wnpx's gene [54 articles] Export

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	Exploring the independence of gene regulatory modules [My Copy] In Probabilistic Modeling and Machine Learning in Structural and Systems Biology (PMSB 2006) (17-18 June 2006) by Janne Nikkilä, Antti Honkela, Samuel Kaski posted to gene independence network regulation by wnpx on 2007-07-27 17:36:46 as
	A New Approach to Analyzing Gene Expression Time Series Data [My Copy] by Ziv B. Joseph, Georg Gerber, David K. Gifford, Tommi S. Jaakkola, Et posted to expression gene timeseries by wnpx on 2007-06-11 07:20:27 as along with 1 person dimatura
	Module Networks: Discovering Regulatory Modules and their Condition Specific Regulators from Gene Expression Data [My Copy] by Eran Segal, Michael Shapira, Aviv Regev, et al.Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman posted to bayesian gene modeule network regulation by wnpx on 2007-06-11 07:20:10 as along with 2 people dimatura lp2
	A Markov Random Field Model for Network-based Analysis of Genomic Data. [My Copy] Bioinformatics (5 May 2007) by Zhi Wei, Hongzhe Li posted to gene markov markovnets mrf network projdt by wnpx on 2007-05-22 10:43:54 as along with 2 people iris_2001 ptrobajo
	Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions [My Copy] Nat Genet, Vol. 39, No. 2. (07 January 2007), pp. 199-206. by Robert P. Onge, Ramamurthy Mani, Julia Oh, et al.Michael Proctor, Eula Fung, Ronald W. Davis, Corey Nislow, Frederick P. Roth, Guri Giaever posted to deletion gene network by wnpx on 2007-03-22 21:50:36 as along with 8 people gwenknight nzm ajbattle aalibes tmmurali Ao_Li2007 gwcarter raiyar
	Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network. [My Copy] Genome Res, Vol. 13, No. 11. (November 2003), pp. 2396-2405. by D. E. Zak, G. E. Gonye, J. S. Schwaber, F. J. Doyle posted to expression gene inference perturbation by wnpx on 2007-03-22 21:46:05 as along with 5 people ryang jrbanga bertelsen lukaswindhager aheilbut
	How to infer gene networks from expression profiles [My Copy] Molecular Systems Biology, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted to expression gene inference network by wnpx on 2007-03-17 11:37:39 as along with 38 people and 3 groups Jporci beete tonamswish zufar nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl bertelsen isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo Borelli ggallone ptrobajo druvus cswinburne jfr eckart_bindewald nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais mariakmejia tmmurali Jarman Lab EBI-regulation Plantandetc
	Modelling gene expression data using dynamic Bayesian networks [My Copy] (1999) by Kevin Murphy, Saira Mian posted to bayesian dbn dt expression expressiondata gene network by wnpx on 2007-02-05 18:04:33 as along with 2 people arider1 dimatura
	A Bayesian connectivity-based approach to constructing probabilistic gene regulatory networks. [My Copy] Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 2918-2927. by X. Zhou, X. Wang, R. Pal, I. Ivanov, M. Bittner, E. R. Dougherty posted to reconstruction network inference gene bayesian by wnpx on 2007-02-05 18:00:21 as
	Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana. [My Copy] Genome Biol, Vol. 5, No. 11. (2004) by A. Wille, P. Zimmermann, E. Vranová, et al.A. Fürholz, O. Laule, S. Bleuler, L. Hennig, A. Prelic, P. von Rohr, L. Thiele, E. Zitzler, W. Gruissem, P. Bühlmann posted to sparse network modeling graphical gene gaussian by wnpx on 2007-02-05 17:56:50 as
	Modeling transcriptional control in gene networks--methods, recent results, and future directions. [My Copy] Bull Math Biol, Vol. 62, No. 2. (March 2000), pp. 247-292. by P. Smolen, D. A. Baxter, J. H. Byrne posted to transcription network modeling gene by wnpx on 2007-02-05 17:55:11 as along with 2 people and 1 group dlobo klo GEB
	Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 12. (12 August 2004), pp. 1877-1886. by E. Sontag, A. Kiyatkin, B. N. Kholodenko posted to timeseries reconstruction proteindata metabolitedata inference getwork gene expression dynamic by wnpx on 2007-02-05 17:53:38 as along with 5 people and 3 groups schwartzjmc camster dbk mrm smgomez streptomyces dbk-lab GomezLab
	Reconstructing biological networks using conditional correlation analysis. [My Copy] Bioinformatics, Vol. 21, No. 6. (March 2005), pp. 765-773. by J. J. Rice, Y. Tu, G. Stolovitzky posted to reverseengineering regulation reconstruction network inference gene correlation by wnpx on 2007-02-05 17:48:37 as
	Probabilistic representation of gene regulatory networks [My Copy] Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2258-2269. by Linyong Mao, Haluk Resat posted to regulation network gene by wnpx on 2007-02-05 17:46:39 as along with 1 person hendrik85
	Reconciling gene expression data with known genome-scale regulatory network structures. [My Copy] Genome Res, Vol. 13, No. 11. (November 2003), pp. 2423-2434. by M. J. Herrgård, M. W. Covert, B. Ø. Palsson posted to network motif gene expression by wnpx on 2007-02-05 17:43:35 as along with 2 people opheliav tvdbulck
	Genetic network inference: from co-expression clustering to reverse engineering. [My Copy] Bioinformatics, Vol. 16, No. 8. (August 2000), pp. 707-726. by P. D'haeseleer, S. Liang, R. Somogyi posted to reverseengineering network gene by wnpx on 2007-02-05 17:40:58 as along with 5 people kemalpak knowlengr nolodie bayesian qfwills
	Transcriptional networks: reverse-engineering gene regulation on a global scale. [My Copy] Curr Opin Microbiol, Vol. 7, No. 6. (December 2004), pp. 638-646. by G. Chua, M. D. Robinson, Q. Morris, T. R. Hughes posted to transcription review reverseengineering regulation network gene by wnpx on 2007-02-05 17:38:34 as along with 2 people and 1 group nickluscombe koller EBI-regulation
	Transcriptional Regulatory Networks in Saccharomyces cerevisiae [My Copy] Science, Vol. 298, No. 5594. (October 2002), pp. 799-804. by Tong I. Lee, Nicola J. Rinaldi, François Robert, et al.Duncan T. Odom, Ziv Bar-Joseph, Georg K. Gerber, Nancy M. Hannett, Christopher T. Harbison, Craig M. Thompson, Itamar Simon, Julia Zeitlinger, Ezra G. Jennings, Heather L. Murray, Benjamin D. Gordon, Bing Ren, John J. Wyrick, Jean-Bosco Tagne, Thomas L. Volkert, Ernest Fraenkel, David K. Gifford, Richard A. Young posted to transcription regulation network gene by wnpx on 2007-02-01 17:19:31 as along with 1 person eldan
	Integrating transcription factor binding site information with gene expression datasets. [My Copy] Bioinformatics (24 November 2006) by Ian B B. Jeffery, Stephen F F. Madden, Paul A A. McGettigan, Guy Perrière, Aedín C C. Culhane, Desmond G G. Higgins posted to gene expressiondata by wnpx on 2007-01-21 21:18:25 as along with 4 people and 1 group guhjy dpollard gpalidwor SeungjoonOh EisenLab
	Computational strategy for discovering druggable gene networks from genome-wide RNA expression profiles. [My Copy] Pac Symp Biocomput (2006), pp. 559-571. by S. Imoto, Y. Tamada, H. Araki, et al.K. Yasuda, C. G. Print, S. D. Charnock-Jones, D. Sanders, C. J. Savoie, K. Tashiro, S. Kuhara, S. Miyano posted to network gene expressiondata bayesian by wnpx on 2007-01-21 14:39:38 as along with 2 people eldan tardigrade
	Bayesian Methods for Elucidating Genetic Regulatory Networks [My Copy] IEEE Intelligent Systems, Vol. 17, No. 2. (March 2002), pp. 37-43. by Alexander J. Hartemink, David K. Gifford, Tommi S. Jaakkola, Richard A. Young posted to network gene dt bayesian by wnpx on 2007-01-15 00:13:01 as along with 1 person megraw
	Transcriptional Regulation by Competing Transcription Factor Modules [My Copy] PLoS Computational Biology, Vol. 2, No. 12. (1 December 2006), e164. by Rutger Hermsen, Sander Tans, Ten posted to gene module network regulation by wnpx on 2007-01-06 18:22:41 as along with 3 people nirfriedman zwang nklee
	BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network. [My Copy] Bioinformatics (27 September 2006) by Xiaohui Chen, Ming Chen, Kaida Ning posted to bayesian bayesnet gene network r regulation by wnpx on 2006-11-18 18:09:29 as along with 6 people guhjy frohike jhatrimatri shigepong ramakris waszak
	Comparing gene expression networks in a multi-dimensional space to extract similarities and differences between organisms. [My Copy] Bioinformatics (9 March 2006) by Gaëlle Lelandais, Pierre Vincens, Anne Badel-Chagnon, Stéphane Vialette, Claude Jacq, Serge Hazout posted to expression gene network by wnpx on 2006-09-02 11:30:36 as along with 1 person and 1 group dpollard EisenLab
	An effective structure learning method for constructing gene networks. [My Copy] Bioinformatics, Vol. 22, No. 11. (1 June 2006), pp. 1367-1374. by X. W. Chen, G. Anantha, X. Wang posted to bayesian gene learning network structure by wnpx on 2006-09-02 11:29:44 as along with 1 person ramakris
	Extracting Gene Networks for Low-Dose Radiation Using Graph Theoretical Algorithms [My Copy] PLoS Computational Biology, Vol. 2, No. 7. (1 July 2006), e89. by Brynn H. Voy, Jon A. Scharff, Andy D. Perkins, et al.Arnold M. Saxton, Bhavesh Borate, Elissa J. Chesler, Lisa K. Branstetter, Michael A. Langston posted to gene graphtheory network by wnpx on 2006-08-05 22:26:36 as along with 2 people jiny jfr
	A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules [My Copy] Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255. by Joshua M. Stuart, Eran Segal, Daphne Koller, Stuart K. Kim posted to gene module network by wnpx on 2006-07-30 16:45:34 as along with 24 people and 7 groups sficklin roys thegoose2 cswinburne carlk saket pengchy nolodie jeremymiller tharris dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade opheliav neveaire macle raylim lp2 karfunkel vertikalist C. elegans / WormBase kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience BTS-PT-AS-CS
	Reverse engineering of genetic networks with Bayesian networks. [My Copy] Biochem Soc Trans, Vol. 31, No. Pt 6. (December 2003), pp. 1516-1518. by D. Husmeier posted to bayesian gene network by wnpx on 2006-07-26 20:56:45 as
	Gene network inference from incomplete expression data: transcriptional control of hematopoietic commitment. [My Copy] Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 731-738. by K. Missal, M. A. Cross, D. Drasdo posted to bayesian gene network by wnpx on 2006-07-26 20:56:21 as
	A Bayesian regression approach to the inference of regulatory networks from gene expression data. [My Copy] Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3131-3137. by S. Rogers, M. Girolami posted to bayesian expression gene network regression regulation by wnpx on 2006-07-26 20:55:22 as
	Empirical bayes estimation of a sparse vector of gene expression changes. [My Copy] Stat Appl Genet Mol Biol, Vol. 4, No. 1. (2005) by S. Erickson, C. Sabatti posted to bayes expression gene mcmc by wnpx on 2006-07-26 20:54:58 as
	Biomarker discovery in microarray gene expression data with Gaussian processes. [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3385-3393. by W. Chu, Z. Ghahramani, F. Falciani, D. L. Wild posted to expression gaussianprocess gene by wnpx on 2006-07-26 20:54:36 as along with 2 people kentsis blackm0k
	Using protein-protein interactions for refining gene networks estimated from microarray data by Bayesian networks. [My Copy] Pac Symp Biocomput (2004), pp. 336-347. by N. Nariai, S. Kim, S. Imoto, S. Miyano posted to bayesian gene interaction network protein by wnpx on 2006-07-26 20:54:15 as along with 2 people noano Borelli
	Gene networks as a tool to understand transcriptional regulation. [My Copy] Genet Mol Res, Vol. 5, No. 1. (31 March 2006), pp. 254-268. by D. F. Veiga, F. F. Vicente, G. Bastos posted to bayesian gene network reconstruction regulation by wnpx on 2006-07-26 20:51:28 as
	Discovering molecular pathways from protein interaction and gene expression data [My Copy] Bioinformatics, Vol. 19, No. suppl_1. (3 July 2003), pp. i264-272. by E. Segal, H. Wang, D. Koller posted to bio expressiondata gene interactiondata learning network pathway protein structure by wnpx on 2006-05-28 15:49:04 as along with 7 people and 1 group yaredo jfr lfriedl noano bhaddow edwardmorrissey jiny kdl
	Stochasticity in gene expression: from theories to phenotypes [My Copy] Nat Rev Genet, Vol. 6, No. 6. (10 May 2005), pp. 451-464. by Mads Kaern, Timothy C. Elston, William J. Blake, James J. Collins posted to expression gene stochasticity by wnpx on 2006-04-18 14:40:10 as along with 8 people pkm bertelsen boko4ikameto bcondon ccots tabu balabu timflutre
	Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. [My Copy] Nature genetics, Vol. 34, No. 2. (11 June 2003), pp. 166-176. by Eran Segal, Michael Shapira, Aviv Regev, et al.Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman posted to data expression gene module networks by wnpx on 2006-04-18 14:38:44 as along with 26 people and 1 group chasmand stharward bertelsen ipark-kaist VGreiff benjaminsb wangbo ajbattle cswinburne ggallone ealloza orzenil tuck bayesian tabu koller olympos fishtank dimatura karfunkel roys pkm dragonrez tvdbulck chrisamiller aviad_work Jarman Lab
	Reconstruction of gene networks using Bayesian learning and manipulation experiments [My Copy] Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 2934-2942. by Iosifina Pournara, Lorenz Wernisch posted to bayesian experimentaldata gene network reconstruction by wnpx on 2006-04-18 14:28:58 as along with 4 people and 2 groups czeller lfriedl aleks Yumyai kdl Compilers
	Growing Bayesian network models of gene networks from seed genes. [My Copy] Bioinformatics, Vol. 21 Suppl 2 (1 September 2005) by J. M. Peña, J. Björkegren, J. Tegnér posted to bayesian bayesnet gene learning network by wnpx on 2006-02-24 15:08:42 as along with 5 people and 1 group abhik imouthesmp ramakris naegele heliopais ic4
	Utilizing evolutionary information and gene expression data for estimating gene networks with bayesian network models. [My Copy] J Bioinform Comput Biol, Vol. 3, No. 6. (December 2005), pp. 1295-1313. by Y. Tamada, H. Bannai, S. Imoto, T. Katayama, M. Kanehisa, S. Miyano posted to bayes bayesian bayesnet gene network by wnpx on 2006-02-24 14:51:33 as along with 1 person abhik
	Qualitative analysis of gene networks. [My Copy] Pac Symp Biocomput (1998), pp. 77-88. by D. Thieffry, R. Thomas posted to analysis gene network regulatio stability by wnpx on 2006-01-30 13:57:46 as along with 2 people holan tabu
	Development of a system for the inference of large scale genetic networks. [My Copy] Pac Symp Biocomput (2001), pp. 446-458. by Y. Maki, D. Tominaga, M. Okamoto, S. Watanabe, Y. Eguchi posted to bayesian dbn gene inference network by wnpx on 2006-01-30 13:50:59 as
	Reverse engineering gene networks: integrating genetic perturbations with dynamical modeling. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 10. (13 May 2003), pp. 5944-5949. by Jesper Tegner, Stephen K. Yeung, Jeff Hasty, James J. Collins posted to dynamical gene modeling network perturbation reverse-engineering by wnpx on 2006-01-09 21:34:09 as along with 5 people and 3 groups rklancer aheilbut rhem1224 rubendrr madhadron TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells
	Reverse engineering gene networks using singular value decomposition and robust regression [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 9. (30 April 2002), pp. 6163-6168. by M. K. Stephen Yeung, Jesper TegnÃ©r, James J. Collins posted to gene network regression reverse-engineering svd by wnpx on 2006-01-09 21:33:24 as along with 8 people and 3 groups nicholasflann fastjoe23 baldazen ggallone rklancer dragonrez rhem1224 rubendrr TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells
	Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation -- Tamayo et al. 96 (6): 2907 -- Proceedings of the National Academy of Sciences [My Copy] Proc Natl Acad Sci U S A, Vol. 96, No. 6. (16 March 1999), pp. 2907-2912. by Pablo Tamayo, Donna Slonim, Jill Mesirov, et al.Qing Zhudagger, Sutisak Kitareewandagger, Ethan Dmitrovskydagger, Eric S. Lander, Todd R. Golub posted to expression expressiondata gene som by wnpx on 2006-01-05 22:45:10 as
	Computational discovery of gene modules and regulatory networks [My Copy] Nat Biotech, Vol. 21, No. 11. (12 October 2003), pp. 1337-1342. by Ziv Bar-Joseph, Georg K. Gerber, Tong I. Lee, et al.Nicola J. Rinaldi, Jane Y. Yoo, Francois Robert, D. Benjamin Gordon, Ernest Fraenkel, Tommi S. Jaakkola, Richard A. Young, David K. Gifford posted to gene module network regulation by wnpx on 2006-01-03 18:45:33 as along with 16 people and 1 group stharward myzhang wangbo Borelli ggrot dragonrez bayesian nickluscombe koller frohike karfunkel roys dquest balicea carlk tvdbulck EBI-regulation
	Rich probabilistic models for gene expression [My Copy] Bioinformatics, Vol. 17, No. suppl_1. (1 June 2001), pp. S243-252. by Eran Segal, Ben Taskar, Audrey Gasch, Nir Friedman, Daphne Koller posted to clustering expression gene probabilistic by wnpx on 2006-01-03 18:44:03 as along with 4 people and 1 group meanerelk lfriedl balicea frohike kdl
	Validation and refinement of gene-regulatory pathways on a network of physical interactions. [My Copy] Genome Biol, Vol. 6, No. 7. (2005) by C. H. Yeang, H. C. Mak, S. McCuine, C. Workman, T. Jaakkola, T. Ideker posted to gene knockoutdata network regulation by wnpx on 2006-01-03 06:14:09 as along with 14 people and 1 group kaarsinogen isimpson hplatero snuppepuppan abhik tmmurali textoris noano koller ccr cdppublications AlexanderPico carlk jago CDP
	From gene networks to gene function. [My Copy] Genome Res, Vol. 13, No. 12. (December 2003), pp. 2568-2576. by T. Schlitt, K. Palin, J. Rung, et al.S. Dietmann, M. Lappe, E. Ukkonen, A. Brazma posted to gene network by wnpx on 2006-01-02 16:24:24 as along with 2 people and 1 group lfriedl opheliav kdl
	Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks. [My Copy] Pac Symp Biocomput (2001), pp. 422-433. by A. J. Hartemink, D. K. Gifford, T. S. Jaakkola, R. A. Young posted to bayesian bayesnet bioinformatics gene network regulation by wnpx on 2006-01-02 16:18:34 as along with 2 people brl noano

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