wnpx's library 553 articles Export

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	Probabilistic modeling and machine learning in structural and systems biology. [My Copy] BMC Bioinformatics, Vol. 8 Suppl 2 (2007) by S. Kaski, J. Rousu, E. Ukkonen posted to dt machinelearning modeling new probabilistic sysbio toread by wnpx on 2007-06-28 09:47:27 as along with 1 person shigepong
	Systems Biology: A Brief Overview [My Copy] Science, Vol. 295, No. 5560. (1 March 2002), pp. 1662-1664. by Hiroaki Kitano posted to systemsbiology sysbio sec-background-sysbio review overview dt by wnpx on 2006-01-31 10:54:09 as along with 37 people and 7 groups pjmaybank kokphinchooi schmidtm abhishek_tiwari fgibson roys daforerog Scis0000002 agomez tlse65 fierykylin Adso dansullivanblk rsantana joseph_x_zhou reyez softsimu irenas Yanno Borelli biosv shivakumar3_14 dgront kehan cconboy mmt margaritis grahamc roland_ewald carmaus jdiezperezj maburkitt mertnuhoglu edvin lenov soramame_0518 nsamways smac dbk-lab biodiversity_conservation Bioinformatics GrassBase dIEMoSIRIS MoSi-Rostock
	From signatures to models: understanding cancer using microarrays [My Copy] Nature Genetics, Vol. 37 Suppl (01 June 2005), pp. S38-S45. by Eran Segal, Nir Friedman, Naftali Kaminski, Aviv Regev, Daphne Koller posted to cancer expressiondata modeling by wnpx on 2006-01-05 22:23:17 as along with 13 people and 1 group bertelsen chasmand roys lwaldron cswinburne aalibes textoris troels_marstrand nirfriedman rdiaz sampath shikin srp33 GeneGo
	Whole-istic Biology [My Copy] Science, Vol. 295, No. 5560. (1 March 2002), 1661. by Lisa Chong, Bryan L. Ray posted to background sysbio toread by wnpx on 2007-02-05 18:46:40 as along with 1 person margaritis
	Visual setup of logical models of signaling and regulatory networks with ProMoT [My Copy] BMC Bioinformatics, Vol. 7 (17 November 2006), 506. by Julio Saez-Rodriguez, Sebastian Mirschel, Rebecca Hemenway, Steffen Klamt, Ernst D. Gilles, Martin Ginkel posted to boolean modeling network now by wnpx on 2006-11-18 18:05:57 as along with 1 person dquest
	Being Bayesian About Network Structure. A Bayesian Approach to Structure Discovery in Bayesian Networks [My Copy] Machine Learning, Vol. V50, No. 1. (1 January 2003), pp. 95-125. by Nir Friedman, Daphne Koller posted to bayesian network structure by wnpx on 2006-11-17 06:16:03 as along with 5 people and 1 group garyfeng Borelli chechetka quianominorleo naegele ReadingLab
	Relational Dynamic Bayesian Networks [My Copy] Journal of Artificial Intelligence Research, Vol. 24 (2005), pp. 759-797. by Sumit Sanghai, Pedro Domingos, Daniel Weld posted to bayesian dbn relational by wnpx on 2006-07-28 13:03:13 as
	WinBUGS - A Bayesian modelling framework: Concepts, structure, and extensibility [My Copy] Statistics and Computing, Vol. 10, No. 4. (1 October 2000), pp. 325-337. by David J. Lunn, Andrew Thomas, Nicky Best, David Spiegelhalter posted to bayesian implementation inference by wnpx on 2006-07-28 12:48:44 as along with 3 people renreff famuvie raylim
	VIBES: A Variational Inference Engine for Bayesian Networks [My Copy] In NIPS 2002 (2002) by Christopher M. Bishop, David Spiegelhalter, John Winn posted to bayesian implementation inference variational variationalbayes by wnpx on 2006-07-28 12:46:46 as
	Reverse engineering of genetic networks with Bayesian networks. [My Copy] Biochem Soc Trans, Vol. 31, No. Pt 6. (December 2003), pp. 1516-1518. by D. Husmeier posted to bayesian gene network by wnpx on 2006-07-26 20:56:45 as
	Graphical models for discovering knowledge [My Copy] In Advances in Knowledge Discovery and Data Mining (1995), pp. 59-83. by Wray L. Buntine edited by U. M. Fayyad, Piatetsky G. Shapiro, P. Smyth, R. S. Uthurasamy posted to bayesian graphicalmodels by wnpx on 2006-07-13 18:17:00 as along with 1 person mad_genius
	Query DAGs: A Practical Paradigm for Implementing Belief-Network Inference [My Copy] Journal of Artificial Intelligence Research, Vol. 6 (1997), pp. 147-176. by Adnan Darwiche, Gregory M. Provan posted to bayesian bayesnet implementation inference network query by wnpx on 2006-07-13 18:12:20 as along with 1 person jrw
	Operations for Learning with Graphical Models [My Copy] Journal of Artificial Intelligence Research, Vol. 2 (1994), pp. 159-225. by Wray L. Buntine posted to bayesian bayesnet graphicalmodels learning plates review by wnpx on 2006-07-13 18:08:04 as along with 2 people ldietz helsley
	An introduction to graphical models [My Copy] (2001) by Kevin Murphy posted to introduction graphicalmodels dt bayesnet bayesian by wnpx on 2006-07-13 18:02:38 as along with 2 people Borelli dedrop
	Active Learning for Structure in Bayesian Networks [My Copy] In IJCAI (2001), pp. 863-869. by Simon Tong, Daphne Koller posted to active bayesnet bayesnets learning structure by wnpx on 2006-02-24 15:13:45 as along with 2 people abhik ebrochu
	Growing Bayesian network models of gene networks from seed genes. [My Copy] Bioinformatics, Vol. 21 Suppl 2 (1 September 2005) by J. M. Peña, J. Björkegren, J. Tegnér posted to bayesian bayesnet gene learning network by wnpx on 2006-02-24 15:08:42 as along with 5 people and 1 group abhik imouthesmp ramakris naegele heliopais ic4
	Using prior knowledge to improve genetic network reconstruction from microarray data. [My Copy] In Silico Biol, Vol. 4, No. 3. (2004), pp. 335-353. by P. Le Phillip, A. Bahl, L. H. Ungar posted to bayesian bayesnet priorknowledge by wnpx on 2006-02-23 21:02:30 as along with 2 people jo_davies abhik
	Ontology Driven Construction of a Knowledgebase for Bayesian Decision Models Based on UMLS. [My Copy] Stud Health Technol Inform, Vol. 116 (2005), pp. 223-228. by S. Sadeghi, A. Barzi, J. W. Smith posted to bayes bayesian bayesnet kr ontology by wnpx on 2006-02-20 18:34:33 as
	Probability Theory: The Logic of Science (Vol 1) [My Copy] (09 April 2003) by E. T. Jaynes posted to probability dt book bayesnet bayesian by wnpx on 2006-01-31 10:48:11 as along with 13 people and 2 groups csferrie NitinCR shangyung gtaralds jarlet sbarthelme livingthingdan gyuli spirit_of_numenor nathanielvirgo robertoalamino ssomani MBFalcon ComplexAdaptiveSystems DSTO-CAS
	Bayesian Network Analysis of Signaling Networks: A Primer [My Copy] Sci. STKE, Vol. 2005, No. 281. (26 April 2005), pl4. by D. Pe'er posted to bayesian bayesnet inference network signaling toread by wnpx on 2006-01-30 16:32:36 as along with 8 people abhishek_tiwari frohike ptrobajo saman_vp tmmurali Borelli ryang jhatrimatri
	A NEW APPROACH TO DECODING LIFE: Systems Biology [My Copy] Annual Review of Genomics and Human Genetics, Vol. 2, No. 1. (2001), pp. 343-372. by Trey Ideker, Timothy Galitski, Leroy Hood posted to systemsbiology sec-background-sysbio dt background-bio by wnpx on 2006-01-30 11:52:05 as along with 13 people and 1 group kokphinchooi schmidtm abhishek_tiwari jaimie nedwards frohike emmackinnon okarsligil biosv mangtronix shikin lh1 cerca Bioinformatics
	Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network [My Copy] Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934. by Trey Ideker, Vesteinn Thorsson, Jeffrey A. Ranish, et al.Rowan Christmas, Jeremy Buhler, Jimmy K. Eng, Roger Bumgarner, David R. Goodlett, Ruedi Aebersold, Leroy Hood posted to perturbation by wnpx on 2006-01-21 22:34:14 as along with 14 people and 3 groups pmendes myzhang rsaito isimpson snuppepuppan BioGeek dragonrez bpb okarsligil opheliav gurkanbebek raiyar thomaskelder shikin Bioinformatics steinmetzlab GeneGo
	A data integration methodology for systems biology. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 48. (29 November 2005), pp. 17296-17301. by D. Hwang, A. G. Rust, S. Ramsey, et al.J. J. Smith, D. M. Leslie, A. D. Weston, P. de Atauri, J. D. Aitchison, L. Hood, A. F. Siegel, H. Bolouri posted to biology dataintegration sysbio systemsbiology toread by wnpx on 2006-01-21 20:13:43 as along with 21 people and 4 groups daforerog shikin jimineep ggallone brian tmmurali dragonrez okarsligil jfr lfriedl Schmidtc eweaver biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor nedwards athleem Jarman Lab kdl Bioinformatics JJJ
	A tutorial on learning with Bayesian networks [My Copy] (1999), pp. 301-354. by David Heckerman posted to bayesian bayesnet intro tutorial by wnpx on 2006-01-03 18:46:38 as along with 10 people and 1 group birte yaroslavvb JoSeK mjt abhik garyfeng grimm balicea rsantana slygent ReadingLab
	Active Learning for Parameter Estimation in Bayesian Networks [My Copy] In NIPS (2000), pp. 647-653. by Simon Tong, Daphne Koller posted to active activelearning bayesian bayesnet learning by wnpx on 2006-01-03 06:13:00 as along with 1 person abhik
	Being Bayesian About Network Structure. A Bayesian Approach to Structure Discovery in Bayesian Networks [My Copy] (January 2003) by N. Friedman, D. Koller posted to bayesian bayesnets learning structure by wnpx on 2006-01-03 06:11:20 as along with 7 people oyen markusd zeppe abhik eustatic yoh dimatura
	Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data [My Copy] Science, Vol. 308, No. 5721. (22 April 2005), pp. 523-529. by Karen Sachs, Omar Perez, Dana Pe'er, Douglas A. Lauffenburger, Garry P. Nolan posted to bayesian causality inference network signaling by wnpx on 2006-01-02 16:21:28 as along with 23 people and 1 group pkm phoenixzxl sameersoi abhishek_tiwari poirel roys frohike aviad_work czeller emptyhb kentsis kaarsinogen balajis rand_bayes ryang os252 j3xucite noano koller jhatrimatri cdppublications lp2 saman_vp CDP
	Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks. [My Copy] Pac Symp Biocomput (2001), pp. 422-433. by A. J. Hartemink, D. K. Gifford, T. S. Jaakkola, R. A. Young posted to bayesian bayesnet bioinformatics gene network regulation by wnpx on 2006-01-02 16:18:34 as along with 2 people brl noano
	Learning Bayesian Networks: The Combination of Knowledge and Statistical Data [My Copy] Machine Learning, Vol. 20, No. 3. (September 1995), pp. 197-243. by D. Heckerman, D. Geiger, D. M. Chickering posted to algorithm bayesian bayesnets learning structure by wnpx on 2005-12-29 17:27:27 as along with 7 people ldfu yaroslavvb abhik famoreira i-stevenson Pragmatist HugoMarcelo
	Inferring gene networks from time series microarray data using dynamic Bayesian networks. [My Copy] Brief Bioinform, Vol. 4, No. 3. (September 2003), pp. 228-235. by S. Y. Kim, S. Imoto, S. Miyano posted to bayesian dbn review timeseries by wnpx on 2005-12-29 17:11:51 as along with 1 person coela
	A Bayesian approach to reconstructing genetic regulatory networks with hidden factors. [My Copy] Bioinformatics, Vol. 21, No. 3. (1 February 2005), pp. 349-356. by Matthew J. Beal, Francesco Falciani, Zoubin Ghahramani, Claudia Rangel, David L. Wild posted to bayesian dbn dt evaluationstudies hiddenvariables networks ssm variationalbayes by wnpx on 2005-12-29 17:10:38 as
	NIH Working Definition of Bioinformatics and Computational Biology [My Copy] (17 July 2000) by Michael Huerta, Florence Haseltine, Yuan Liu, Gregory Downing, Belinda Seto posted to bioinformatics computational-biology definition dt toinclude by wnpx on 2007-10-15 15:17:30 as
	Analyzing yeast protein-protein interaction data obtained from different sources [My Copy] Nat Biotech, Vol. 20, No. 10. (October 2002), pp. 991-997. by Gary D. Bader, Christopher W. Hogue posted to dataintegration proteininteraction yeast by wnpx on 2007-07-27 05:31:53 as along with 8 people and 1 group lawraga csanford dragonrez lfriedl balajis dgront iris_2001 karfunkel kdl
	From in vivo to in silico biology and back [My Copy] Nature, Vol. 443, No. 7111. (05 October 2006), pp. 527-533. by Barbara Di Ventura, Caroline Lemerle, Konstantinos Michalodimitrakis, Luis Serrano posted to sysbio toread by wnpx on 2007-07-27 05:31:05 as along with 8 people remoteFuture VGreiff bertelsen aalibes mmt dbikard jrbanga vietanh0
	A Markov Random Field Model for Network-based Analysis of Genomic Data. [My Copy] Bioinformatics (5 May 2007) by Zhi Wei, Hongzhe Li posted to gene markov markovnets mrf network projdt by wnpx on 2007-05-22 10:43:54 as along with 2 people iris_2001 ptrobajo
	Probabilistic inference of molecular networks from noisy data sources [My Copy] Bioinformatics, Vol. 20, No. 8. (22 May 2004), pp. 1205-1213. by Ivan Iossifov, Michael Krauthammer, Carol Friedman, et al.Vasileios Hatzivassiloglou, Joel S. Bader, Kevin P. White, Andrey Rzhetsky posted to bayesian dt inference od toread by wnpx on 2007-03-22 21:44:29 as along with 2 people shashank_hi iris_2001
	Building with a scaffold: emerging strategies for high- to low-level cellular modeling. [My Copy] Trends Biotechnol, Vol. 21, No. 6. (June 2003), pp. 255-262. by T. Ideker, D. Lauffenburger posted to modeling sysbio toread by wnpx on 2007-03-21 19:15:59 as along with 2 people and 2 groups mhucka roland_ewald dIEMoSIRIS MoSi-Rostock
	Combining biological networks to predict genetic interactions. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 44. (2 November 2004), pp. 15682-15687. by S. L. Wong, L. V. Zhang, A. H. Tong, et al.Z. Li, D. S. Goldberg, O. D. King, G. Lesage, M. Vidal, B. Andrews, H. Bussey, C. Boone, F. P. Roth posted to dataintegration toread by wnpx on 2007-03-18 22:15:09 as along with 7 people and 3 groups dbk lfriedl balajis reidy eukfn patrycja_missiuro ksiek streptomyces dbk-lab kdl
	Integrating 'omic' information: a bridge between genomics and systems biology. [My Copy] Trends Genet, Vol. 19, No. 10. (October 2003), pp. 551-560. by H. Ge, A. J. Walhout, M. Vidal posted to dataintegration dt sysbio toread by wnpx on 2007-03-18 22:07:17 as along with 7 people and 2 groups thegoose2 tharris lfriedl biosv reidy grahamc sanchezbuelna C. elegans / WormBase kdl
	Search for organising principles: understanding in systems biology [My Copy] Systems Biology, IEE, Vol. 1, No. 1. (2004), pp. 19-27. by M. D. Mesarovic, S. N. Sreenath, J. D. Keene posted to dt sysbio toread by wnpx on 2007-03-18 22:04:50 as along with 2 people chihchun_chen biosv
	Systems biology: in the broadest sense of the word [My Copy] Environmental Microbiology, Vol. 7, No. 4. (April 2005), pp. 482-483. by W. Ussery, Jensen L. Juhl posted to dt sysbio toread by wnpx on 2007-03-18 22:03:13 as along with 2 people biosv larsjuhljensen
	Systems biology: its practice and challenges. [My Copy] Cell, Vol. 121, No. 4. (20 May 2005), pp. 511-513. by Alan Aderem posted to dt sysbio toread by wnpx on 2007-03-18 22:02:41 as along with 4 people and 2 groups Badger LeightonP biosv carmaus dIEMoSIRIS MoSi-Rostock
	SYSTEMS BIOLOGY: The variable cell [My Copy] Nature Reviews Molecular Cell Biology, Vol. 6, No. 11. (01 November 2005), pp. 822-822. by Arianne Heinrichs posted to dt sysbio toread by wnpx on 2007-03-18 22:02:05 as along with 1 person biosv
	Systems Biology: Will it work? [My Copy] Systems Biology, IEE, Vol. 2, No. 1. (2005), pp. 1-4. by C. Sansom posted to dt sysbio toread by wnpx on 2007-03-18 21:59:28 as along with 2 people chihchun_chen biosv
	SYSTEMS BIOLOGY: Life's Complexity Pyramid [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 763-764. by Zoltan N. Oltvai, Albert-Laszlo Barabasi posted to dt sysbio toread by wnpx on 2007-02-01 17:20:00 as along with 13 people and 6 groups joschaschmiedt navigators tomhebbron Scis0000002 Diego_Prada agomez eldan yas sameetmehta jwdietrich mattjb franklin Ema MathBio Cybernetics ComplexAdaptiveSystems DSTO-CAS Biomedical_Cybernetics AQUA-FONTIS-Study
	A formal language for computational systems biology. [My Copy] OMICS, Vol. 8, No. 4. (2004), pp. 370-380. by D. D. Errampalli, C. Priami, P. Quaglia posted to toread sysbio dt by wnpx on 2007-01-21 22:05:07 as along with 3 people eldan Doug josepe
	The nature of systems biology. [My Copy] Trends in microbiology, Vol. 15, No. 1. (17 January 2007), pp. 45-50. by Frank J. Bruggeman, Hans V. Westerhoff posted to dt sysbio toread by wnpx on 2007-01-21 21:17:03 as along with 13 people and 5 groups schwartzjmc babakap alorena eldan jwm jmeppley rabu aswin kengg dolhuis livingthingdan mkrajnak ptpases Radiation_Damage Stressosome SNE livingthing Plantandetc
	Bridging structural biology and genomics: assessing protein interaction data with known complexes [My Copy] Trends in Genetics, Vol. 18, No. 10. (1 October 2002), pp. 529-536. by A. Edwards posted to bayesian complex dt interaction network protein toread by wnpx on 2006-08-24 18:45:59 as along with 6 people and 1 group flbarroso ubcg08l lfriedl reidy ruvido wilbur kdl
	What is complexity? [My Copy] Bioessays, Vol. 24, No. 12. (December 2002), pp. 1085-1094. by C. Adami posted to complexity sysbio by wnpx on 2006-07-26 21:03:59 as along with 21 people and 10 groups daveGerrard qaramazov korakot hamish A_Olympia AdrianMiles alexisgallagher citematanalike yish ddahlem pverstra biosv jules59 sunilbajpai cgershen mattjb mbeautru timflutre tnhh TomQ rrbarb BergmanLab Philosophy_of_Information Blog_and_Wiki_Research mathgamespatterns dtl vds-arg eni macc ComplexAdaptiveSystems DSTO-CAS
	Systems biology may work when we learn to understand the parts in terms of the whole [My Copy] Biochemical Society Transactions, Vol. 33, No. 3. (June 2005), pp. 516-519. by Cornish-Bowden, Cardenas posted to sysbio by wnpx on 2006-07-26 21:03:33 as along with 1 person biosv

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bayesian	151
dt	120
network	115
sysbio	67
gene	54
toread	49
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