xdeupi's flexibility [13 articles] Export

Recent papers added to xdeupi's library classified by the tag flexibility. You can also see everyone's flexibility.

	Low-frequency vibrational modes and infrared absorbance of red, blue and green opsin. [My Copy] Journal of molecular modeling, Vol. 15, No. 8. (August 2009), pp. 959-969. by Saravana Prakash P. Thirumuruganandham, Herbert M. Urbassek posted to membrane_proteins md flexibility energy_landscape dynamics disorder by xdeupi on 2009-10-25 11:22:15 as along with 2 people saravan gcaltabiano
	Identification of two distinct inactive conformations of the beta2-adrenergic receptor reconciles structural and biochemical observations. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 12. (24 March 2009), pp. 4689-4694. by Ron O. Dror, Daniel H. Arlow, David W. Borhani, Morten Ø. Jensen, Stefano Piana, David E. Shaw posted to theory structure modeling md flexibility dynamics b2ar activation by xdeupi on 2009-10-08 11:13:04 as along with 2 people dimka agrossfield
	Influence of the g- conformation of Ser and Thr on the structure of transmembrane helices. [My Copy] Journal of structural biology (17 September 2009) by Xavier Deupi, Mireia Olivella, Arantxa Sanz, Nicole Dölker, Mercedes Campillo, Leonardo Pardo posted to tm5 theory structure ser plasticity helix hbond flexibility dynamics amber activation by xdeupi on 2009-09-25 14:15:01 as
	The energy landscapes and motions of proteins. [My Copy] Science (New York, N.Y.), Vol. 254, No. 5038. (13 December 1991), pp. 1598-1603. by H. Frauenfelder, S. G. Sligar, P. G. Wolynes posted to theory review plasticity kinetics flexibility energy_landscape dynamics active-state activation by xdeupi on 2009-08-31 15:05:33 as along with 3 people FilipeMaia naitsabes kjell
	Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (12 August 2008), pp. 11182-11187. by Kei-ichi Okazaki, Shoji Takada posted to activation active-state dynamics energy_landscape flexibility kinetics modeling nmr plasticity theory by xdeupi on 2009-07-11 11:26:37 as along with 8 people and 2 groups oteri bmduggan okapi aqeel raik ruvido barry zwang structural_bioinformatics McCammon
	Observation of Ionic Lock Formation in Molecular Dynamics Simulations of Wild Type 1 and 2 Adrenergic Receptors. [My Copy] Biochemistry (20 April 2009) by Stefano Vanni, Marilisa Neri, Ivano Tavernelli, Ursula Rothlisberger posted to activation b2ar dry dynamics flexibility ionic lock md protonation solvation switch tm3 tm6 water by xdeupi on 2009-05-06 09:56:27 as along with 3 people and 1 group arnaucordomi jmccammon agrossfield McCammon
	Wide turn diversity in protein transmembrane helices implications for G-protein-coupled receptor and other polytopic membrane protein structure and function. [My Copy] Molecular pharmacology, Vol. 73, No. 4. (April 2008), pp. 1092-1104. by R. Peter Riek, Angela A. Finch, Gillian E. Begg, Robert M. Graham posted to flexibility helix membrane_proteins modeling pro-kink ser structure theory thr transmembrane by xdeupi on 2009-04-17 11:47:42 as
	G protein-coupled receptors show unusual patterns of intrinsic unfolding [My Copy] Protein Engineering, Design and Selection, Vol. 18, No. 2. (February 2005), pp. 103-110. by Veli-Pekka Jaakola, Jaime Prilusky, Joel L. Sussman, Adrian Goldman posted to cterm disorder dynamics flexibility folding icl3 loops modeling structure by xdeupi on 2009-03-27 09:41:46 as
	Protein Dynamics, Thermal Stability, and Free-Energy Landscapes: A Molecular Dynamics Investigation [My Copy] Vol. 85, No. 4. (1 October 2003), pp. 2641-2649. by Ivano Tavernelli, Simona Cotesta, Ernesto E. Di Iorio posted to activation dynamics flexibility md nmr ser by xdeupi on 2009-03-16 20:05:04 as
	Analysis of side-chain rotamers in transmembrane proteins. [My Copy] Biophysical journal, Vol. 87, No. 5. (November 2004), pp. 3460-3469. by A. K. Chamberlain, J. U. Bowie posted to flexibility hbond helix membrane_proteins ser structure thr transmembrane by xdeupi on 2008-05-15 11:35:47 as along with 1 person and 1 group carlk LabCompMed
	Uniformity, ideality, and hydrogen bonds in transmembrane alpha-helices. [My Copy] Biophysical journal, Vol. 83, No. 4. (October 2002), pp. 2084-2095. by S. Kim, T. A. Cross posted to flexibility hbond helix structure transmembrane by xdeupi on 2008-05-13 16:00:40 as
	Protein-Protein Docking with Backbone Flexibility [My Copy] Journal of Molecular Biology, Vol. 373, No. 2. (19 October 2007), pp. 503-519. by Chu Wang, Philip Bradley, David Baker posted to docking flexibility modeling theory by xdeupi on 2008-04-07 14:23:45 as along with 6 people and 2 groups mijam kgutwin csrocha barry jwm Ema structural_bioinformatics Bioinformatics
	Protein flexibility using constraints from molecular dynamics simulations. [My Copy] Phys Biol, Vol. 2, No. 4. (November 2005) by T. Mamonova, B. Hespenheide, R. Straub, M. F. Thorpe, M. Kurnikova posted to activation dynamics flexibility md by xdeupi on 2007-05-21 09:38:21 as along with 3 people and 1 group lna LamBras higueruelo LabCompMed

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activation	171
gpcr	110
structure	89
rhodopsin	79
review	64
modeling	62
b2ar	58
dynamics	56
helix	50
transmembrane	47
agonist	46
binding	44
theory	42
ligands	41
drug	36
md	35
switch	34
membrane_proteins	31
crystallography	30
nmr	30
pharmacology	30
membrane	26
gproteins	23
dimer	20
fluorescence	18
sequence	17
ser	17
active-state	15
folding	14
fret	14
genome	14
loops	14
pro-kink	14
flexibility	13
disease	12
tm6	12
cterm	11
mutation	11
retinal	11
amber	10
evolution	10
toggle	10
docking	9
energy_landscape	9
kinetics	9
lipids	9
neurokinin	9
tm5	9
arrestin	8
chemokine	8
gpcrs	8
hbond	8
helix8	8
imaging	8
bimane	7
cancer	7
channel	7
ecl2	7
gly	7
icl3	7
ionic	7
lmc_101	7
plasticity	7
protonation	7
tm3	7
w648	7
cation-pi	6
ccr5	6
cys_scanning	6
d250	6
internalization	6
npxxy	6
opioid	6
thyrotropin	6
tm2	6
xray	6
amine	5
binding_kinetics	5
conformational_changes	5
dimerization	5
dry	5
expression	5
lock	5
polymorphism	5
spectroscopy	5
thr	5
trp	5
antagonist	4
cam	4
cholesterol	4
disorder	4
hormone	4
n749	4
nterm	4
pathway	4
tm7	4
water	4
angiotensin	3
biased_agonism	3
cxcr1	3
grk	3
histamine	3
n745	3
oligomerization	3
spin_labeling	3
toac	3
webserver	3
5ht1a	2
chimera	2
crosslinking	2
em	2
leukotriene	2
lhr	2
networks	2
pathways	2
phylogeny	2
s542	2
solvation	2
tm1	2
tmhs	2
txp	2
b1ar	1
binding_site	1
class_c	1
efficacy	1
gaba	1
induced_fit	1
inverse_agonist	1
kinase	1
kinks	1
metai	1
oligomers	1
peptide	1
priviledged_structures	1
proline	1
protein_docking	1
sequence_alignment	1
tm4	1
transducin	1
vasopressin	1

xdeupi's flexibility [13 articles] Export

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