417-4423. by David Benovoy, Tony Kwan, Jacek Majewski posted to affymetrix csh exon microarray snp by waszak on 2008-10-07 22:40:50 as along with 3 people jfr GeeSharpMinor caseybrown
	Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes [My Copy] Science, Vol. 315, No. 5813. (9 February 2007), pp. 848-853. by Barbara E. Stranger, Matthew S. Forrest, Mark Dunning, et al.Catherine E. Ingle, Claude Beazley, Natalie Thorne, Richard Redon, Christine P. Bird, Anna de Grassi, Charles Lee, Chris Tyler-Smith, Nigel Carter, Stephen W. Scherer, Simon Tavare, Panagiotis Deloukas, Matthew E. Hurles, Emmanouil T. Dermitzakis posted to cnv embl microarray tiling by waszak on 2008-10-07 21:05:05 as along with 32 people and 5 groups biovils lp2 daveGerrard sameersoi timhubbard Zephyrus ajbattle jonilaserson ilyashl emptyhb buyske zufar koller daed psique jo_davies srp33 guhjy jfr dpollard balicea rdiaz qfwills djkt vplagnol shigepong jlangdon xingxu cisevol caseybrown frohike jandot Roswell Cancer Crosstalk Visiting Position Bioinformatics EisenLab cis-regulatory-evolution
	Modeling of DNA microarray data by using physical properties of hybridization [My Copy] Proceedings of the National Academy of Sciences, Vol. 100, No. 13. (24 June 2003), pp. 7575-7580. by G. A. Held, G. Grinstein, Y. Tu posted to hybridization microarray by waszak on 2008-09-29 15:25:43 as along with 1 person talponer
	A probabilistic generative model for GO enrichment analysis [My Copy] Nucl. Acids Res. (1 August 2008), gkn434. by Yong Lu, Roni Rosenfeld, Itamar Simon, Gerard J. Nau, Ziv Bar-Joseph posted to algorithm go microarray software by waszak on 2008-09-28 20:06:37 as along with 10 people jfr guhjy inesdesantiago yaredo rdiaz paszkows barriot tmmurali raiyar jandot
	Identification of immune genes and proteins involved in the response of bovine mammary tissue to Staphylococcus aureus infection [My Copy] BMC Veterinary Research, Vol. 4 (02 June 2008), 18. by Ylva, Laurelea Donaldson, Christian P. Gray, et al.Tony Vuocolo, Roger Pearson, Antonio Reverter, Keren A. Byrne, Paul Sheehy, Ross Windon, Ross L. Tellam posted to bovine infection microarray saureus by waszak on 2008-08-27 01:30:02 as
	SOAP: short oligonucleotide alignment program [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 713-714. by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang posted to alignment microarray by waszak on 2008-08-18 14:35:44 as along with 26 people cthachuk hzoltan antonkratz adijr jmanning2k pachorip jmcq jsatkosk jasontsai n00c hpaces skembel maren natstreet druvus orzenil pengchy umit guhjy ghattem GustavoLacerda niallhaslam mdimon caseybrown urgi bozdagd
	xMAN: extreme MApping of OligoNucleotides [My Copy] BMC Genomics, Vol. 9, No. Suppl 1. (2008) by Wei Li, Jason Carroll, Myles Brown, Shirley X. Liu posted to algorithm microarray python by waszak on 2008-08-16 18:50:45 as along with 4 people guhjy natstreet druvus umit
	Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data [My Copy] Nucl. Acids Res., Vol. 33, No. 20. (10 November 2005), pp. e175-e175. by Manhong Dai, Pinglang Wang, Andrew D. Boyd, et al.Georgi Kostov, Brian Athey, Edward G. Jones, William E. Bunney, Richard M. Myers, Terry P. Speed, Huda Akil, Stanley J. Watson, Fan Meng posted to affymetrix genechip microarray by waszak on 2008-08-16 01:09:07 as along with 11 people and 2 groups rmk lwaldron giovenko pcahan1 frohike incovoma nicholso heliopais Montrachet shikin bertelsen Bioinformatics GeneGo
	SeqMap: mapping massive amount of oligonucleotides to the genome [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2395-2396. by Hui Jiang, Wing H. Wong posted to alignment microarray by waszak on 2008-08-15 15:31:51 as along with 11 people n00c cassj yupu natstreet druvus caseybrown guhjy nuin Zigster pengchy cthachuk
	An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays [My Copy] Bioinformatics, Vol. 24, No. 10. (15 May 2008), pp. 1278-1285. by Naoaki Ono, Shingo Suzuki, Chikara Furusawa, et al.Tomoharu Agata, Akiko Kashiwagi, Hiroshi Shimizu, Tetsuya Yomo posted to algorithm microarray normalization r by waszak on 2008-05-17 18:08:10 as along with 2 people heliopais giovenko
	Design Logic of a Cannabinoid Receptor Signaling Network That Triggers Neurite Outgrowth [My Copy] Science, Vol. 320, No. 5878. (16 May 2008), pp. 903-909. by Kenneth D. Bromberg, Avi Ma'ayan, Susana R. Neves, Ravi Iyengar posted to microarray networks tf by waszak on 2008-05-17 11:24:08 as along with 3 people AlexanderPico caseybrown oelemento
	Clinicopathologic Correlation of Up-regulated Genes Identified Using cDNA Microarray and Real-time Reverse Transcription-PCR in Human Colorectal Cancer [My Copy] Cancer Epidemiol Biomarkers Prev, Vol. 14, No. 2. (1 February 2005), pp. 437-443. by Sou-Tyau Chiu, Fon-Jou Hsieh, Shi-Wen Chen, Chun-Lieh Chen, Hwei-Fan Shu, Hung Li posted to cancer correlation microarray by waszak on 2008-02-19 22:22:05 as
	Microarrays in breast cancer research and clinical practice--the future lies ahead. [My Copy] Endocr Relat Cancer, Vol. 13, No. 4. (December 2006), pp. 1017-1031. by S. K. Gruvberger-Saal, H. E. Cunliffe, K. M. Carr, I. A. Hedenfalk posted to cancer clinical microarray review by waszak on 2008-02-19 22:20:20 as along with 2 people jfr fishtank
	Gene expression profiling of colon cancer by DNA microarrays and correlation with histoclinical parameters. [My Copy] Oncogene, Vol. 23, No. 7. (19 February 2004), pp. 1377-1391. by F. Bertucci, S. Salas, S. Eysteries, et al.V. Nasser, P. Finetti, C. Ginestier, E. Charafe-Jauffret, B. Loriod, L. Bachelart, J. Montfort, G. Victorero, F. Viret, V. Ollendorff, V. Fert, M. Giovaninni, J. R. Delpero, C. Nguyen, P. Viens, G. Monges, D. Birnbaum, R. Houlgatte posted to cancer correlation microarray by waszak on 2008-02-19 21:45:46 as
	Identification of SP5 as a downstream gene of the beta-catenin/Tcf pathway and its enhanced expression in human colon cancer. [My Copy] Int J Oncol, Vol. 27, No. 6. (December 2005), pp. 1483-1487. by M. Takahashi, Y. Nakamura, K. Obama, Y. Furukawa posted to beta-catenin cancer colon microarray pathway tcf by waszak on 2008-02-06 11:56:47 as
	Getting started in tiling microarray analysis. [My Copy] PLoS Comput Biol, Vol. 3, No. 10. (26 October 2007), pp. 1842-1844. by X. S. Liu posted to microarray review tiling by waszak on 2008-02-01 15:24:51 as along with 9 people ashishanand inesdesantiago emptyhb cassj jfr cabbagezs yevishere Ayest GeeSharpMinor
	Signature Evaluation Tool (SET): a Java-based tool to evaluate and visualize the sample discrimination abilities of gene expression signatures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Chih H. Jen, Tsun P. Yang, Chien Y. Tung, et al.Shu H. Su, Chi H. Lin, Ming T. Hsu, Hsei W. Wang posted to discrimination microarray signature software by waszak on 2008-02-01 09:54:09 as along with 4 people and 2 groups Zephyrus jfr frohike guhjy Roswell Cancer Crosstalk Breast Cancer Reading Club
	Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA [My Copy] BMC Biotechnology, Vol. 7 (13 September 2007), 57. by Karol L. Thompson, Scott P. Pine, Barry A. Rosenzweig, Yaron Turpaz, Jacques Retief posted to affymetrix microarray quality rna by waszak on 2008-01-30 14:02:28 as along with 2 people jfr caseybrown
	Visualization methods for statistical analysis of microarray clusters. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by M. A. Hibbs, N. C. Dirksen, K. Li, O. G. Troyanskaya posted to clustering microarray software by waszak on 2007-12-25 15:58:25 as along with 5 people guhjy jfr maryee smbaxtersf ndiaz
	MDQC: a new quality assessment method for microarrays based on quality control reports. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 23. (1 December 2007), pp. 3162-3169. by Gabriela V. Cohen Freue, Zsuzsanna Hollander, Enqing Shen, et al.Ruben H. Zamar, Robert Balshaw, Andreas Scherer, Bruce McManus, Paul Keown, W. Robert McMaster, Raymond T. Ng posted to microarray quality r software by waszak on 2007-12-10 14:29:13 as along with 4 people shikin zufar guhjy aviad_work
	GSEA-P: A desktop application for Gene Set Enrichment Analysis [My Copy] Bioinformatics (20 July 2007), btm369. by Aravind Subramanian, Heidi Kuehn, Joshua Gould, Pablo Tamayo, Jill P. Mesirov posted to gsea microarray networks software by waszak on 2007-12-09 17:08:13 as along with 9 people and 1 group idonaldson guhjy cassj ealloza schuylrp barriot dmontaner Eugene heliopais BioinfoCIPF
	Extracting Three-way Gene Interactions from Microarray Data. [My Copy] Bioinformatics (5 October 2007) by Jiexin Zhang, Yuan Ji, Li Zhang posted to microarray networks by waszak on 2007-11-16 09:41:28 as along with 3 people tmmurali jfr shigepong
	Construction, visualisation, and clustering of transcription networks from microarray expression data. [My Copy] PLoS computational biology, Vol. 3, No. 10. (1 October 2007), pp. 2032-2042. by Tom C. Freeman, Leon Goldovsky, Markus Brosch, et al.Stijn van Dongen, Pierre Mazière, Russell J. Grocock, Shiri Freilich, Janet Thornton, Anton J. Enright posted to clustering microarray networks by waszak on 2007-11-16 09:38:12 as along with 9 people ptrobajo jwhitney nolodie guhjy jfr sebastien_vigneau giovanni shigepong heliopais
	Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes. [My Copy] BMC systems biology, Vol. 1 (2007) by Pierre R. Bushel, Russell D. Wolfinger, Greg Gibson posted to affymetrix microarray software by waszak on 2007-11-14 11:00:55 as along with 1 person jfr
	Mining microarray data at NCBI's Gene Expression Omnibus (GEO). [My Copy] Methods Mol Biol*, Vol. 338 (2006), pp. 175-190. by T. Barrett, R. Edgar posted to database microarray by waszak on 2007-11-13 22:09:40 as along with 6 people giovenko guhjy frohike hpiwowar ablejec zhouyu
	A search engine to identify pathway genes from expression data on multiple organisms [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007) by Chunnuan Chen, Matthew Weirauch, Corey Powell, Alexander Zambon, Joshua Stuart posted to microarray pathway software by waszak on 2007-11-13 21:56:28 as along with 7 people and 1 group thegoose2 tharris guhjy tmmurali jfr rsandie AlexanderPico C. elegans / WormBase
	BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network. [My Copy] Bioinformatics (27 September 2006) by Xiaohui Chen, Ming Chen, Kaida Ning posted to microarray networks r software by waszak on 2007-11-13 21:54:53 as along with 6 people guhjy wnpx frohike jhatrimatri shigepong ramakris
	The Gaggle: an open-source software system for integrating bioinformatics software and data sources. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by P. T. Shannon, D. J. Reiss, R. Bonneau, N. S. Baliga posted to bioinformatics microarray software by waszak on 2007-11-13 21:49:45 as along with 13 people and 3 groups Zephyrus Thaverkamp druvus seemu daforerog guhjy julius dullhunk frohike jmuhlich cerami pablomendes megraw Bioinformatics SysbioMPI-TCells SorgerLab
	RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis. [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2825-2827. by F. Hong, R. Breitling, C. W. McEntee, B. S. Wittner, J. L. Nemhauser, J. Chory posted to affymetrix bioconductor microarray software by waszak on 2007-11-13 21:43:39 as along with 2 people jfr sanchezbuelna
	Array2BIO: from microarray expression data to functional annotation of co-regulated genes [My Copy] BMC Bioinformatics, Vol. 7 (16 June 2006), 307. by Gabriela G. Loots, Patrick S. G. Chain, Shalini Mabery, Amy Rasley, Emilio Garcia, Ivan Ovcharenko posted to management microarray software by waszak on 2007-11-13 21:42:06 as along with 2 people bsamal jfr
	CoXpress: differential co-expression in gene expression data. [My Copy] BMC bioinformatics, Vol. 7 (20 November 2006), 509. by Michael Watson posted to affymetrix co-expression microarray networks software statistics by waszak on 2007-11-13 21:28:58 as along with 5 people ptrobajo jfr dquest shigepong dps
	SIGMA: A System for Integrative Genomic Microarray Analysis of Cancer Genomes [My Copy] BMC Genomics, Vol. 7 (27 December 2006), 324. by Raj Chari, William W. Lockwood, Bradley P. Coe, et al.Anna Chu, Devon Macey, Andrew Thomson, Jonathan J. Davies, Calum Macaulay, Wan L. Lam posted to cgh microarray software by waszak on 2007-11-13 21:23:48 as along with 2 people jfr blackm0k
	GGtools: analysis of genetics of gene expression in bioconductor. [My Copy] Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 522-523. by V. J. Carey, M. Morgan, S. Falcon, R. Lazarus, R. Gentleman posted to affymetrix bioconductor microarray software by waszak on 2007-11-13 21:12:54 as along with 3 people guhjy jfr sanchezbuelna
	Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 19. (1 October 2007), pp. 2631-2632. by Duccio Cavalieri, Cinzia Castagnini, Simona Toti, et al.Karolina Maciag, Thomas Kelder, Luca Gambineri, Samuele Angioli, Piero Dolara posted to microarray pathway software by waszak on 2007-11-13 21:06:24 as along with 7 people ptrobajo guhjy tmmurali jfr aviad_work AlexanderPico thomaskelder
	Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation. [My Copy] Bioinformatics (19 February 2007) by Aaron Barsky, Jennifer L L. Gardy, Robert E W E. Hancock, Tamara Munzner posted to microarray networks software by waszak on 2007-11-13 21:04:33 as along with 2 people guhjy ghattem
	Improving comparability between microarray probe signals by thermodynamic intensity correction. [My Copy] Nucleic Acids Res (2 March 2007) by Georg M M. Bruun, Rasmus Wernersson, Agnieszka S S. Juncker, Hanni Willenbrock, Henrik Bjørn B. Nielsen posted to algorithm microarray by waszak on 2007-11-13 21:00:51 as along with 5 people guhjy ghattem GeeSharpMinor talponer niallhaslam
	Microarray Blob-Defect Removal Improves Array Analysis. [My Copy] Bioinformatics (1 March 2007) by Jun S S. Song, Kaveh Maghsoudi, Wei Li, Edward Fox, John Quackenbush, X Shirley Liu posted to affymetrix microarray software tiling by waszak on 2007-11-13 20:57:22 as along with 5 people and 1 group jfr kengg shigepong ghattem caseybrown Plantandetc
	How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by F. F. Millenaar, J. Okyere, S. T. May, M. van Zanten, L. A. Voesenek, A. J. Peeters posted to affymetrix microarray statistics by waszak on 2007-11-13 20:56:03 as along with 7 people lwaldron heliopais GeeSharpMinor jfr neveaire ghattem pure39

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microarray	60
affymetrix	32
cnv	27
software	24
algorithm	18
human	16
saureus	13
mastitis	11
genome	10
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tiling	10
networks	9
statistics	9
cancer	8
r	8
cnp	7
ann	6
normalization	6
review	6
yeast	6
fret	5
genetics	5
hapmap	5
hmm	5
lc	5
qc	5
bioconductor	4
bioimaging	4
ld	4
matlab	4
peak-detection	4
segmentation	4
sequencing	4
smfret	4
tf	4
alignment	3
bayesian	3
cgh	3
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exon	3
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hugene	3
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sv	3
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ai	2
bioinformatics	2
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correlation	2
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genechip	2
huex	2
infection	2
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mcmc	2
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waszak's microarray [60 articles] Export

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