winterschlaefer's watchlist [more than 800 articles] Export Sort

Recent papers matching winterschlaefer's watchlist criteria

Hide details

	Genome-wide maps of mono- and di-nucleosomes of Aspergillus fumigatus [My Copy] Bioinformatics, Vol. 25, No. 18., pp. 2295-2297. by Hiromi Nishida, Takayuki Motoyama, Shogo Yamamoto, Hiroyuki Aburatani, Hiroyuki Osada
	Evidence for human microRNA-offset RNAs in small RNA sequencing data [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2298-2301. by David Langenberger, Clara Bermudez-Santana, Jana Hertel, Steve Hoffmann, Philipp Khaitovich, Peter F. Stadler posted by 10 people hzoltan microRNA microRNA heliopais dswan natstreet fishtank n00c kutter01 samgj
	k-link EST clustering: evaluating error introduced by chimeric sequences under different degrees of linkage. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 18. (15 September 2009), pp. 2302-2308. by Lauren M. Bragg, Glenn Stone posted by 1 person orzenil
	Using a mutual information-based site transition network to map the genetic evolution of influenza A/H3N2 virus. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 18. (15 September 2009), pp. 2309-2317. by Zhen Xia, Gulei Jin, Jun Zhu, Ruhong Zhou posted by 4 people marywaye zwang phoenixzxl druvus
	Motif discovery and motif finding from genome-mapped DNase footprint data [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2318-2325. by Ivan V. Kulakovskiy, Alexander V. Favorov, Vsevolod J. Makeev posted by 5 people bsamal operon nuin maximilianh cisevol
	Prediction of protein -residue contacts by Markov logic networks with grounding-specific weights [My Copy] Bioinformatics, Vol. 25, No. 18., pp. 2326-2333. by Marco Lippi, Paolo Frasconi
	Comparative study on ChIP-seq data: normalization and binding pattern characterization [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2334-2340. by Cenny Taslim, Jiejun Wu, Pearlly Yan, et al.Greg Singer, Jeffrey Parvin, Tim Huang, Shili Lin, Kun Huang posted by 11 people Bioinformatics - CRUK Stew tonamswish stubrown inesdesantiago ewilban1 guhjy Chinnaiyan Lab mkiyer humburg rschulz
	Transcriptional landscape estimation from tiling array data using a model of signal shift and drift. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 18. (15 September 2009), pp. 2341-2347. by Pierre Nicolas, Aurélie Leduc, Stéphane Robin, Simon Rasmussen, Hanne Jarmer, Philippe Bessières posted by 3 people rolandkrause rdiaz humburg
	Unite and conquer: univariate and multivariate approaches for finding differentially expressed gene sets [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2348-2354. by Galina V. Glazko, Frank Emmert-Streib posted by 9 people shikin zufar rdiaz brianb m509396 dswan natstreet guhjy neils
	Robustness considerations in selecting efficient two-color microarray designs [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2355-2361. by A. H. Mahbub M. Latif, Frank Bretz, Edgar Brunner posted by 1 person rdiaz
	Determining noisy attractors of delayed stochastic gene regulatory networks from multiple data sources [My Copy] Bioinformatics, Vol. 25, No. 18., pp. 2362-2368. by Xiaofeng Dai, Olli Yli-Harja, Andre S. Ribeiro
	TileProbe: modeling tiling array probe effects using publicly available data [My Copy] Bioinformatics (9 July 2009), btp425. by Jennifer T. Judy, Hongkai Ji posted by 1 person humburg
	Identification of distant family relationships [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2376-2382. by Oivind Skare, Nuala Sheehan, Thore Egeland posted by 2 people jsatkosk pkonings
	DYNAMIK: a software environment for cell DYNAmics, Motility, and Information tracKing, with an application to Ras pathways. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 18. (15 September 2009), pp. 2383-2388. by Stefan Jaeger, Qingfeng Song, Su-Shing S. Chen posted by 2 people dglane001 guhjy
	Cross-scale, cross-pathway evaluation using an agent-based non-small cell lung cancer model [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2389-2396. by Zhihui Wang, Christina M. Birch, Jonathan Sagotsky, Thomas S. Deisboeck posted by 1 person m509396
	Supervised prediction of drug-target interactions using bipartite local models [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2397-2403. by Kevin Bleakley, Yoshihiro Yamanishi posted by 5 people mingzhi ptrobajo apocapoc zwang phoenixzxl
	The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2404-2410. by Curtis Huttenhower, Matthew A. Hibbs, Chad L. Myers, Amy A. Caudy, David C. Hess, Olga G. Troyanskaya posted by 4 people wilbur tmmurali TRHvidsten phoenixzxl
	High throughput minor histocompatibility antigen prediction. [My Copy] Bioinformatics (Oxford, England) (1 July 2009) by David S. Deluca, Britta Eiz-Vesper, Nektarios Ladas, Barbara Anna-Maria A. Khattab, Rainer Blasczyk posted by 1 person hifzur
	ADAN: a database for prediction of protein-protein interaction of modular domains mediated by linear motifs [My Copy] Bioinformatics (14 July 2009), btp424. by J. A. Encinar, G. Fernandez-Ballester, I. E. Sanchez, et al.E. Hurtado-Gomez, F. Stricher, P. Beltrao, L. Serrano posted by 2 people robfsouza neils
	WebArrayDB: cross-platform microarray data analysis and public data repository [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2425-2429. by Xiao-Qin Xia, Michael McClelland, Steffen Porwollik, Wenzhi Song, Xianling Cong, Yipeng Wang posted by 9 people ptrobajo lwaldron daforerog dswan natstreet guhjy brianb neils rschulz
	HAPLOWSER: a whole-genome haplotype browser for personal genome and metagenome [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2430-2431. by Jong H. Kim, Woo-Cheol Kim, Michael S. Waterman, Sanghyun Park, Lei M. Li posted by 5 people n00c dakelley natstreet djkt guhjy
	TTA Lynx: a web-based service for analysis of actinomycete genes containing rare TTA codon [My Copy] Bioinformatics, Vol. 25, No. 18., pp. 2432-2433. by Nestor Zaburannyy, Bohdan Ostash, Victor Fedorenko
	SNP-o-matic [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2434-2435. by Heinrich M. Manske, Dominic P. Kwiatkowski posted by 13 people hzoltan darian GeeSharpMinor daforerog ThomasDOtto natstreet misonneh druvus guhjy Zephyrus orzenil n00c Journal picks
	HI: haplotype improver using paired-end short reads [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2436-2437. by Quan Long, Daniel MacArthur, Zemin Ning, Chris Tyler-Smith posted by 9 people n00c jsatkosk Journal picks PabloMarin djkt pkonings natstreet guhjy jasontsai
	PIQA: pipeline for Illumina G1 genome analyzer data quality assessment [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2438-2439. by A. Martinez-Alcantara, E. Ballesteros, C. Feng, et al.M. Rojas, H. Koshinsky, V. Y. Fofanov, P. Havlak, Y. Fofanov posted by 3 people djkt guhjy n00c
	TreeTime: an extensible C++ software package for Bayesian phylogeny reconstruction with time-calibration. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 18. (15 September 2009), pp. 2440-2441. by Lin Himmelmann, Dirk Metzler posted by 4 people nuin nlapalu iSEEM djkt
	Affy exon tissues: exon levels in normal tissues in human, mouse and rat [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2442-2443. by Andrew A. Pohl, Charles W. Sugnet, Tyson A. Clark, Kayla Smith, Pauline A. Fujita, Melissa S. Cline posted by 2 people dswan guhjy
	Path: a tool to facilitate pathway-based genetic association analysis. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 18. (15 September 2009), pp. 2444-2446. by David Zamar, Ben Tripp, George Ellis, Denise Daley posted by 6 people zufar jamesmorris daforerog natstreet pkonings guhjy
	ITM Probe: analyzing information flow in protein networks [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2447-2449. by Aleksandar Stojmirovic, Yi-Kuo Yu posted by 2 people bsamal mitko
	ViTraM: visualization of transcriptional modules. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 18. (15 September 2009), pp. 2450-2451. by Hong Sun, Karen Lemmens, Tim Van den Bulcke, Kristof Engelen, Bart De Moor, Kathleen Marchal posted by 5 people idonaldson natstreet TRHvidsten guhjy frohike
	Antimony: a modular model definition language [My Copy] Bioinformatics, Vol. 25, No. 18., pp. 2452-2454. by Lucian P. Smith, Frank T. Bergmann, Deepak Chandran, Herbert M. Sauro
	A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2149-2156. by Henrik Bengtsson, Pratyaksha Wirapati, Terence P. Speed posted by 6 people shikin djkt pkonings rdiaz daforerog neils
	SHREC: a short-read error correction method [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2157-2163. by Jan Schroder, Heiko Schroder, Simon J. Puglisi, Ranjan Sinha, Bertil Schmidt posted by 16 people claire_jubin heliopais adthrasher dakelley skembel thegoose katholt sotacam djkt rtogawa torfinnnome Journal picks natstreet druvus n00c jmeppley
	A pipeline for the quantitative analysis of CG dinucleotide methylation using mass spectrometry. [My Copy] Bioinformatics (Oxford, England) (26 June 2009) by Reid F. Thompson, Masako Suzuki, Kevin W. Lau, John M. Greally posted by 2 people rschulz nuin
	Comments on sequence normalization of tiling array expression [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2171-2173. by Don Gilbert, Andreas Rechtsteiner posted by 5 people humburg djkt rdiaz Bioinformatics dswan
	Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2174-2180. by Xiaowen Liu, Yonghua Han, Denis Yuen, Bin Ma posted by 2 people brianb nuin
	Reliable prediction of protein thermostability change upon double mutation from amino acid sequence [My Copy] Bioinformatics, Vol. 25, No. 17., pp. 2181-2187. by Liang-Tsung Huang, Michael M. Gromiha
	GR-Aligner: an algorithm for aligning pairwise genomic sequences containing rearrangement events [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2188-2193. by Te-Chin Chu, Tsunglin Liu, D. T. Lee, Greg C. Lee, Arthur C. Shih posted by 4 people n00c torfinnnome nlapalu jmeppley
	Swift: primary data analysis for the Illumina Solexa sequencing platform [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2194-2199. by Nava Whiteford, Tom Skelly, Christina Curtis, et al.Matt E. Ritchie, Andrea Lohr, Alexander W. Zaranek, Irina Abnizova, Clive Brown posted by 28 people darian humburg n00c heliopais hzoltan dakelley sotacam lh49 djkt rtogawa cassj Bioinformatics dswan torfinnnome rschulz BergmanLab natstreet druvus jasontsai jmeppley SIMR bioinformatics ghattem nuin polivares aprasad Journal picks niallhaslam idoerg
	SOLpro: accurate sequence-based prediction of protein solubility [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2200-2207. by Christophe N. Magnan, Arlo Randall, Pierre Baldi posted by 1 person nlapalu
	Inferring progression models for CGH data [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2208-2215. by Jun Liu, Nirmalya Bandyopadhyay, Sanjay Ranka, M. Baudis, Tamer Kahveci posted by 6 people davfre sameersoi pkonings rdiaz nuin bgordski
	Error control variability in pathway-based microarray analysis [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2216-2221. by David L. Gold, Jeffrey C. Miecznikowski, Song Liu posted by 5 people mkbehnke shikin VGreiff rdiaz guhjy
	Prestige centrality-based functional outlier detection in gene expression analysis [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2222-2228. by Ali Torkamani, Nicholas J. Schork posted by 4 people natstreet rdiaz TRHvidsten guhjy
	Reconstructing signaling pathways from RNAi data using probabilistic Boolean threshold networks. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2229-2235. by Lars Kaderali, Eva Dazert, Ulf Zeuge, Michael Frese, Ralf Bartenschlager posted by 2 people ptrobajo fastjoe23
	Reconstruct modular phenotype-specific gene networks by knowledge-driven matrix factorization. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2236-2243. by Xuerui Yang, Yang Zhou, Rong Jin, Christina Chan posted by 4 people enelkinsan ekotelnikova ptrobajo guhjy
	A CitationRank algorithm inheriting Google technology designed to highlight genes responsible for serious adverse drug reaction. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2244-2250. by Lun Yang, Langlai Xu, Lin He posted by 5 people ashishanand reyez nlapalu ylem guhjy
	A survey of across-target bioactivity results of small molecules in PubChem [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2251-2255. by Lianyi Han, Yanli Wang, Stephen H. Bryant posted by 3 people reyez nickolay Journal picks
	A genetic programming approach for Burkholderia Pseudomallei diagnostic pattern discovery [My Copy] Bioinformatics, Vol. 25, No. 17., pp. 2256-2262. by Zheng Rong R. Yang, Ganjana Lertmemongkolchai, Gladys Tan, Philip L. Felgner, Richard Titball
	Biophysical annotation and representation of CellML models [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2263-2270. by S. M. Wimalaratne, M. D. B. Halstead, C. M. Lloyd, E. J. Crampin, P. F. Nielsen posted by 3 people dagmar guhjy allysonlister
	IMG ER: a system for microbial genome annotation expert review and curation [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2271-2278. by Victor M. Markowitz, Konstantinos Mavromatis, Natalia N. Ivanova, I-Min A. Chen, Ken Chu, Nikos C. Kyrpides posted by 5 people kiekyon Thaverkamp neils natstreet druvus

Note: You may cite this page as: http://www.citeulike.org/user/winterschlaefer/watchlist

Result page: 1 2 3 4 5 6 7 8 9 10 Next

Sort by:
Order:	Default Ascending Descending
Empty fields:	Default First Last

microarray	39
cancer	28
ppi	23
statistics	14
prediction	13
predictor	12
structure	12
disease	11
classification	8
rna	7
survival	6
evolution	6
sequence	6
hubs	5
network	5
human	4
motif	4
methods	4
pancreas	3
review	3
interaction	3
orthology	3
gene	3
ddi	3
phylogeneticprofiling	3
complexes	3
tutorial	2
education	2
ismb08	2
bologna08	2
plsr	2
14-3-3	2
yeast	2
genome	2
gfp	2
method	2
expression	2
high-throughput	2
protein	2
go	1
r	1
threading	1
interologs	1
snp	1
regulation	1
staging	1
comparison	1
synthetic	1
breast	1
phenotype	1
sysbio	1
stemcell	1
gtpases	1
genes	1
model_organisms	1
folding	1
interface	1
benchmark	1
bindingsite	1
pcfbim07	1
splicing	1
pathway	1
stemcells	1
integration	1
drug	1
geneduplication	1
variation	1
outcome	1
pdac	1
noise	1
tnm	1
machine-learning	1
crohn	1
rt-pcr	1
cell	1
clustering	1
proteomics	1
noncoding	1
svm	1
genphen	1
medicine	1
signatures	1
data	1
caspase	1
personalized	1
minimal	1
lung	1
visualization	1
quality	1
conservation	1
error	1
cea	1
arabidopsis	1
mutation	1
flawed	1
insulin	1
population	1
ptb	1
surgery	1
modelling	1
coevolution	1
alignment	1
bioconductor	1
repeat	1
loops	1
validation	1
python	1
tumor-marker	1
function	1
genetics	1
microrna	1

winterschlaefer's watchlist [more than 800 articles] Export Sort

winterschlaefer's tags