wnpx's toread [49 articles] Export

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	From in vivo to in silico biology and back [My Copy] Nature, Vol. 443, No. 7111. (05 October 2006), pp. 527-533. by Barbara Di Ventura, Caroline Lemerle, Konstantinos Michalodimitrakis, Luis Serrano posted to sysbio toread by wnpx on 2007-07-27 05:31:05 as along with 8 people remoteFuture VGreiff bertelsen aalibes mmt dbikard jrbanga vietanh0
	Probabilistic modeling and machine learning in structural and systems biology. [My Copy] BMC Bioinformatics, Vol. 8 Suppl 2 (2007) by S. Kaski, J. Rousu, E. Ukkonen posted to dt machinelearning modeling new probabilistic sysbio toread by wnpx on 2007-06-28 09:47:27 as along with 1 person shigepong
	Ten top reasons for systems biology to get into model-driven engineering [My Copy] In GaMMa '06: Proceedings of the 2006 international workshop on Global integrated model management (2006), pp. 55-58. by Magali R. Rouquié, Debora S. da Rosa posted to dt modeldriven sysbio toread by wnpx on 2007-06-11 07:19:20 as along with 2 people and 2 groups leemond31 carmaus dIEMoSIRIS MoSi-Rostock
	Systems biology standards--the community speaks. [My Copy] Nature biotechnology, Vol. 25, No. 4. (01 April 2007), pp. 390-391. by Edda Klipp, Wolfram Liebermeister, Anselm Helbig, Axel Kowald, Jörg Schaber posted to sysbio toread by wnpx on 2007-04-20 09:45:40 as along with 3 people jonathancooper mtaschuk mhucka
	Integrating scientific cultures [My Copy] Mol Syst Biol, Vol. 3 (17 April 2007) by Trey Ideker, Vineet Bafna, Thomas Lemberger posted to sysbio toread by wnpx on 2007-04-20 09:45:20 as along with 3 people and 2 groups dchughes zwang rayoulike G4ID Genetics-of-Gambling
	Bayesian methods in bioinformatics and computational systems biology. [My Copy] Briefings in bioinformatics, Vol. 8, No. 2. (12 March 2007), pp. 109-116. by Darren J. Wilkinson posted to bayesian sysbio toread by wnpx on 2007-04-14 20:32:01 as along with 22 people and 1 group daforerog shikin jb44 gamberina tonamswish red446 svozil VGreiff guhjy Borelli jfr neveaire zwang bertelsen cabbagezs julesyoo blobbybirdman hpaces vietanh0 waszak i-stevenson quianominorleo Bioinformatics
	Probabilistic independence networks for hidden Markov probability models [My Copy] (1996) by P. Smyth, D. Heckerman, M. Jordan posted to avod bayesian dt hmm toread by wnpx on 2007-04-12 20:33:15 as along with 1 person and 1 group garyfeng ReadingLab
	Bioengineering and Systems Biology [My Copy] Annals of Biomedical Engineering, Vol. 34, No. 2. (February 2006), pp. 257-264. by Trey Ideker, L. Winslow, A. Lauffenburger posted to sysbio toread by wnpx on 2007-04-07 11:08:46 as along with 2 people and 1 group Badger cdppublications CDP
	'On-the-fly' or 'generate-first' modeling? [My Copy] Nature Biotechnology, Vol. 23, No. 11., pp. 1344-1345. by Michael L. Blinov, James R. Faeder, Jin Yang, Byron Goldstein, William S. Hlavacek posted to modeling sysbio toread by wnpx on 2007-04-01 10:25:41 as
	Systems biology. Tracing life's circuitry. [My Copy] Science, Vol. 302, No. 5651. (5 December 2003), pp. 1646-1649. by E. Pennisi posted to dt od sysbio toread by wnpx on 2007-04-01 10:23:50 as along with 2 people Scis0000002 alexg
	The Bayesian revolution in genetics. [My Copy] Nature reviews. Genetics, Vol. 5, No. 4. (April 2004), pp. 251-261. by M. A. Beaumont, B. Rannala posted to bayesian dt paywall toread by wnpx on 2007-03-25 19:28:00 as along with 2 people daforerog oilcan
	Predicting protein functions from redundancies in large-scale protein interaction networks. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 22. (28 October 2003), pp. 12579-12583. by M. P. Samanta, S. Liang posted to interaction protein toread by wnpx on 2007-03-25 19:27:07 as along with 2 people jiny carlk
	A protein interaction network for pluripotency of embryonic stem cells [My Copy] Nature by Jianlong Wang, Sridhar Rao, Jianlin Chu, et al.Xiaohua Shen, Dana N. Levasseur, Thorold W. Theunissen, Stuart H. Orkin posted to cell interaction protein stem toread by wnpx on 2007-03-22 21:46:40 as along with 7 people and 2 groups tonamswish kentsis marcius yeastyboy Ao_Li2007 iris_2001 tdmckee BioinfoCIPF SGU-CIPF
	Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data [My Copy] Theoretical Biology and Medical Modelling, Vol. 3 (15 December 2006), 42. by Wolfram Liebermeister, Edda Klipp posted to metabolic toread by wnpx on 2007-03-22 21:45:00 as along with 5 people and 1 group lflorez guhjy raiyar fishtank jrbanga steinmetzlab
	Probabilistic inference of molecular networks from noisy data sources [My Copy] Bioinformatics, Vol. 20, No. 8. (22 May 2004), pp. 1205-1213. by Ivan Iossifov, Michael Krauthammer, Carol Friedman, et al.Vasileios Hatzivassiloglou, Joel S. Bader, Kevin P. White, Andrey Rzhetsky posted to bayesian dt inference od toread by wnpx on 2007-03-22 21:44:29 as along with 2 people shashank_hi iris_2001
	Building with a scaffold: emerging strategies for high- to low-level cellular modeling. [My Copy] Trends Biotechnol, Vol. 21, No. 6. (June 2003), pp. 255-262. by T. Ideker, D. Lauffenburger posted to modeling sysbio toread by wnpx on 2007-03-21 19:15:59 as along with 2 people and 2 groups mhucka roland_ewald dIEMoSIRIS MoSi-Rostock
	Combining biological networks to predict genetic interactions. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 44. (2 November 2004), pp. 15682-15687. by S. L. Wong, L. V. Zhang, A. H. Tong, et al.Z. Li, D. S. Goldberg, O. D. King, G. Lesage, M. Vidal, B. Andrews, H. Bussey, C. Boone, F. P. Roth posted to dataintegration toread by wnpx on 2007-03-18 22:15:09 as along with 7 people and 3 groups dbk lfriedl balajis reidy eukfn patrycja_missiuro ksiek streptomyces dbk-lab kdl
	Computational approach to systems biology: from fraction to integration and beyond [My Copy] NanoBioscience, IEEE Transactions on, Vol. 3, No. 3. (2004), pp. 144-152. by P. K. Dhar, Hao Zhu, S. K. Mishra posted to dataintegration dt od sysbio toread by wnpx on 2007-03-18 22:08:15 as along with 3 people and 1 group eweaver biosv tlse65 smac
	Integrating 'omic' information: a bridge between genomics and systems biology. [My Copy] Trends Genet, Vol. 19, No. 10. (October 2003), pp. 551-560. by H. Ge, A. J. Walhout, M. Vidal posted to dataintegration dt sysbio toread by wnpx on 2007-03-18 22:07:17 as along with 7 people and 2 groups thegoose2 tharris lfriedl biosv reidy grahamc sanchezbuelna C. elegans / WormBase kdl
	Search for organising principles: understanding in systems biology [My Copy] Systems Biology, IEE, Vol. 1, No. 1. (2004), pp. 19-27. by M. D. Mesarovic, S. N. Sreenath, J. D. Keene posted to dt sysbio toread by wnpx on 2007-03-18 22:04:50 as along with 2 people chihchun_chen biosv
	Systems biology: in the broadest sense of the word [My Copy] Environmental Microbiology, Vol. 7, No. 4. (April 2005), pp. 482-483. by W. Ussery, Jensen L. Juhl posted to dt sysbio toread by wnpx on 2007-03-18 22:03:13 as along with 2 people biosv larsjuhljensen
	Systems biology: its practice and challenges. [My Copy] Cell, Vol. 121, No. 4. (20 May 2005), pp. 511-513. by Alan Aderem posted to dt sysbio toread by wnpx on 2007-03-18 22:02:41 as along with 4 people and 2 groups Badger LeightonP biosv carmaus dIEMoSIRIS MoSi-Rostock
	SYSTEMS BIOLOGY: The variable cell [My Copy] Nature Reviews Molecular Cell Biology, Vol. 6, No. 11. (01 November 2005), pp. 822-822. by Arianne Heinrichs posted to dt sysbio toread by wnpx on 2007-03-18 22:02:05 as along with 1 person biosv
	Systems biology, integrative biology, predictive biology. [My Copy] Cell, Vol. 121, No. 4. (20 May 2005), pp. 505-506. by Edison T. Liu posted to dt sysbio toread by wnpx on 2007-03-18 21:59:53 as along with 4 people lpfernandes bertelsen LeightonP biosv
	Systems Biology: Will it work? [My Copy] Systems Biology, IEE, Vol. 2, No. 1. (2005), pp. 1-4. by C. Sansom posted to dt sysbio toread by wnpx on 2007-03-18 21:59:28 as along with 2 people chihchun_chen biosv
	Is there biological research beyond Systems Biology? A comparative analysis of terms [My Copy] Molecular Systems Biology, Vol. 1, No. 1. (25 May 2005), pp. msb4100016-E1-msb4100016-E2. by Peer Bork posted to dt sysbio toread by wnpx on 2007-03-18 21:59:01 as along with 1 person biosv
	Systems interface biology [My Copy] Journal of The Royal Society Interface, Vol. 3, No. 10. (22 October 2006), pp. 603-616. by Francis J. Doyle, Jörg Stelling posted to sysbio toread by wnpx on 2007-03-14 12:55:05 as along with 3 people abhishek_tiwari jrbanga karfunkel
	Supervised graph inference [My Copy] In Advances in Neural Information Processing Systems (2005), pp. 1433-1440. by Jean-Philippe Vert, Yoshihiro Yamanishi posted to graph inference machinelearning supervised toread by wnpx on 2007-03-08 19:20:29 as along with 1 person and 1 group lfriedl kdl
	A probability-based approach for high-throughput protein phosphorylation analysis and site localization [My Copy] Nature Biotechnology, Vol. 24, No. 10. (10 September 2006), pp. 1285-1292. by Sean A. Beausoleil, Judit Villen, Scott A. Gerber, John Rush, Steven P. Gygi posted to bayesian dt protein toread by wnpx on 2007-02-11 17:46:06 as along with 6 people saradtc alexgeorgiou guhjy csardas Ao_Li2007 Thomasah
	Whole-istic Biology [My Copy] Science, Vol. 295, No. 5560. (1 March 2002), 1661. by Lisa Chong, Bryan L. Ray posted to background sysbio toread by wnpx on 2007-02-05 18:46:40 as along with 1 person margaritis
	Meeting report: the future and limits of systems biology. [My Copy] Sci STKE, Vol. 2005, No. 278. (5 April 2005) by E. Werner posted to toread sysbio by wnpx on 2007-02-05 18:30:42 as along with 1 person BioGeek
	An empirical Bayes approach to inferring large-scale gene association networks. [My Copy] Bioinformatics, Vol. 21, No. 6. (March 2005), pp. 754-764. by J. Schäfer, K. Strimmer posted to bayesian dt ggm toread by wnpx on 2007-02-05 18:07:28 as along with 5 people and 1 group eldan gangli Ao_Li2007 StatAnika tmmurali tulip
	Reconstructing gene-regulatory networks from time series, knock-out data, and prior knowledge [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007), 11. by Florian Geier, Jens Timmer, Christian Fleck posted to toread inference bayesian by wnpx on 2007-02-03 19:14:18 as along with 6 people mjoach edwardmorrissey guhjy tuck Ao_Li2007 ptrobajo
	SYSTEMS BIOLOGY: Life's Complexity Pyramid [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 763-764. by Zoltan N. Oltvai, Albert-Laszlo Barabasi posted to dt sysbio toread by wnpx on 2007-02-01 17:20:00 as along with 13 people and 6 groups joschaschmiedt navigators tomhebbron Scis0000002 Diego_Prada agomez eldan yas sameetmehta jwdietrich mattjb franklin Ema MathBio Cybernetics ComplexAdaptiveSystems DSTO-CAS Biomedical_Cybernetics AQUA-FONTIS-Study
	Toward large-scale modeling of the microbial cell for computer simulation. [My Copy] J Biotechnol, Vol. 113, No. 1-3. (30 September 2004), pp. 281-294. by N. Ishii, M. Robert, Y. Nakayama, A. Kanai, M. Tomita posted to toread simulation modeling dt by wnpx on 2007-01-21 22:06:13 as along with 9 people and 3 groups ynaito csanford eldan Doug cottrell livingthingdan josepe fishtank roland_ewald livingthing dIEMoSIRIS MoSi-Rostock
	A formal language for computational systems biology. [My Copy] OMICS, Vol. 8, No. 4. (2004), pp. 370-380. by D. D. Errampalli, C. Priami, P. Quaglia posted to toread sysbio dt by wnpx on 2007-01-21 22:05:07 as along with 3 people eldan Doug josepe
	Computational modelling, explicit mathematical treatments, and scientific explanation [My Copy] In Artificial Life X : Proceedings of the Tenth International Conference on the Simulation and Synthesis of Living Systems (1 August 2006), pp. 520-526. by John Bryden, Jason Noble edited by Luis M. Rocha, Larry S. Yaeger, Mark A. Bedau, Dario Floreano, Robert L. Goldstone, Alessandro Vespignani posted to toread modeling by wnpx on 2007-01-21 22:02:05 as along with 1 person eldan
	Evolution, Interactions, and Biological Networks [My Copy] PLoS Biology, Vol. 5, No. 1. (1 January 2007), e11. by Joshua S. Weitz, Philip N. Benfey, Ned S. Wingreen posted to toread network by wnpx on 2007-01-21 22:00:15 as along with 17 people and 1 group Borelli wangbo anphony eldan aalibes cmmorel balajis cerkut jhatrimatri josepe timothee srfairclough hmk bootsy Ema bpcusack skumagai contact-id
	The nature of systems biology. [My Copy] Trends in microbiology, Vol. 15, No. 1. (17 January 2007), pp. 45-50. by Frank J. Bruggeman, Hans V. Westerhoff posted to dt sysbio toread by wnpx on 2007-01-21 21:17:03 as along with 13 people and 5 groups schwartzjmc babakap alorena eldan jwm jmeppley rabu aswin kengg dolhuis livingthingdan mkrajnak ptpases Radiation_Damage Stressosome SNE livingthing Plantandetc
	Toward computational systems biology. [My Copy] Cell Biochem Biophys, Vol. 40, No. 2. (2004), pp. 167-184. by L. You posted to toread sysbio by wnpx on 2007-01-14 22:57:46 as along with 3 people Scis0000002 eldan Doug
	Bridging structural biology and genomics: assessing protein interaction data with known complexes [My Copy] Trends in Genetics, Vol. 18, No. 10. (1 October 2002), pp. 529-536. by A. Edwards posted to bayesian complex dt interaction network protein toread by wnpx on 2006-08-24 18:45:59 as along with 6 people and 1 group flbarroso ubcg08l lfriedl reidy ruvido wilbur kdl
	The Meaning of Systems Biology [My Copy] Cell, Vol. 121, No. 4. (20 May 2005), pp. 503-504. by M. Kirschner posted to background-bio dt sec-background-sysbio sysbio systemsbiology toread by wnpx on 2006-07-20 15:56:42 as along with 5 people bertelsen ynaito LeightonP biosv lpfernandes
	YeastHub: a semantic web use case for integrating data in the life sciences domain. [My Copy] Bioinformatics, Vol. 21 Suppl 1 (1 June 2005) by K. H. Cheung, K. Y. Yip, A. Smith, R. Deknikker, A. Masiar, M. Gerstein posted to dataintegration dt rdf semanticweb service toread web by wnpx on 2006-07-04 23:28:02 as along with 11 people and 3 groups druvus gorlitsky wcrosbie Schmidtc benny dullhunk caporaso mbeautru agileproteomics pablomendes guhjy Wikipedia CoP_CMS biomedical-nlp
	Bayesian Network Analysis of Signaling Networks: A Primer [My Copy] Sci. STKE, Vol. 2005, No. 281. (26 April 2005), pl4. by D. Pe'er posted to bayesian bayesnet inference network signaling toread by wnpx on 2006-01-30 16:32:36 as along with 8 people abhishek_tiwari frohike ptrobajo saman_vp tmmurali Borelli ryang jhatrimatri
	Handbook of Graph Grammars and Computing by Graph Transformation: Applications, Languages and Tools [My Copy] by H. Ehrig, G. Engels, H. J. Kreowski posted to book graphrewriting lib-hut loan toread by wnpx on 2006-01-29 19:27:19 as along with 3 people and 2 groups RWeiss dlobo AbnerCYH GEB CSBBGraphTheory
	A data integration methodology for systems biology. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 48. (29 November 2005), pp. 17296-17301. by D. Hwang, A. G. Rust, S. Ramsey, et al.J. J. Smith, D. M. Leslie, A. D. Weston, P. de Atauri, J. D. Aitchison, L. Hood, A. F. Siegel, H. Bolouri posted to biology dataintegration sysbio systemsbiology toread by wnpx on 2006-01-21 20:13:43 as along with 21 people and 4 groups daforerog shikin jimineep ggallone brian tmmurali dragonrez okarsligil jfr lfriedl Schmidtc eweaver biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor nedwards athleem Jarman Lab kdl Bioinformatics JJJ
	Learning Probabilistic Relational Models [My Copy] Lecture Notes in Computer Science, Vol. 1864 (2000), pp. 322-??. by Lise Getoor posted to learning prm toread by wnpx on 2005-12-30 17:22:45 as along with 3 people and 1 group bpacker krisl paulomagalhaes vision-ng
	Systems modeling: a pathway to drug discovery. [My Copy] Curr Opin Chem Biol, Vol. 9, No. 4. (August 2005), pp. 400-406. by P. Rajasethupathy, S. J. Vayttaden, U. S. Bhalla posted to dt general modeling sysbio toread by wnpx on 2005-12-30 15:03:10 as along with 4 people snuppepuppan kuhn mmt jdiggans
	SYSTEMS BIOLOGY: Less Is More in Modeling Large Genetic Networks [My Copy] Science, Vol. 310, No. 5747. (21 October 2005), pp. 449-451. by Stefan Bornholdt posted to dt general modeling networks sysbio toread by wnpx on 2005-12-30 14:52:02 as along with 7 people and 1 group jmenche snuppepuppan eldan jmeppley balajis biosv fishtank Bioinformatics

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