wnpx's network [115 articles] Export

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	Inferring Transcriptional Regulatory Networks from High-throughput Data. [My Copy] Bioinformatics (22 September 2007) by Rui-Sheng S. Wang, Yong Wang, Xiang-Sun S. Zhang, Luonan Chen posted to inference network regulation transcription by wnpx on 2007-11-21 15:35:54 as along with 5 people Borelli rdiaz sebastien_vigneau shigepong cabbagezs
	Functional annotation and network reconstruction through cross-platform integration of microarray data [My Copy] Nat Biotech, Vol. 23, No. 2. (16 February 2005), pp. 238-243. by Xianghong J. Zhou, Ming-Chih J. Kao, Haiyan Huang, et al.Angela Wong, Juan Nunez-Iglesias, Michael Primig, Oscar M. Aparicio, Caleb E. Finch, Todd E. Morgan, Wing H. Wong posted to dataintegration dt network reconstruction by wnpx on 2007-08-10 09:50:36 as along with 8 people and 2 groups Borelli cswinburne setar andytseng imouthesmp lyongu rdiaz bsmagic Bioinformatics bioinplant
	Exploring the independence of gene regulatory modules [My Copy] In Probabilistic Modeling and Machine Learning in Structural and Systems Biology (PMSB 2006) (17-18 June 2006) by Janne Nikkilä, Antti Honkela, Samuel Kaski posted to gene independence network regulation by wnpx on 2007-07-27 17:36:46 as
	Module Networks: Discovering Regulatory Modules and their Condition Specific Regulators from Gene Expression Data [My Copy] by Eran Segal, Michael Shapira, Aviv Regev, et al.Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman posted to bayesian gene modeule network regulation by wnpx on 2007-06-11 07:20:10 as along with 2 people dimatura lp2
	Network-based prediction of protein function [My Copy] Molecular Systems Biology, Vol. 3 (13 March 2007) by Roded Sharan, Igor Ulitsky, Ron Shamir posted to function network prediction protein by wnpx on 2007-06-11 07:19:43 as along with 24 people and 1 group cerca ptrobajo kiekyon AbnerCYH roys jwhitney dragonrez Sonix mtaschuk babakap phoenixzxl druvus pengchy jjray cmmorel julius mikaelhuss massivemayhem cjeans iris_2001 karfunkel mingzhi ellakat carlk SysbioMPI-TCells
	A Markov Random Field Model for Network-based Analysis of Genomic Data. [My Copy] Bioinformatics (5 May 2007) by Zhi Wei, Hongzhe Li posted to gene markov markovnets mrf network projdt by wnpx on 2007-05-22 10:43:54 as along with 2 people iris_2001 ptrobajo
	Creation and implications of a phenome-genome network. [My Copy] Nature biotechnology, Vol. 24, No. 1. (10 January 2006), pp. 55-62. by Atul J. Butte, Isaac S. Kohane posted to network by wnpx on 2007-04-01 11:40:08 as along with 10 people and 2 groups bertelsen daforerog BioGeek bpb okarsligil balajis tag elsiatcase eukfn guhjy Bioinformatics metric_embeddings
	Alternative routes and mutational robustness in complex regulatory networks [My Copy] Biosystems, Vol. 88, No. 1-2. (March 2007), pp. 163-172. by Andreas Wagner, Jeremiah Wright posted to network regulation signaling sysbio by wnpx on 2007-03-31 20:32:55 as along with 2 people kaarsinogen eldan
	Metabolic stability and epigenesis in randomly constructed genetic nets [My Copy] Journal of Theoretical Biology, Vol. 22, No. 3. (March 1969), pp. 437-467. by S. Kauffman posted to boolean network by wnpx on 2007-03-22 21:53:03 as along with 6 people Dangerfc tomhebbron kinop verdicchio eldan gcalda
	Taking the mystery out of biological networks. [My Copy] EMBO Rep, Vol. 5, No. 4. (April 2004), pp. 349-350. by P. Aloy, R. B. Russell posted to network sysbio by wnpx on 2007-03-22 21:51:08 as along with 3 people bicko chad_davis mmt
	Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions [My Copy] Nat Genet, Vol. 39, No. 2. (07 January 2007), pp. 199-206. by Robert P. Onge, Ramamurthy Mani, Julia Oh, et al.Michael Proctor, Eula Fung, Ronald W. Davis, Corey Nislow, Frederick P. Roth, Guri Giaever posted to deletion gene network by wnpx on 2007-03-22 21:50:36 as along with 8 people gwenknight nzm ajbattle aalibes tmmurali Ao_Li2007 gwcarter raiyar
	Iterative approach to model identification of biological networks. [My Copy] BMC Bioinformatics, Vol. 6 (2005), 155. by K. G. Gadkar, R. Gunawan, Doyle posted to modeling network sysbio by wnpx on 2007-03-22 21:48:58 as along with 1 person jrbanga
	Identification of functional modules using network topology and high-throughput data. [My Copy] BMC systems biology, Vol. 1, No. 1. (2007), 8. by Igor Ulitsky, Ron Shamir posted to dataintegration network by wnpx on 2007-03-22 21:47:40 as along with 18 people greg akshayk ptrobajo yaredo isimpson qluo aheilbut zufar roys frohike tmmurali dragonrez jfr Ao_Li2007 lyndon bertelsen ellakat carlk
	How to infer gene networks from expression profiles [My Copy] Molecular Systems Biology, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted to expression gene inference network by wnpx on 2007-03-17 11:37:39 as along with 38 people and 3 groups Jporci beete tonamswish zufar nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl bertelsen isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo Borelli ggallone ptrobajo druvus cswinburne jfr eckart_bindewald nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais mariakmejia tmmurali Jarman Lab EBI-regulation Plantandetc
	Iterative approach to model identification of biological networks. [My Copy] BMC Bioinformatics, Vol. 6 (20 June 2005) by K. G. Gadkar, R. Gunawan, F. J. Doyle posted to dynamic modeling network by wnpx on 2007-02-26 22:16:16 as along with 3 people carlk eweaver jrbanga
	Modelling gene expression data using dynamic Bayesian networks [My Copy] (1999) by Kevin Murphy, Saira Mian posted to bayesian dbn dt expression expressiondata gene network by wnpx on 2007-02-05 18:04:33 as along with 2 people arider1 dimatura
	A Bayesian connectivity-based approach to constructing probabilistic gene regulatory networks. [My Copy] Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 2918-2927. by X. Zhou, X. Wang, R. Pal, I. Ivanov, M. Bittner, E. R. Dougherty posted to reconstruction network inference gene bayesian by wnpx on 2007-02-05 18:00:21 as
	Physical network models. [My Copy] J Comput Biol, Vol. 11, No. 2-3. (2004), pp. 243-262. by C. H. Yeang, T. Ideker, T. Jaakkola posted to regulation physicalmodel network dataintegration datafusion by wnpx on 2007-02-05 17:58:11 as along with 3 people tmmurali noano koller
	Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana. [My Copy] Genome Biol, Vol. 5, No. 11. (2004) by A. Wille, P. Zimmermann, E. Vranová, et al.A. Fürholz, O. Laule, S. Bleuler, L. Hennig, A. Prelic, P. von Rohr, L. Thiele, E. Zitzler, W. Gruissem, P. Bühlmann posted to sparse network modeling graphical gene gaussian by wnpx on 2007-02-05 17:56:50 as
	Modeling transcriptional control in gene networks--methods, recent results, and future directions. [My Copy] Bull Math Biol, Vol. 62, No. 2. (March 2000), pp. 247-292. by P. Smolen, D. A. Baxter, J. H. Byrne posted to transcription network modeling gene by wnpx on 2007-02-05 17:55:11 as along with 2 people and 1 group dlobo klo GEB
	Reconstructing biological networks using conditional correlation analysis. [My Copy] Bioinformatics, Vol. 21, No. 6. (March 2005), pp. 765-773. by J. J. Rice, Y. Tu, G. Stolovitzky posted to reverseengineering regulation reconstruction network inference gene correlation by wnpx on 2007-02-05 17:48:37 as
	Probabilistic representation of gene regulatory networks [My Copy] Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2258-2269. by Linyong Mao, Haluk Resat posted to regulation network gene by wnpx on 2007-02-05 17:46:39 as along with 1 person hendrik85
	Reconciling gene expression data with known genome-scale regulatory network structures. [My Copy] Genome Res, Vol. 13, No. 11. (November 2003), pp. 2423-2434. by M. J. Herrgård, M. W. Covert, B. Ø. Palsson posted to network motif gene expression by wnpx on 2007-02-05 17:43:35 as along with 2 people opheliav tvdbulck
	Genetic network inference: from co-expression clustering to reverse engineering. [My Copy] Bioinformatics, Vol. 16, No. 8. (August 2000), pp. 707-726. by P. D'haeseleer, S. Liang, R. Somogyi posted to reverseengineering network gene by wnpx on 2007-02-05 17:40:58 as along with 5 people kemalpak knowlengr nolodie bayesian qfwills
	Transcriptional networks: reverse-engineering gene regulation on a global scale. [My Copy] Curr Opin Microbiol, Vol. 7, No. 6. (December 2004), pp. 638-646. by G. Chua, M. D. Robinson, Q. Morris, T. R. Hughes posted to transcription review reverseengineering regulation network gene by wnpx on 2007-02-05 17:38:34 as along with 2 people and 1 group nickluscombe koller EBI-regulation
	Transcriptional Regulatory Networks in Saccharomyces cerevisiae [My Copy] Science, Vol. 298, No. 5594. (October 2002), pp. 799-804. by Tong I. Lee, Nicola J. Rinaldi, François Robert, et al.Duncan T. Odom, Ziv Bar-Joseph, Georg K. Gerber, Nancy M. Hannett, Christopher T. Harbison, Craig M. Thompson, Itamar Simon, Julia Zeitlinger, Ezra G. Jennings, Heather L. Murray, Benjamin D. Gordon, Bing Ren, John J. Wyrick, Jean-Bosco Tagne, Thomas L. Volkert, Ernest Fraenkel, David K. Gifford, Richard A. Young posted to transcription regulation network gene by wnpx on 2007-02-01 17:19:31 as along with 1 person eldan
	A model of transcriptional regulatory networks based on biases in the observed regulation rules [My Copy] Complexity, Vol. 7, No. 4. (14 August 2002), pp. 23-40. by Stephen E. Harris, Bruce K. Sawhill, Andrew Wuensche, Stuart Kauffman posted to network boolean by wnpx on 2007-01-21 22:01:15 as along with 3 people and 2 groups dlobo camster eldan GEB dbk-lab
	Evolution, Interactions, and Biological Networks [My Copy] PLoS Biology, Vol. 5, No. 1. (1 January 2007), e11. by Joshua S. Weitz, Philip N. Benfey, Ned S. Wingreen posted to toread network by wnpx on 2007-01-21 22:00:15 as along with 17 people and 1 group Borelli wangbo anphony eldan aalibes cmmorel balajis cerkut jhatrimatri josepe timothee srfairclough hmk bootsy Ema bpcusack skumagai contact-id
	Computational strategy for discovering druggable gene networks from genome-wide RNA expression profiles. [My Copy] Pac Symp Biocomput (2006), pp. 559-571. by S. Imoto, Y. Tamada, H. Araki, et al.K. Yasuda, C. G. Print, S. D. Charnock-Jones, D. Sanders, C. J. Savoie, K. Tashiro, S. Kuhara, S. Miyano posted to network gene expressiondata bayesian by wnpx on 2007-01-21 14:39:38 as along with 2 people eldan tardigrade
	Bayesian Methods for Elucidating Genetic Regulatory Networks [My Copy] IEEE Intelligent Systems, Vol. 17, No. 2. (March 2002), pp. 37-43. by Alexander J. Hartemink, David K. Gifford, Tommi S. Jaakkola, Richard A. Young posted to network gene dt bayesian by wnpx on 2007-01-15 00:13:01 as along with 1 person megraw
	Transcriptional Regulation by Competing Transcription Factor Modules [My Copy] PLoS Computational Biology, Vol. 2, No. 12. (1 December 2006), e164. by Rutger Hermsen, Sander Tans, Ten posted to gene module network regulation by wnpx on 2007-01-06 18:22:41 as along with 3 people nirfriedman zwang nklee
	Rules for modeling signal-transduction systems. [My Copy] Sci STKE, Vol. 2006, No. 344. (17 July 2006) by W. S. Hlavacek, J. R. Faeder, M. L. Blinov, R. G. Posner, M. Hucka, W. Fontana posted to network signal by wnpx on 2006-12-08 15:41:17 as along with 5 people aheilbut tonamswish jjray eukfn josepe
	Methods to reveal domain networks [My Copy] Drug Discovery Today, Vol. 10, No. 16. (15 August 2005), pp. 1111-1117. by Elena Santonico, Luisa Castagnoli, Gianni Cesareni posted to network by wnpx on 2006-12-08 15:40:57 as along with 3 people and 1 group eukfn cjeans gulkur Bioinformatics
	Link prediction in relational data [My Copy] (2004) by B. Taskar, M. Wong, P. Abbeel, D. Koller posted to markov network prm probabilistic by wnpx on 2006-12-07 19:47:19 as along with 2 people donade roys
	BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network. [My Copy] Bioinformatics (27 September 2006) by Xiaohui Chen, Ming Chen, Kaida Ning posted to bayesian bayesnet gene network r regulation by wnpx on 2006-11-18 18:09:29 as along with 6 people guhjy frohike jhatrimatri shigepong ramakris waszak
	IntNetDB v1.0: An integrated protein-protein interaction network database generated by a probabilistic model [My Copy] BMC Bioinformatics, Vol. 7 (18 November 2006), 508. by Kai Xia, Dong Dong, Jing-Dong J. Han posted to interaction network probabilistic protein by wnpx on 2006-11-18 18:08:37 as along with 3 people cdallett nedwards maralena
	Visual setup of logical models of signaling and regulatory networks with ProMoT [My Copy] BMC Bioinformatics, Vol. 7 (17 November 2006), 506. by Julio Saez-Rodriguez, Sebastian Mirschel, Rebecca Hemenway, Steffen Klamt, Ernst D. Gilles, Martin Ginkel posted to boolean modeling network now by wnpx on 2006-11-18 18:05:57 as along with 1 person dquest
	Being Bayesian About Network Structure. A Bayesian Approach to Structure Discovery in Bayesian Networks [My Copy] Machine Learning, Vol. V50, No. 1. (1 January 2003), pp. 95-125. by Nir Friedman, Daphne Koller posted to bayesian network structure by wnpx on 2006-11-17 06:16:03 as along with 5 people and 1 group garyfeng Borelli chechetka quianominorleo naegele ReadingLab
	Comparing gene expression networks in a multi-dimensional space to extract similarities and differences between organisms. [My Copy] Bioinformatics (9 March 2006) by Gaëlle Lelandais, Pierre Vincens, Anne Badel-Chagnon, Stéphane Vialette, Claude Jacq, Serge Hazout posted to expression gene network by wnpx on 2006-09-02 11:30:36 as along with 1 person and 1 group dpollard EisenLab
	An effective structure learning method for constructing gene networks. [My Copy] Bioinformatics, Vol. 22, No. 11. (1 June 2006), pp. 1367-1374. by X. W. Chen, G. Anantha, X. Wang posted to bayesian gene learning network structure by wnpx on 2006-09-02 11:29:44 as along with 1 person ramakris
	Inferring network mechanisms: the Drosophila melanogaster protein interaction network. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 9. (1 March 2005), pp. 3192-3197. by M. Middendorf, E. Ziv, C. H. Wiggins posted to inference interaction network protein by wnpx on 2006-08-24 18:46:19 as along with 3 people and 1 group lfriedl jaspervoskuilen iris_2001 kdl
	Bridging structural biology and genomics: assessing protein interaction data with known complexes [My Copy] Trends in Genetics, Vol. 18, No. 10. (1 October 2002), pp. 529-536. by A. Edwards posted to bayesian complex dt interaction network protein toread by wnpx on 2006-08-24 18:45:59 as along with 6 people and 1 group flbarroso ubcg08l lfriedl reidy ruvido wilbur kdl
	Local Learning in Probabilistic Networks with Hidden Variables [My Copy] In IJCAI (1995), pp. 1146-1152. by Stuart J. Russell, John Binder, Daphne Koller, Keiji Kanazawa posted to learning network probabilistic by wnpx on 2006-08-24 18:37:38 as along with 3 people anon_pl wlyu2001 luispedro
	Towards an integrated protein-protein interaction network: a relational markov network approach. [My Copy] J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 145-164. by A. Jaimovich, G. Elidan, H. Margalit, N. Friedman posted to markov network prediction probabilistic protein proteininteraction by wnpx on 2006-08-24 18:36:29 as along with 5 people and 1 group lfriedl nirfriedman koller rsantana iris_2001 kdl
	Interactome networks: the state of the science. [My Copy] Genome Biol, Vol. 7, No. 1. (2006) by G. J. Warner, Y. A. Adeleye, T. Ideker posted to interactome network by wnpx on 2006-08-24 18:29:05 as along with 1 person koller
	Extracting Gene Networks for Low-Dose Radiation Using Graph Theoretical Algorithms [My Copy] PLoS Computational Biology, Vol. 2, No. 7. (1 July 2006), e89. by Brynn H. Voy, Jon A. Scharff, Andy D. Perkins, et al.Arnold M. Saxton, Bhavesh Borate, Elissa J. Chesler, Lisa K. Branstetter, Michael A. Langston posted to gene graphtheory network by wnpx on 2006-08-05 22:26:36 as along with 2 people jiny jfr
	N-body decomposition of bipartite networks [My Copy] (17 Oct 2005) by R. Lambiotte, M. Ausloos posted to network by wnpx on 2006-07-30 17:04:36 as along with 2 people anon_pl abonchen
	Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data. [My Copy] Bioinformatics, Vol. 21 Suppl 2 (1 September 2005) by N. Nariai, Y. Tamada, S. Imoto, S. Miyano posted to network protein proteininteraction regulation yeast by wnpx on 2006-07-30 16:52:50 as along with 2 people noano koller
	Efficient algorithms for detecting signaling pathways in protein interaction networks. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 13, No. 2. (March 2006), pp. 133-144. by J. Scott, T. Ideker, R. M. Karp, R. Sharan posted to interaction network pathway protein signaling by wnpx on 2006-07-30 16:47:42 as along with 4 people gurkanbebek koller iris_2001 carlk
	A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules [My Copy] Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255. by Joshua M. Stuart, Eran Segal, Daphne Koller, Stuart K. Kim posted to gene module network by wnpx on 2006-07-30 16:45:34 as along with 24 people and 7 groups sficklin roys thegoose2 cswinburne carlk saket pengchy nolodie jeremymiller tharris dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade opheliav neveaire macle raylim lp2 karfunkel vertikalist C. elegans / WormBase kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience BTS-PT-AS-CS

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