wilsoros's library 53 articles Export

	The effect of intrinsic curvature on conformational properties of circular DNA [My Copy] Biophys. J., Vol. 72, No. 3. (1 March 1997), pp. 1070-1079. by V. Katritch, A. Vologodskii posted to no-tag by wilsoros on 2006-11-14 19:07:03 as
	Catabolite activator protein-induced DNA bending in transcription initiation. [My Copy] J Mol Biol, Vol. 219, No. 2. (20 May 1991), pp. 201-215. by S. S. Zinkel, D. M. Crothers posted to no-tag by wilsoros on 2006-11-08 21:56:00 as
	Determination of the DNA bend angle induced by the restriction endonuclease EcoRV in the presence of Mg2+. [My Copy] J Biol Chem, Vol. 268, No. 12. (25 April 1993), pp. 8645-8650. by T. Stöver, E. Köhler, U. Fagin, W. Wende, H. Wolfes, A. Pingoud posted to no-tag by wilsoros on 2006-11-08 21:52:43 as
	Thermodynamics "beyond" local equilibrium. [My Copy] Proc Natl Acad Sci U S A, Vol. 98, No. 20. (25 September 2001), pp. 11081-11084. by J. M. Vilar, J. M. Rubi posted to no-tag by wilsoros on 2006-11-08 21:46:31 as along with 1 person kentsis
	Modeling network dynamics: the lac operon, a case study. [My Copy] J Cell Biol, Vol. 161, No. 3. (12 May 2003), pp. 471-476. by J. M. Vilar, C. C. Guet, S. Leibler posted to no-tag by wilsoros on 2006-11-08 21:44:19 as along with 7 people and 2 groups rklancer jstajic jjray bayesian balicea johncumbers carmaus dIEMoSIRIS MoSi-Rostock
	DNA looping and physical constraints on transcription regulation. [My Copy] J Mol Biol, Vol. 331, No. 5. (29 August 2003), pp. 981-989. by J. M. Vilar, S. Leibler posted to no-tag by wilsoros on 2006-11-08 21:38:37 as along with 1 person jstajic
	DNA looping in gene regulation: from the assembly of macromolecular complexes to the control of transcriptional noise. [My Copy] Curr Opin Genet Dev, Vol. 15, No. 2. (April 2005), pp. 136-144. by J. M. Vilar, L. Saiz posted to no-tag by wilsoros on 2006-11-08 21:35:26 as
	DNA looping: the consequences and its control. [My Copy] Curr Opin Struct Biol, Vol. 16, No. 3. (June 2006), pp. 344-350. by L. Saiz, J. M. Vilar posted to no-tag by wilsoros on 2006-11-08 21:28:16 as
	Stochastic dynamics of macromolecular-assembly networks [My Copy] Molecular Systems Biology, Vol. 2 (16 May 2006) by Leonor Saiz, Jose M. G. Vilar posted to no-tag by wilsoros on 2006-11-08 21:26:10 as along with 2 people yyfwuhan phoenixzxl
	Multiprotein DNA looping. [My Copy] Phys Rev Lett, Vol. 96, No. 23. (16 June 2006) by J. M. Vilar, L. Saiz posted to no-tag by wilsoros on 2006-11-08 21:24:11 as
	High-throughput approach for detection of DNA bending and flexibility based on cyclization. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 6. (18 March 2003), pp. 3161-3166. by Y. Zhang, D. M. Crothers posted to no-tag by wilsoros on 2006-11-08 21:21:53 as
	Statistical mechanics of sequence-dependent circular DNA and its application for DNA cyclization. [My Copy] Biophys J, Vol. 84, No. 1. (January 2003), pp. 136-153. by Y. Zhang, D. M. Crothers posted to no-tag by wilsoros on 2006-11-08 21:20:50 as
	Nematic textures in spherical shells. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 74, No. 2 Pt 1. (August 2006) by V. Vitelli, D. R. Nelson posted to no-tag by wilsoros on 2006-11-08 20:51:51 as
	Pause point spectra in DNA constant-force unzipping. [My Copy] Biophys J, Vol. 88, No. 4. (April 2005), pp. 2752-2765. by J. D. Weeks, J. B. Lucks, Y. Kafri, C. Danilowicz, D. R. Nelson, M. Prentiss posted to no-tag by wilsoros on 2006-11-08 20:50:00 as
	Molecular mechanisms of cellular mechanics. [My Copy] Phys Chem Chem Phys, Vol. 8, No. 32. (28 August 2006), pp. 3692-3706. by M. Gao, M. Sotomayor, E. Villa, E. H. Lee, K. Schulten posted to no-tag by wilsoros on 2006-11-08 20:43:09 as along with 1 person choonpeng
	Scalable molecular dynamics with NAMD [My Copy] Journal of Computational Chemistry, Vol. 26, No. 16. (December 2005), pp. 1781-1802. by James C. Phillips, Rosemary Braun, Wei Wang, et al.James Gumbart, Emad Tajkhorshid, Elizabeth Villa, Christophe Chipot, Robert D. Skeel, Laxmikant Kalé, Klaus Schulten posted to no-tag by wilsoros on 2006-11-08 20:41:54 as along with 20 people and 5 groups krapnik pjkiley flbarroso yxue r2s2 grondina rpetrenko oteri oceanwind dfgreen vahmurk gisle dimka jwm ttjoseph sangeetha yoel_rf bilab sobolevnrm ibuch Radiation_Damage Stressosome Bioinformatics insilicodrug baker-group
	Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 19. (10 May 2005), pp. 6783-6788. by E. Villa, A. Balaeff, K. Schulten posted to no-tag by wilsoros on 2006-11-08 20:41:10 as
	Methods for analyzing DNA bending. [My Copy] Methods Mol Biol, Vol. 94 (1999), pp. 109-123. by J. D. Kahn posted to no-tag by wilsoros on 2006-11-08 20:37:18 as
	Bacterial repression loops require enhanced DNA flexibility. [My Copy] J Mol Biol, Vol. 349, No. 4. (17 June 2005), pp. 716-730. by N. A. Becker, J. D. Kahn, L. J. Maher posted to no-tag by wilsoros on 2006-11-08 20:36:02 as
	Position-dependent effects of locked nucleic acid (LNA) on DNA sequencing and PCR primers. [My Copy] Nucleic Acids Res (2 November 2006) by Joshua D D. Levin, Dean Fiala, Meinrado F F. Samala, Jason D D. Kahn, Raymond J J. Peterson posted to no-tag by wilsoros on 2006-11-08 20:29:00 as
	Three-dimensional vibration analysis of a torus with circular cross section [My Copy] The Journal of the Acoustical Society of America, Vol. 112, No. 6. (2002), pp. 2831-2839. by D. Zhou, F. T. K. Au, S. H. Lo, Y. K. Cheung posted to no-tag by wilsoros on 2006-10-30 21:39:36 as
	Exact Solutions for Out-of-Plane Vibration of Curved Nonuniform Beams [My Copy] Journal of Applied Mechanics, Vol. 68, No. 2. (2001), pp. 186-191. by S. Y. Lee, J. C. Chao posted to beams by wilsoros on 2006-10-30 21:24:17 as
	Tension-dependent DNA cleavage by restriction endonucleases: Two-site enzymes are "switched off" at low force [My Copy] PNAS, Vol. 103, No. 31. (1 August 2006), pp. 11555-11560. by Gregory J. Gemmen, Rachel Millin, Douglas E. Smith posted to dna tension by wilsoros on 2006-10-26 22:57:27 as
	Calculation of the persistence length of a flexible polymer chain with short-range self-repulsion [My Copy] The European Physical Journal E - Soft Matter, Vol. V13, No. 3. (1 March 2004), pp. 225-237. by L. Schã¤fer, K. Elsner posted to length persistence range repulsion self short by wilsoros on 2006-10-19 00:58:49 as
	Variational theory for a single polyelectrolyte chain revisited [My Copy] The European Physical Journal E - Soft Matter, Vol. V14, No. 1. (1 May 2004), pp. 67-77. by M. Manghi, R. R. Netz posted to electrostatics length persistence by wilsoros on 2006-10-19 00:58:20 as
	Helical phasing between DNA bends and the determination of bend direction. [My Copy] Nucleic Acids Res, Vol. 15, No. 23. (10 December 1987), pp. 9771-9779. by J. J. Salvo, N. D. Grindley posted to no-tag by wilsoros on 2006-10-19 00:28:10 as
	DNA bend direction by phase sensitive detection. [My Copy] Nature, Vol. 328, No. 6126. (5 1987), pp. 178-181. by S. S. Zinkel, D. M. Crothers posted to camp repression by wilsoros on 2006-10-19 00:25:57 as
	Calculation of the persistence length of a flexible polymer chain with short-range self-repulsion. [My Copy] Eur Phys J E Soft Matter, Vol. 13, No. 3. (March 2004), pp. 225-237. by L. Schäfer, K. Elsner posted to length persistence by wilsoros on 2006-10-18 06:40:44 as
	Comparative gel electrophoresis measurement of the DNA bend angle induced by the catabolite activator protein. [My Copy] Biopolymers, Vol. 29, No. 1. (January 1990), pp. 29-38. by S. S. Zinkel, D. M. Crothers posted to atract camp repression by wilsoros on 2006-10-18 06:26:24 as
	Binding of the cyclic AMP receptor protein of Escherichia coli and DNA bending at the P4 promoter of pBR322. [My Copy] Biochem J, Vol. 285 ( Pt 1) (1 July 1992), pp. 91-97. by I. Brierley, J. G. Hoggett posted to camp repression by wilsoros on 2006-10-18 06:24:59 as
	Analysis of the spacer DNA between the cyclic AMP receptor protein binding site and the lac promoter. [My Copy] J Bacteriol, Vol. 178, No. 8. (April 1996), pp. 2436-2439. by U. Flatow, G. V. Rajendrakumar, S. Garges posted to camp repression by wilsoros on 2006-10-18 06:22:55 as
	Single-molecule spectroscopic determination of lac repressor-DNA loop conformation. [My Copy] Biophys J, Vol. 89, No. 4. (October 2005), pp. 2588-2596. by M. A. Morgan, K. Okamoto, J. D. Kahn, D. S. English posted to kahn by wilsoros on 2006-10-04 04:47:13 as
	Diffusion-Limited Aggregation, a Kinetic Critical Phenomenon [My Copy] Physical Review Letters, Vol. 47, No. 19. (Nov 1981), pp. 1400-1403. by T. A. Witten, L. M. Sander posted to cited len lots sander by wilsoros on 2006-09-18 22:15:45 as along with 2 people danilov maburkitt
	DNA flexibility studied by covalent closure of short fragments into circles. [My Copy] Proc Natl Acad Sci U S A, Vol. 78, No. 8. (August 1981), pp. 4833-4837. by D. Shore, J. Langowski, R. L. Baldwin posted to dna frags by wilsoros on 2006-09-18 19:30:11 as
	DNA-binding domains of Fos and Jun do not induce DNA curvature: an investigation with solution and gel methods. [My Copy] Proc Natl Acad Sci U S A, Vol. 95, No. 4. (17 February 1998), pp. 1404-1409. by A. Sitlani, D. M. Crothers posted to dna modeling by wilsoros on 2006-09-18 19:24:31 as
	Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps. [My Copy] Biophys J, Vol. 89, No. 6. (December 2005), pp. 3721-3740. by S. B. Dixit, D. L. Beveridge, D. A. Case, et al.T. E. Cheatham, E. Giudice, F. Lankas, R. Lavery, J. H. Maddocks, R. Osman, H. Sklenar, K. M. Thayer, P. Varnai posted to dna modeling molecular stiffness by wilsoros on 2006-09-18 19:21:30 as
	Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. I. Research Design and Results on d(CpG) Steps [My Copy] Biophysical Journal, Vol. 87, No. 6. (December 2004), pp. 3799-3813. by D. Beveridge posted to computational dna stiffness by wilsoros on 2006-09-18 19:17:06 as along with 1 person itolokh
	Structure of the rotor of the bacterial flagellar motor revealed by electron cryomicroscopy and single-particle image analysis. [My Copy] J Mol Biol, Vol. 337, No. 1. (12 March 2004), pp. 105-113. by H. Suzuki, K. Yonekura, K. Namba posted to no-tag by wilsoros on 2006-09-13 12:08:31 as along with 1 person gabe_rosser
	Driven polymer translocation through a narrow pore. [My Copy] Biophys J, Vol. 77, No. 4. (October 1999), pp. 1824-1838. by D. K. Lubensky, D. R. Nelson posted to no-tag by wilsoros on 2006-09-11 21:00:01 as along with 1 person softsimu
	Pulling pinned polymers and unzipping DNA. [My Copy] Phys Rev Lett, Vol. 85, No. 7. (14 August 2000), pp. 1572-1575. by D. K. Lubensky, D. R. Nelson posted to no-tag by wilsoros on 2006-09-11 20:59:00 as
	Single molecule statistics and the polynucleotide unzipping transition. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 65, No. 3 Pt 1. (March 2002) by D. K. Lubensky, D. R. Nelson posted to no-tag by wilsoros on 2006-09-11 20:57:36 as
	DNA unzipped under a constant force exhibits multiple metastable intermediates. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 4. (18 February 2003), pp. 1694-1699. by C. Danilowicz, V. W. Coljee, C. Bouzigues, D. K. Lubensky, D. R. Nelson, M. Prentiss posted to no-tag by wilsoros on 2006-09-11 20:56:24 as
	Unzipping kinetics of double-stranded DNA in a nanopore. [My Copy] Phys Rev Lett, Vol. 90, No. 23. (13 June 2003) by A. F. Sauer-Budge, J. A. Nyamwanda, D. K. Lubensky, D. Branton posted to no-tag by wilsoros on 2006-09-11 20:54:57 as
	Dynamics of molecular motors and polymer translocation with sequence heterogeneity. [My Copy] Biophys J, Vol. 86, No. 6. (June 2004), pp. 3373-3391. by Y. Kafri, D. K. Lubensky, D. R. Nelson posted to no-tag by wilsoros on 2006-09-11 20:51:47 as
	Dynamics of molecular motors with finite processivity on heterogeneous tracks. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 71, No. 4 Pt 1. (April 2005) by Y. Kafri, D. K. Lubensky, D. R. Nelson posted to no-tag by wilsoros on 2006-09-11 20:49:36 as
	Modeling DNA loops using the theory of elasticity. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 73, No. 3 Pt 1. (March 2006) by A. Balaeff, L. Mahadevan, K. Schulten posted to no-tag by wilsoros on 2006-09-07 18:26:59 as
	DNA-tension dependence of restriction enzyme activity reveals mechanochemical properties of the reaction pathway. [My Copy] Nucleic Acids Res, Vol. 33, No. 8. (2005), pp. 2676-2684. by B. van den Broek, M. C. Noom, G. J. Wuite posted to particles tethered by wilsoros on 2006-09-06 22:20:25 as
	Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI [My Copy] Nucleic Acids Research, Vol. 34, No. 1. (2006), pp. 167-174. by Bram Broek, Francesco Vanzi, Davide Normanno, Francesco S. Pavone, Gijs J. Wuite posted to particles tethered by wilsoros on 2006-09-06 22:17:12 as along with 1 person madhadron
	Analysis of scanning force microscopy images of protein-induced DNA bending using simulations. [My Copy] Nucleic Acids Res, Vol. 33, No. 7. (2005) by R. T. Dame, J. van Mameren, M. S. Luijsterburg, et al.M. E. Mysiak, A. Janićijević, G. Pazdzior, P. C. van der Vliet, C. Wyman, G. J. Wuite posted to no-tag by wilsoros on 2006-09-06 20:46:39 as
	Dissecting elastic heterogeneity along DNA molecules coated partly with Rad51 using concurrent fluorescence microscopy and optical tweezers. [My Copy] Biophys J (18 August 2006) by Joost van Mameren, Mauro Modesti, Roland Kanaar, Claire Wyman, Gijs J L J. Wuite, Erwin J G J. Peterman posted to particles tethered by wilsoros on 2006-09-06 20:40:19 as

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wilsoros's library 53 articles Export

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