wowalz's motif-discovery [at least 200 articles] Export

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	Hybrid Gibbs-sampling algorithm for challenging motif discovery: GibbsDST. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 17, No. 2. (2006), pp. 3-13. by K. Shida posted to motif-discovery by wowalz on 2009-07-08 18:39:12 as
	FR3D: finding local and composite recurrent structural motifs in RNA 3D structures. [My Copy] Journal of mathematical biology, Vol. 56, No. 1-2. (January 2008), pp. 215-252. by M. Sarver, C. L. Zirbel, J. Stombaugh, A. Mokdad, N. B. Leontis posted to motif-discovery unsure by wowalz on 2009-07-08 18:37:54 as along with 2 people reyez jarasch
	An efficient, versatile and scalable pattern growth approach to mine frequent patterns in unaligned protein sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 6. (15 March 2007), pp. 687-693. by K. Ye, W. A. Kosters, A. P. Ijzerman posted to motif-discovery unsure by wowalz on 2009-07-08 18:33:17 as along with 2 people thaliana birzele
	A sequential method for discovering probabilistic motifs in proteins. [My Copy] Methods of information in medicine, Vol. 43, No. 1. (2004), pp. 9-12. by K. Blekas, D. I. Fotiadis, A. Likas posted to motif-discovery by wowalz on 2009-07-08 18:32:20 as
	Finding subtle motifs by branching from sample strings. [My Copy] Bioinformatics (Oxford, England), Vol. 19 Suppl 2 (October 2003) by A. Price, S. Ramabhadran, P. A. Pevzner posted to motif-discovery by wowalz on 2009-07-08 18:03:32 as along with 2 people dquest Evangelia
	iGibbs: improving Gibbs motif sampler for proteins by sequence clustering and iterative pattern sampling. [My Copy] Proteins, Vol. 66, No. 3. (15 February 2007), pp. 671-681. by S. Kim, Z. Wang, M. Dalkilic posted to cluster motif-discovery by wowalz on 2009-07-08 18:02:51 as along with 1 person nklee
	Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 8. (15 April 2006), pp. 989-996. by H. Li, J. Li, L. Wong posted to motif-discovery unsure by wowalz on 2009-07-08 18:01:39 as along with 1 person and 2 groups bsmagic Bioinformatics bioinplant
	RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences. [My Copy] Nucleic acids research, Vol. 32, No. 10. (2004), pp. 3258-3269. by G. Pavesi, G. Mauri, M. Stefani, G. Pesole posted to motif-discovery by wowalz on 2009-07-08 18:00:11 as along with 4 people Glires evaf eckart_bindewald dquest
	A structure-based flexible search method for motifs in RNA. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 14, No. 7. (September 2007), pp. 908-926. by I. Veksler-Lublinsky, M. Ziv-Ukelson, D. Barash, K. Kedem posted to motif-discovery by wowalz on 2009-07-08 17:59:23 as along with 1 person eskay
	RNAMotif, an RNA secondary structure definition and search algorithm [My Copy] Nucl. Acids Res., Vol. 29, No. 22. (15 November 2001), pp. 4724-4735. by Thomas J. Macke, David J. Ecker, Robin R. Gutell, Daniel Gautheret, David A. Case, Rangarajan Sampath posted to motif-discovery by wowalz on 2009-07-08 17:56:33 as along with 2 people evaf dquest
	Searching for statistically significant regulatory modules. [My Copy] Bioinformatics (Oxford, England), Vol. 19 Suppl 2 (October 2003) by T. L. Bailey, W. S. Noble posted to motif-discovery by wowalz on 2009-07-08 17:55:15 as along with 4 people and 2 groups maximilianh indigoviolet stajich xili03 EisenLab Mycology
	A string pattern regression algorithm and its application to pattern discovery in long introns. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 13 (2002), pp. 3-11. by H. Bannai, S. Inenaga, A. Shinohara, M. Takeda, S. Miyano posted to motif-discovery unsure by wowalz on 2009-07-08 17:54:10 as
	Finding motifs with insufficient number of strong binding sites. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 12, No. 6. (g 2005), pp. 686-701. by H. C. Leung, F. Y. Chin, S. M. Yiu, R. Rosenfeld, W. W. Tsang posted to motif-discovery by wowalz on 2009-07-08 17:52:35 as along with 1 person dquest
	Finding linear motif pairs from protein interaction networks: a probabilistic approach. [My Copy] Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference, Vol. 6 (2007), pp. 111-119. by H. C. Leung, M. H. Siu, S. M. Yiu, F. Y. Chin, K. W. Sung posted to motif-discovery by wowalz on 2009-07-08 17:50:59 as
	Finding motifs from all sequences with and without binding sites. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 18. (15 September 2006), pp. 2217-2223. by Henry C. Leung, Francis Y. Chin posted to motif-discovery by wowalz on 2009-07-08 17:48:21 as along with 4 people maximilianh eckart_bindewald dquest nuin
	ARCS-Motif: discovering correlated motifs from unaligned biological sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 2. (15 January 2009), pp. 183-189. by Shijie Zhang, Wei Su, Jiong Yang posted to motif-discovery unsure by wowalz on 2009-07-08 17:46:44 as along with 2 people djkt nuin
	Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm. [My Copy] Bioinformatics (Oxford, England), Vol. 14, No. 1. (1 February 1998), pp. 55-67. by I. Rigoutsos, A. Floratos posted to motif-discovery by wowalz on 2009-07-08 17:42:34 as along with 6 people and 1 group stharward windman83 thaliana okarsligil dquest heliopais Bioinformatics
	On counting position weight matrix matches in a sequence, with application to discriminative motif finding. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 14. (15 July 2006) by S. Sinha posted to motif-discovery by wowalz on 2009-07-08 17:39:18 as along with 3 people eckart_bindewald samal xili03
	[duplicate] GADEM: a genetic algorithm guided formation of spaced dyads coupled with an EM algorithm for motif discovery. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 2. (February 2009), pp. 317-329. by L. Li posted to unsure nolocalpdf motif-discovery evo-alg by wowalz on 2009-07-08 17:32:58 as
	GADEM: a genetic algorithm guided formation of spaced dyads coupled with an EM algorithm for motif discovery. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 2. (February 2009), pp. 317-329. by L. Li posted to evo-alg motif-discovery nolocalpdf unsure by wowalz on 2009-07-08 17:24:32 as along with 1 person nklee
	Counting of oligomers in sequences generated by markov chains for DNA motif discovery. [My Copy] Journal of bioinformatics and computational biology, Vol. 7, No. 1. (February 2009), pp. 39-54. by G. Shan, W. M. Zheng posted to markov motif-discovery by wowalz on 2009-07-08 17:14:23 as along with 1 person maximilianh
	Discriminative motif discovery in DNA and protein sequences using the DEME algorithm. [My Copy] BMC bioinformatics, Vol. 8, No. 1. (2007) by E. Redhead, T. L. Bailey posted to motif-discovery by wowalz on 2009-07-08 17:12:41 as along with 7 people and 1 group tmarscha dpollard cjeans nklee niallhaslam maximilianh idonaldson EisenLab
	SMOTIF: efficient structured pattern and profile motif search. [My Copy] Algorithms for molecular biology : AMB, Vol. 1 (21 November 2006), 22. by Yongqiang Zhang, Mohammed J. Zaki posted to motif-discovery by wowalz on 2009-07-08 17:11:18 as along with 2 people beete kmdaily
	Compound poisson approximation of the number of occurrences of a position frequency matrix (PFM) on both strands. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 15, No. 6. (g 2008), pp. 547-564. by U. J. Pape, S. Rahmann, F. Sun, M. Vingron posted to motif-discovery by wowalz on 2009-07-08 17:09:30 as along with 1 person nklee
	Computing the P-value of the information content from an alignment of multiple sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 21 Suppl 1 (June 2005) by N. Nagarajan, N. Jones, U. Keich posted to motif-discovery unsure by wowalz on 2009-07-08 17:00:22 as along with 3 people treangen rabio nedwards
	Finding exact optimal motifs in matrix representation by partitioning. [My Copy] Bioinformatics (Oxford, England), Vol. 21 Suppl 2 (1 September 2005) by H. C. Leung, F. Y. Chin posted to motif-discovery unsure by wowalz on 2009-07-08 16:59:10 as along with 1 person dquest
	Efficient exact motif discovery [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i356-364. by Tobias Marschall, Sven Rahmann posted to motif-discovery by wowalz on 2009-07-08 16:57:53 as along with 5 people bsamal dquest nuin idonaldson maximilianh
	Identifying short motifs by means of extreme value analysis [My Copy] EPL (Europhysics Letters), Vol. 84, No. 1. (2008), 18001. by D. Bianchi, B. Tirozzi posted to motif-discovery by wowalz on 2009-06-12 15:04:34 as
	Pattern Discovery from Biosequences [My Copy] (2002) by Jaak Vilo, Jaak Vilo, Jaak Vilo posted to motif-discovery by wowalz on 2009-05-06 15:56:35 as
	Weeder Web: a Web-Based Tool for the Discovery of Transcription Factor Binding Sites [My Copy] by Giulio Pavesi, Giancarlo Mauri, Graziano Pesole posted to motif-discovery weeder by wowalz on 2009-05-06 15:45:22 as
	Pattern Detection and Discovery [My Copy] Pattern Detection and Discovery (2002), pp. 161-173. by David Hand posted to motif-discovery unsure by wowalz on 2009-05-06 15:44:25 as
	Pattern Discovery in Sequences under a Markov Assumption [My Copy] (2002) by Darya Chudova, Padhraic Smyth posted to markov motif-discovery by wowalz on 2009-05-06 15:42:04 as
	iMoMi (interactive Motif Mining)- a database and utilities to assist the discovery of new regulatory patterns [My Copy] by Nicolas Pons, Jean-Michel Batto, Dusko S. Ehrlich, Pierre Renault posted to motif-discovery by wowalz on 2009-05-06 15:40:32 as
	A Bayesian Hidden Markov Model for Motif Discovery Through Joint Modeling of Genomic Sequence and ChIP-Chip Data [My Copy] Biometrics, Vol. 9999, No. 9999. (2009) by Jonathan A. L. Gelfond, Mayetri Gupta, Joseph G. Ibrahim posted to bayesian motif-discovery unsure by wowalz on 2009-05-06 15:39:21 as along with 2 people maximilianh idonaldson
	Protein Sequence Motif Discovery on Distributed Supercomputer [My Copy] Advances in Grid and Pervasive Computing (2008), pp. 232-243. by Santan Challa, Parimala Thulasiraman posted to motif-discovery by wowalz on 2009-05-06 15:35:32 as
	Graphical approach for motif recognition in DNA sequences [My Copy] Computational Intelligence in Bioinformatics and Computational Biology, 2004. CIBCB '04. Proceedings of the 2004 IEEE Symposium on In Computational Intelligence in Bioinformatics and Computational Biology, 2004. CIBCB '04. Proceedings of the 2004 IEEE Symposium on (2004), pp. 147-152. by X. Yang, J. C. Rajapakse posted to motif-discovery by wowalz on 2009-05-06 15:33:03 as
	fdrMotif: identifying cis-elements by an EM algorithm coupled with false discovery rate control [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 629-636. by Leping Li, Robert L. Bass, Yu Liang posted to motif-discovery unsure by wowalz on 2009-05-06 15:28:55 as along with 6 people bsamal GustavoLacerda maximilianh idonaldson csdhwang isimpson
	MotifVoter: a novel ensemble method for fine-grained integration of generic motif finders [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2288-2295. by Edward Wijaya, Siu-Ming Yiu, Ngo T. Son, Rajaraman Kanagasabai, Wing-Kin Sung posted to motif-discovery unsure by wowalz on 2009-05-06 15:28:01 as along with 6 people bsamal druvus nuin chad_davis maximilianh idonaldson
	MotifScorer: using a compendium of microarrays to identify regulatory motifs [My Copy] Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 493-495. by Brilli, Matteo, Fani, Renato, Lio, Pietro posted to microarray motif-discovery by wowalz on 2009-05-06 15:26:00 as
	A profile-based deterministic sequential Monte Carlo algorithm for motif discovery. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 1. (1 January 2008), pp. 46-55. by K. C. Liang, X. Wang, D. Anastassiou posted to motif-discovery by wowalz on 2009-05-06 15:23:29 as along with 7 people and 1 group bsamal grahamc cjeans nklee maximilianh idonaldson isimpson Motif Discovery
	A correlated motif approach for finding short linear motifs from protein interaction networks. [My Copy] BMC bioinformatics, Vol. 7 (16 November 2006), 502. by S. H. Tan, W. Hugo, W. K. Sung, S. K. Ng posted to functional-network motif-discovery by wowalz on 2009-05-06 15:22:25 as along with 1 person Evangelia
	In silico discovery of transcription regulatory elements in Plasmodium falciparum [My Copy] BMC Genomics, Vol. 9 (07 February 2008), 70. by Jason A. Young, Jeffery R. Johnson, Chris Benner, et al.Frank S. Yan, Kaisheng Chen, Karine G. Le Roch, Yingyao Zhou, Elizabeth A. Winzeler posted to motif-discovery unsure by wowalz on 2009-05-06 15:21:32 as along with 1 person renatomilani
	Detecting Subdimensional Motifs: An Efficient Algorithm for Generalized Multivariate Pattern Discovery [My Copy] Data Mining, 2007. ICDM 2007. Seventh IEEE International Conference on In Data Mining, 2007. ICDM 2007. Seventh IEEE International Conference on (2007), pp. 601-606. by D. Minnen, C. Isbell, M. Essa, T. Starner posted to motif-discovery time-series unsure by wowalz on 2009-05-06 15:19:31 as along with 2 people pimmy cmoewes
	Motif discovery by monotone scores [My Copy] Discrete Applied Mathematics In Computational Molecular Biology Series, Issue V, Vol. 155, No. 6-7. (1 April 2007), pp. 695-706. by Alberto Apostolico, Cinzia Pizzi posted to motif-discovery nolocalpdf unsure by wowalz on 2009-05-06 15:17:40 as along with 1 person nklee
	Detection of generic spaced motifs using submotif pattern mining. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 12. (15 June 2007), pp. 1476-1485. by E. Wijaya, K. Rajaraman, S. M. Yiu, W. K. Sung posted to motif-discovery by wowalz on 2009-05-06 15:13:49 as along with 4 people fenghezi grahamc cjeans xili03
	Discovering Novel cis-Regulatory Motifs Using Functional Networks [My Copy] Genome Research, Vol. 13, No. 5. (1 May 2003), pp. 883-895. by Laurence M. Ettwiller, Johan Rung, Ewan Birney posted to functional-network motif-discovery by wowalz on 2009-05-06 15:12:21 as
	Pattern Finding Algorithm Based on Cloud Models [My Copy] Computational Intelligence (2006), pp. 1234-1239. by Yingjun Weng, Laide Shi posted to motif-discovery unsure by wowalz on 2009-05-06 15:01:29 as
	The motif tracking algorithm [My Copy] International Journal of Automation and Computing, Vol. 5, No. 1. (29 January 2008), pp. 32-44. by William Wilson, Phil Birkin, Uwe Aickelin posted to motif-discovery by wowalz on 2009-05-06 14:34:03 as
	Time Series Data Mining for Multimodal Bio-Signal Data [My Copy] International Journal of Computer Science and Network Security, Vol. 6, No. 10., pp. 1-9. by Masaki Aono, Yuske Sekiguchi, Yoshifumi Yasuda, Naoya Suzuki, Yohei Seki posted to motif-discovery time-series by wowalz on 2009-05-06 14:27:49 as
	Mining Approximate Motifs in Time Series [My Copy] Discovery Science (2006), pp. 89-101. by Pedro Ferreira, Paulo Azevedo, Cândida Silva, Rui Brito posted to motif-discovery time-series by wowalz on 2009-05-06 14:18:08 as

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motif-discovery	278
printout-exists	68
unsure	58
nolocalpdf	23
evo-alg	17
bayesian	7
peak-detection	7
ims	4
time-series	3
functional-network	2
markov	2
weeder	2
fuzzy	2
ea	2
motif	1
cluster	1
microarray	1
artificial-intelligence	1
no-pdf-ims	1
parallel	1

wowalz's motif-discovery [at least 200 articles] Export

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