xdeupi's library 423 articles Export

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	Conformational changes in G-protein-coupled receptors-the quest for functionally selective conformations is open. [My Copy] British journal of pharmacology, Vol. 153 Suppl 1 (3 March 2008) by C. Hoffmann, A. Zürn, M. Bünemann, M. J. Lohse posted to gpcrs review by xdeupi on 2009-05-26 08:41:58 as along with 2 people and 1 group anna_yershova Fritz neurolit
	Dynamic personalities of proteins [My Copy] Nature, Vol. 450, No. 7172. (12 December 2007), pp. 964-972. by Katherine Henzler-Wildman, Dorothee Kern posted to activation dynamics nmr review by xdeupi on 2009-03-12 12:06:38 as along with 18 people and 1 group saravan Diego_Prada viktor21614 ruvido barry pavanghatty chad_davis allmensch choonpeng rsantana cjeans sobolevnrm wilbur mijam kjell phoenixzxl higueruelo GeeSharpMinor baker-group
	Intrinsic motions along an enzymatic reaction trajectory. [My Copy] Nature, Vol. 450, No. 7171. (6 December 2007), pp. 838-844. by Katherine A. Henzler-Wildman, Vu Thai, Ming Lei, et al.Maria Ott, Magnus Wolf-Watz, Tim Fenn, Ed Pozharski, Mark A. Wilson, Gregory A. Petsko, Martin Karplus, Christian G. Hübner, Dorothee Kern posted to nmr energy_landscape dynamics activation by xdeupi on 2009-03-12 12:01:52 as along with 12 people and 1 group saravan ahmetbakan ubcg08l ruvido barry aqeel ebeutler cactus sobolevnrm paulschlesinger jlh64 yalexeev baker-group
	Functional dynamics of response regulators using NMR relaxation techniques. [My Copy] Methods in enzymology, Vol. 423 (2007), pp. 149-165. by A. K. Gardino, D. Kern posted to activation dynamics nmr by xdeupi on 2009-03-12 11:51:30 as
	Computational analysis of membrane proteins: genomic occurrence, structure prediction and helix interactions. [My Copy] Q Rev Biophys, Vol. 37, No. 2. (May 2004), pp. 121-146. by U. Lehnert, Y. Xia, T. E. Royce, et al.C. S. Goh, Y. Liu, A. Senes, H. Yu, Z. L. Zhang, D. M. Engelman, M. Gerstein posted to membrane_proteins review structure theory transmembrane by xdeupi on 2008-05-01 19:11:17 as along with 1 person thaliana
	FRET Study of Membrane Proteins: Simulation-Based Fitting for Analysis of Membrane Protein Embedment and Association [My Copy] Biophys. J., Vol. 91, No. 2. (15 July 2006), pp. 454-466. by Petr V. Nazarov, Rob B. Koehorst, Werner L. Vos, Vladimir V. Apanasovich, Marcus A. Hemminga posted to dimer fluorescence fret theory by xdeupi on 2008-04-02 13:50:03 as along with 1 person dimka
	The membrane protein universe: what's out there and why bother? [My Copy] Journal of Internal Medicine, Vol. 261, No. 6. (June 2007), pp. 543-557. by Von Heijne, G. posted to lmc_101 membrane_proteins review by xdeupi on 2007-06-11 10:28:32 as along with 2 people and 1 group guhjy andreasauerwein LabCompMed
	Linkage between the intramembrane H-bond network around aspartic acid 83 and the cytosolic environment of helix 8 in photoactivated rhodopsin. [My Copy] J Mol Biol, Vol. 366, No. 4. (2 March 2007), pp. 1129-1141. by N. Lehmann, U. Alexiev, K. Fahmy posted to activation d250 fluorescence npxxy rhodopsin by xdeupi on 2007-06-05 15:58:33 as along with 1 group LabCompMed
	Chromophore Channeling in the G-Protein Coupled Receptor Rhodopsin. [My Copy] J Am Chem Soc (15 May 2007) by Ting Wang, Yong Duan posted to activation agonist amber binding ligands md modeling rhodopsin by xdeupi on 2007-05-21 10:04:04 as along with 1 group LabCompMed
	Multiple signaling states of G-protein-coupled receptors. [My Copy] Pharmacol Rev, Vol. 57, No. 2. (June 2005), pp. 147-161. by D. M. Perez, S. S. Karnik posted to activation agonist gpcr pharmacology review rhodopsin switch by xdeupi on 2007-04-26 14:57:25 as along with 1 group LabCompMed
	Helix packing moments reveal diversity and conservation in membrane protein structure. [My Copy] J Mol Biol, Vol. 337, No. 3. (26 March 2004), pp. 713-729. by W. Liu, M. Eilers, A. B. Patel, S. O. Smith posted to gpcr helix membrane_proteins rhodopsin sequence ser structure transmembrane by xdeupi on 2007-04-26 13:49:38 as along with 1 group LabCompMed
	Systematic analysis of the entire second extracellular loop of the V1a vasopressin receptor: Key residues, conserved throughout a G-protein-coupled receptor family, identified. [My Copy] J Biol Chem (2 April 2007) by Matthew Conner, Stuart R R. Hawtin, John Simms, et al.Denise L L. Wootten, Zoe Lawson, Alex C C. Conner, Rosemary A A. Parslow, Mark Wheatley posted to activation amine binding ecl2 gpcr loops by xdeupi on 2007-04-10 18:59:06 as along with 1 group LabCompMed
	Setting up and running molecular dynamics simulations of membrane proteins. [My Copy] Methods (San Diego, Calif.), Vol. 41, No. 4. (April 2007), pp. 475-488. by Christian Kandt, Walter L. Ash, D. Peter Tieleman posted to dynamics md membrane modeling review transmembrane by xdeupi on 2007-03-26 10:15:17 as along with 3 people and 2 groups arnaucordomi choonpeng sobolevnrm LabCompMed baker-group
	Real-time optical recording of beta1-adrenergic receptor activation reveals supersensitivity of the Arg389 variant to carvedilol. [My Copy] J Clin Invest, Vol. 117, No. 1. (January 2007), pp. 229-235. by F. Rochais, J. P. Vilardaga, V. O. Nikolaev, M. Bünemann, M. J. Lohse, S. Engelhardt posted to activation agonist b2ar helix8 mutation by xdeupi on 2007-03-12 14:39:00 as along with 1 group LabCompMed
	Progress in structure prediction of α-helical membrane proteins [My Copy] Current Opinion in Structural Biology, Vol. 16, No. 4. (3 August 2006), pp. 496-504. by S. Fleishman, N. Bental posted to helix membrane_proteins review structure transmembrane by xdeupi on 2007-02-13 15:11:51 as along with 2 people and 1 group viktor21614 wouterboomsma LabCompMed
	G-protein coupled receptor structure. [My Copy] Biochim Biophys Acta (10 October 2006) by Philip L L. Yeagle, Arlene D D. Albert posted to activation gpcr review rhodopsin structure by xdeupi on 2006-11-17 20:57:15 as along with 4 people and 1 group gcaltabiano merj superpyrin adamsdi LabCompMed
	Dynamic helix interactions in transmembrane signaling. [My Copy] Cell, Vol. 127, No. 3. (3 November 2006), pp. 447-450. by E. E. Matthews, M. Zoonens, D. M. Engelman posted to activation dynamics helix review transmembrane by xdeupi on 2006-11-14 16:44:32 as along with 2 people and 1 group gcaltabiano ndoelker LabCompMed
	Functional selectivity and classical concepts of quantitative pharmacology. [My Copy] J Pharmacol Exp Ther (27 June 2006) by Jonathan D D. Urban, William P P. Clarke, Mark von Zastrow, et al.David E E. Nichols, Brian K K. Kobilka, Harel Weinstein, Jonathan A A. Javitch, Bryan L L. Roth, Arthur Christopoulos, Patrick Sexton, Keith Miller, Michael Spedding, Richard B B. Mailman posted to activation b2ar pharmacology review switch by xdeupi on 2006-09-07 15:43:50 as along with 2 people and 1 group shoshin kentsis LabCompMed
	ZPRED: Predicting the distance to the membrane center for residues in alpha-helical membrane proteins. [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006) by E. Granseth, H. Viklund, A. Elofsson posted to helix loops membrane modeling structure transmembrane by xdeupi on 2006-09-05 10:16:39 as along with 2 people and 1 group thaliana chrn LabCompMed
	G-protein-coupled receptors: past, present and future. [My Copy] Br J Pharmacol, Vol. 147 Suppl 1 (January 2006) by S. J. Hill posted to gpcr by xdeupi on 2006-03-01 16:33:55 as along with 3 people and 2 groups allanlo Fritz merj neurolit LabCompMed
	A chemogenomic analysis of the transmembrane binding cavity of human G-protein-coupled receptors. [My Copy] Proteins, Vol. 62, No. 2. (1 February 2006), pp. 509-538. by J. S. Surgand, J. Rodrigo, E. Kellenberger, D. Rognan posted to binding gpcr ligands transmembrane by xdeupi on 2006-03-01 16:33:01 as along with 1 person and 1 group naweill LabCompMed
	Role of the PAR1 Receptor 8th Helix in Signaling: THE 7-8-1 RECEPTOR ACTIVATION MECHANISM [My Copy] J. Biol. Chem., Vol. 281, No. 7. (17 February 2006), pp. 4109-4116. by Steven Swift, Andrew J. Leger, Joyce Talavera, Lei Zhang, Andrew Bohm, Athan Kuliopulos posted to activation gproteins helix8 n749 npxxy switch tm7 by xdeupi on 2006-02-13 15:54:53 as along with 1 group LabCompMed
	Automatic atom type and bond type perception in molecular mechanical calculations. [My Copy] J Mol Graph Model (1 February 2006) by Junmei Wang, Wei Wang, Peter A A. Kollman, David A A. Case posted to amber dynamics md modeling by xdeupi on 2006-02-13 15:46:26 as along with 5 people and 1 group A_Coletta_Thesis dgruiz nigham marcvanhouteghem AndreaColetta LabCompMed
	Evaluating Tilt Angles of Membrane-Associated Helices: Comparison of Computational and NMR Techniques [My Copy] Biophys. J., Vol. 90, No. 5. (1 March 2006), pp. 1650-1660. by Martin B. Ulmschneider, Mark S. Sansom, Alfredo Di Nola posted to helix membrane modeling structure transmembrane by xdeupi on 2006-02-10 09:49:58 as along with 2 people and 1 group thaliana loison LabCompMed
	Can Conformational Change Be Described by Only a Few Normal Modes? [My Copy] Biophys. J., Vol. 90, No. 5. (1 March 2006), pp. 1583-1593. by Paula Petrone, Vijay S. Pande posted to activation dynamics folding modeling by xdeupi on 2006-02-10 09:48:29 as along with 12 people and 7 groups ahmetbakan csrocha BragilMassoud barry dimka aqeel shuns yongzhao choonpeng joergkurtwegner daevans LamBras structural_bioinformatics Bioinformatics TSRI_MGL Molecular-Modelling Drug-Design Cheminformatics LabCompMed
	Determination of network of residues that regulate allostery in protein families using sequence analysis. [My Copy] Protein Sci, Vol. 15, No. 2. (February 2006), pp. 258-268. by R. I. Dima, D. Thirumalai posted to activation gpcr structure by xdeupi on 2006-01-30 09:31:44 as along with 6 people and 1 group apaydin gbart nirfriedman choonpeng tale mingzhi LabCompMed
	Structure of rhodopsin and the metarhodopsin I photointermediate. [My Copy] Curr Opin Struct Biol, Vol. 15, No. 4. (August 2005), pp. 408-415. by G. F. Schertler posted to activation crystallography rhodopsin structure by xdeupi on 2005-11-22 19:49:49 as along with 1 group LabCompMed
	Different structural requirements for the constitutive and the agonist-induced activities of the beta2-adrenergic receptor. [My Copy] J Biol Chem, Vol. 280, No. 25. (24 June 2005), pp. 23464-23474. by C. Ambrosio, P. Molinari, F. Fanelli, et al.Y. Chuman, M. Sbraccia, O. Ugur, T. Costa posted to activation agonist b2ar ser by xdeupi on 2005-10-31 23:54:01 as along with 1 group LabCompMed
	Exploring the mechanism of agonist efficacy: a relationship between efficacy and agonist dissociation rate at the muscarinic M3 receptor. [My Copy] Molecular pharmacology, Vol. 76, No. 3. (September 2009), pp. 543-551. by David A. Sykes, Mark R. Dowling, Steven J. Charlton posted to efficacy drug binding_kinetics binding agonist by xdeupi on 2009-10-06 17:50:31 as
	Structural Evidence for a Sequential Release Mechanism for Activation of Heterotrimeric G Proteins [My Copy] Journal of Molecular Biology (22 August 2009) by Neeraj Kapoor, Santosh T. Menon, Radha Chauhan, Pallavi Sachdev, Thomas P. Sakmar posted to switch gproteins active-state activation by xdeupi on 2009-08-28 12:55:12 as along with 1 person barry
	Kinetics of G-protein-coupled receptor signals in intact cells [My Copy] British Journal of Pharmacology, Vol. 153, No. S1. (14 March 2008), pp. S125-S132. by M. J. Lohse, P. Hein, C. Hoffmann, V. O. Nikolaev, J. P. Vilardaga, M. Bünemann posted to activation gpcr kinetics by xdeupi on 2009-05-22 11:54:35 as along with 3 people diod guhjy amwands
	G protein-coupled receptors show unusual patterns of intrinsic unfolding [My Copy] Protein Engineering, Design and Selection, Vol. 18, No. 2. (February 2005), pp. 103-110. by Veli-Pekka Jaakola, Jaime Prilusky, Joel L. Sussman, Adrian Goldman posted to cterm disorder dynamics flexibility folding icl3 loops modeling structure by xdeupi on 2009-03-27 09:41:46 as
	Chemistry. Following the flow of energy in biomolecules. [My Copy] Science, Vol. 310, No. 5750. (11 November 2005), pp. 980-982. by P. M. Champion posted to activation retinal review rhodopsin by xdeupi on 2007-07-30 17:02:29 as along with 1 group LabCompMed
	Determining membrane protein structures: still a challenge! [My Copy] Trends Biochem Sci (2 May 2007) by Jean-Jacques J. Lacapère, Eva Pebay-Peyroula, Jean-Michel M. Neumann, Catherine Etchebest posted to crystallography dynamics membrane_proteins nmr review structure by xdeupi on 2007-05-15 12:52:21 as along with 1 person and 1 group gcaltabiano LabCompMed
	Multiple residues in the second extracellular loop are critical for M3 muscarinic acetylcholine receptor activation. [My Copy] J Biol Chem, Vol. 282, No. 10. (9 March 2007), pp. 7385-7396. by M. Scarselli, B. Li, S. K. Kim, J. Wess posted to activation amine binding ecl2 loops mutation by xdeupi on 2007-04-23 10:28:29 as along with 1 person and 1 group IrinaMoreira LabCompMed
	Modeling activated states of GPCRs: the rhodopsin template. [My Copy] J Comput Aided Mol Des, Vol. 20, No. 7-8. (g 2006), pp. 437-448. by M. Y. Niv, L. Skrabanek, M. Filizola, H. Weinstein posted to activation dynamics md rhodopsin by xdeupi on 2007-03-26 10:22:13 as along with 1 person and 1 group IrinaMoreira LabCompMed
	Predisposition of the dark state of rhodopsin to functional changes in structure [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 4. (2006), pp. 970-983. by Basak Isin, A. J. Rader, Harpreet K. Dhiman, Judith Klein-Seetharaman, Ivet Bahar posted to activation dynamics modeling rhodopsin by xdeupi on 2007-02-26 09:19:19 as along with 1 person and 1 group aqeel LabCompMed
	How a small change in retinal leads to G-protein activation: initial events suggested by molecular dynamics calculations. [My Copy] Proteins, Vol. 66, No. 3. (15 February 2007), pp. 559-574. by P. S. Crozier, M. J. Stevens, T. B. Woolf posted to activation dynamics md modeling rhodopsin switch by xdeupi on 2007-02-26 09:15:15 as along with 1 group LabCompMed
	Both Ligand- and Cell-Specific Parameters Control Ligand Agonism in a Kinetic Model of G Protein-Coupled Receptor Signaling. [My Copy] PLoS Comput Biol, Vol. 3, No. 1. (12 January 2007) by Tamara L L. Kinzer-Ursem, Jennifer J J. Linderman posted to activation agonist b2ar pharmacology by xdeupi on 2007-02-13 15:38:17 as along with 1 group LabCompMed
	Introduction to the membrane protein reviews: the interplay of structure, dynamics, and environment in membrane protein function. [My Copy] Annu Rev Biochem, Vol. 75 (2006), pp. 707-712. by J. N. Sachs, D. M. Engelman posted to membrane_proteins review by xdeupi on 2007-02-13 14:57:52 as along with 1 group LabCompMed
	The ring of the rhodopsin chromophore in a hydrophobic activation switch within the binding pocket. [My Copy] J Mol Biol, Vol. 343, No. 3. (22 October 2004), pp. 719-730. by P. J. Spooner, J. M. Sharples, S. C. Goodall, et al.P. H. Bovee-Geurts, M. A. Verhoeven, J. Lugtenburg, A. M. Pistorius, W. J. Degrip, A. Watts posted to activation nmr rhodopsin switch w648 by xdeupi on 2006-10-26 11:46:48 as along with 1 group LabCompMed
	Helix-packing motifs in membrane proteins. [My Copy] Proc Natl Acad Sci U S A (5 September 2006) by R F S F. Walters, W F F. Degrado posted to folding helix membrane modeling sequence structure transmembrane by xdeupi on 2006-09-13 10:25:08 as along with 5 people and 1 group hc5428 thaliana dgront sebk chgjb LabCompMed
	Recent advances and applications of site-directed spin labeling. [My Copy] Curr Opin Struct Biol (31 August 2006) by Gail E E. Fanucci, David S S. Cafiso posted to review spin_labeling toac by xdeupi on 2006-09-12 11:53:23 as along with 1 person and 1 group viktor21614 LabCompMed
	G proteins in drug screening: from analysis of receptor-G protein specificity to manipulation of GPCR-mediated signalling pathways. [My Copy] Curr Pharm Des, Vol. 12, No. 14. (2006), pp. 1703-1715. by E. Kostenis posted to activation cterm drug ecl2 gpcr gproteins pharmacology by xdeupi on 2006-09-05 09:59:05 as along with 1 group LabCompMed
	Determining the Potency and Molecular Mechanism of Action of Insurmountable Antagonists. [My Copy] J Pharmacol Exp Ther (20 July 2006) by Terry P P. Kenakin, Stephen Jenkinson, Christian Watson posted to activation drug ligands agonist pharmacology by xdeupi on 2006-09-05 09:51:58 as along with 1 group LabCompMed
	A two-entropies analysis to identify functional positions in the transmembrane region of class A G protein-coupled receptors [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 4. (1 June 2006), pp. 1018-1030. by Kai Ye, Eric-Wubbo M. Lameijer, Margot W. Beukers, Adriaan P. Ijzerman posted to activation gpcr sequence transmembrane by xdeupi on 2006-07-24 10:21:33 as along with 2 people and 1 group cen4ik cat_worth LabCompMed
	Data-Driven Analysis in Drug Discovery [My Copy] Journal of Receptors and Signal Transduction, Vol. 26, No. 4. (August 2006), pp. 299-327. by Terry Kenakin posted to agonist binding drug ligands pharmacology by xdeupi on 2006-07-17 16:28:05 as along with 1 group LabCompMed
	Role of the retinal hydrogen bond network in rhodopsin Schiff base stability and hydrolysis. [My Copy] J Biol Chem, Vol. 279, No. 53. (31 December 2004), pp. 55886-55894. by J. M. Janz, D. L. Farrens posted to activation binding rhodopsin by xdeupi on 2006-05-29 11:58:42 as along with 1 group LabCompMed
	A GPCR that is not "DRY". [My Copy] Mol Pharmacol, Vol. 68, No. 1. (July 2005), pp. 1-3. by C. A. Flanagan posted to activation dry gpcr ionic switch tm3 by xdeupi on 2006-05-23 12:08:02 as along with 1 group LabCompMed
	Folding of helical membrane proteins: the role of polar, GxxxG-like and proline motifs. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 4. (August 2004), pp. 465-479. by A. Senes, D. E. Engel, W. F. DeGrado posted to folding gly membrane pro-kink sequence ser structure transmembrane by xdeupi on 2006-05-22 10:55:10 as along with 1 person and 1 group thaliana LabCompMed

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activation	173
gpcr	112
structure	89
rhodopsin	79
review	65
modeling	62
b2ar	58
dynamics	56
helix	50
transmembrane	47
agonist	46
binding	44
theory	43
ligands	41
drug	36
md	35
switch	34
membrane_proteins	31
pharmacology	31
crystallography	30
nmr	30
membrane	26
gproteins	24
dimer	20
fluorescence	18
sequence	17
ser	17
active-state	15
pro-kink	15
folding	14
fret	14
genome	14
loops	14
flexibility	13
disease	12
tm6	12
cterm	11
mutation	11
retinal	11
amber	10
energy_landscape	10
evolution	10
toggle	10
docking	9
kinetics	9
lipids	9
neurokinin	9
tm5	9
arrestin	8
chemokine	8
gpcrs	8
hbond	8
helix8	8
imaging	8
bimane	7
cancer	7
channel	7
ecl2	7
gly	7
icl3	7
ionic	7
lmc_101	7
plasticity	7
protonation	7
tm3	7
w648	7
cation-pi	6
ccr5	6
cys_scanning	6
d250	6
internalization	6
npxxy	6
opioid	6
thyrotropin	6
tm2	6
xray	6
amine	5
binding_kinetics	5
conformational_changes	5
dimerization	5
dry	5
expression	5
lock	5
polymorphism	5
spectroscopy	5
thr	5
trp	5
antagonist	4
cam	4
cholesterol	4
disorder	4
hormone	4
n749	4
nterm	4
pathway	4
tm7	4
water	4
angiotensin	3
biased_agonism	3
cxcr1	3
grk	3
histamine	3
n745	3
oligomerization	3
spin_labeling	3
toac	3
webserver	3
5ht1a	2
chimera	2
crosslinking	2
em	2
leukotriene	2
lhr	2
networks	2
pathways	2
phylogeny	2
s542	2
solvation	2
tm1	2
tmhs	2
txp	2
b1ar	1
binding_site	1
class_c	1
efficacy	1
gaba	1
induced_fit	1
inverse_agonist	1
kinase	1
kinks	1
metai	1
oligomers	1
peptide	1
priviledged_structures	1
protein_docking	1
selectivity	1
sequence_alignment	1
tm4	1
transducin	1
vasopressin	1

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