xdeupi's helix [50 articles] Export

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	Structural and kinetic modeling of an activating helix switch in the rhodopsin-transducin interface. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 26. (30 June 2009), pp. 10660-10665. by Patrick Scheerer, Martin Heck, Andrean Goede, et al.Jung Hee H. Park, Hui-Woog W. Choe, Oliver P. Ernst, Klaus Peter P. Hofmann, Peter W. Hildebrand posted to transducin switch structure rhodopsin modeling kinetics helix activation by xdeupi on 2009-10-06 18:16:43 as
	Predicting helix-helix interactions from residue contacts in membrane proteins [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 996-1003. by Allan Lo, Yi-Yuan Chiu, Einar A. Rodland, Ping-Chiang Lyu, Ting-Yi Sung, Wen-Lian Hsu posted to tmhs networks membrane_proteins helix by xdeupi on 2009-10-06 18:10:55 as along with 7 people dfdong ChanghuiYan george_g friendpine neils zwang phoenixzxl
	MemBrain: improving the accuracy of predicting transmembrane helices. [My Copy] PloS one, Vol. 3, No. 6. (2008) by Hongbin Shen, James J. Chou posted to webserver tmhs theory membrane_proteins helix by xdeupi on 2009-10-06 18:00:49 as
	Position of helical kinks in membrane protein crystal structures and the accuracy of computational prediction. [My Copy] Journal of molecular graphics & modelling, Vol. 27, No. 8. (June 2009), pp. 944-950. by Spencer E. Hall, Kyle Roberts, Nagarajan Vaidehi posted to theory pro-kink membrane_proteins kinks helix by xdeupi on 2009-10-06 17:52:20 as
	Influence of the g- conformation of Ser and Thr on the structure of transmembrane helices. [My Copy] Journal of structural biology (17 September 2009) by Xavier Deupi, Mireia Olivella, Arantxa Sanz, Nicole Dölker, Mercedes Campillo, Leonardo Pardo posted to tm5 theory structure ser plasticity helix hbond flexibility dynamics amber activation by xdeupi on 2009-09-25 14:15:01 as
	Inter-helical Interactions in Membrane Proteins: Analysis Based on the Local Backbone Geometry and the Side Chain Interactions. [My Copy] Journal of biomolecular structure & dynamics, Vol. 26, No. 6. (June 2009), pp. 719-730. by A. N. Jha, S. Vishveshwara posted to dimer helix membrane_proteins structure theory transmembrane by xdeupi on 2009-05-06 09:54:37 as
	Wide turn diversity in protein transmembrane helices implications for G-protein-coupled receptor and other polytopic membrane protein structure and function. [My Copy] Molecular pharmacology, Vol. 73, No. 4. (April 2008), pp. 1092-1104. by R. Peter Riek, Angela A. Finch, Gillian E. Begg, Robert M. Graham posted to flexibility helix membrane_proteins modeling pro-kink ser structure theory thr transmembrane by xdeupi on 2009-04-17 11:47:42 as
	Proline-induced distortions of transmembrane helices. [My Copy] J Mol Biol, Vol. 323, No. 5. (8 November 2002), pp. 951-960. by F. S. Cordes, J. N. Bright, M. S. Sansom posted to activation helix membrane_proteins pro-kink structure theory transmembrane by xdeupi on 2008-05-27 11:58:27 as along with 1 person thaliana
	Analysis of side-chain rotamers in transmembrane proteins. [My Copy] Biophysical journal, Vol. 87, No. 5. (November 2004), pp. 3460-3469. by A. K. Chamberlain, J. U. Bowie posted to flexibility hbond helix membrane_proteins ser structure thr transmembrane by xdeupi on 2008-05-15 11:35:47 as along with 1 person and 1 group carlk LabCompMed
	Transmembrane helix uniformity examined by spectral mapping of torsion angles. [My Copy] Structure (London, England : 1993), Vol. 16, No. 5. (May 2008), pp. 787-797. by R. C. Page, S. Kim, T. A. Cross posted to hbond helix structure transmembrane by xdeupi on 2008-05-13 16:04:28 as
	Uniformity, ideality, and hydrogen bonds in transmembrane alpha-helices. [My Copy] Biophysical journal, Vol. 83, No. 4. (October 2002), pp. 2084-2095. by S. Kim, T. A. Cross posted to flexibility hbond helix structure transmembrane by xdeupi on 2008-05-13 16:00:40 as
	Transmembrane proteins in the Protein Data Bank: identification and classification. [My Copy] Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 2964-2972. by G. E. Tusnády, Z. Dosztányi, I. Simon posted to helix lmc_101 membrane_proteins structure by xdeupi on 2008-04-08 13:55:52 as along with 4 people and 1 group kallberg chrn sebk viktor21614 LabCompMed
	Formation of Transmembrane Helices In Vivo--Is Hydrophobicity All that Matters? [My Copy] J. Gen. Physiol., Vol. 129, No. 5. (30 April 2007), pp. 353-356. by Gunnar von Heijne posted to helix membrane_proteins review structure transmembrane by xdeupi on 2007-06-29 21:20:58 as along with 2 people and 1 group hc5428 thaliana LabCompMed
	Comparison of stability predictions and simulated unfolding of rhodopsin structures. [My Copy] Photochem Photobiol, Vol. 83, No. 2. (r 2007), pp. 351-363. by O. Tastan, E. Yu, M. Ganapathiraju, A. Aref, A. J. Rader, J. Klein-Seetharaman posted to folding helix membrane_proteins mutation rhodopsin structure transmembrane by xdeupi on 2007-06-25 10:08:49 as along with 1 group LabCompMed
	Folding Amphipathic Helices Into Membranes: Amphiphilicity Trumps Hydrophobicity. [My Copy] J Mol Biol (22 May 2007) by Mónica Fernández-Vidal, Sajith Jayasinghe, Alexey S S. Ladokhin, Stephen H H. White posted to folding helix membrane_proteins transmembrane by xdeupi on 2007-06-02 19:22:34 as along with 1 group LabCompMed
	An automated approach for clustering an ensemble of NMR-derived protein structures into conformationally related subfamilies [My Copy] Protein Eng., Vol. 9, No. 11. (1996), pp. 1063-1065. by Lawrence A. Kelley, Stephen P. Gardner, Michael J. Sutcliffe posted to dynamics helix md modeling structure theory by xdeupi on 2007-05-31 10:31:28 as along with 1 group LabCompMed
	Formation of Transmembrane Helices In Vivo--Is Hydrophobicity All that Matters? [My Copy] J Cell Biol, Vol. 177, No. 4. (21 May 2007) by G. von Heijne posted to helix membrane_proteins transmembrane by xdeupi on 2007-05-28 08:52:53 as along with 1 group LabCompMed
	Helix packing moments reveal diversity and conservation in membrane protein structure. [My Copy] J Mol Biol, Vol. 337, No. 3. (26 March 2004), pp. 713-729. by W. Liu, M. Eilers, A. B. Patel, S. O. Smith posted to gpcr helix membrane_proteins rhodopsin sequence ser structure transmembrane by xdeupi on 2007-04-26 13:49:38 as along with 1 group LabCompMed
	From Interactions of Single Transmembrane Helices to Folding of alpha-Helical Membrane Proteins: Analyzing Transmembrane Helix-Helix Interactions in Bacteria. [My Copy] Curr Protein Pept Sci, Vol. 8, No. 1. (February 20067), pp. 45-61. by Dirk Schneider, Carmen Finger, Alexander Prodöhl, Thomas Volkmer posted to helix membrane_proteins review sequence structure transmembrane by xdeupi on 2007-02-26 09:06:23 as along with 1 group LabCompMed
	Progress in structure prediction of α-helical membrane proteins [My Copy] Current Opinion in Structural Biology, Vol. 16, No. 4. (3 August 2006), pp. 496-504. by S. Fleishman, N. Bental posted to helix membrane_proteins review structure transmembrane by xdeupi on 2007-02-13 15:11:51 as along with 2 people and 1 group viktor21614 wouterboomsma LabCompMed
	How protein transmembrane segments sense the lipid environment. [My Copy] Biochemistry, Vol. 46, No. 6. (13 February 2007), pp. 1457-1465. by T. K. Nyholm, S. Ozdirekcan, J. A. Killian posted to helix lipids membrane_proteins transmembrane by xdeupi on 2007-02-13 14:59:06 as along with 2 people and 1 group andreasauerwein sebk LabCompMed
	Dynamic helix interactions in transmembrane signaling. [My Copy] Cell, Vol. 127, No. 3. (3 November 2006), pp. 447-450. by E. E. Matthews, M. Zoonens, D. M. Engelman posted to activation dynamics helix review transmembrane by xdeupi on 2006-11-14 16:44:32 as along with 2 people and 1 group gcaltabiano ndoelker LabCompMed
	dummy [My Copy] by Dummy posted to 5ht1a activation agonist amber amine arrestin b2ar bimane binding cam ccr5 channel chemokine chimera crystallography cterm cxcr1 d250 dimer disease drug dry dynamics ecl2 evolution expression fluorescence folding fret genome gly gpcr gproteins hbond helix helix8 histamine hormone icl3 imaging internalization ionic leukotriene lhr ligands lipids lock loops md membrane modeling mutation n745 n749 nmr npxxy nterm opioid pharmacology polymorphism pro-kink protonation review rhodopsin s542 sequence ser spin_labeling structure switch thr thyrotropin tm2 tm3 tm5 tm6 tm7 toggle transmembrane trp txp w648 by xdeupi on 2006-10-30 12:30:16 as along with 2 people and 1 group jessicaopacic ivanrt LabCompMed
	An amino acid "transmembrane tendency" scale that approaches the theoretical limit to accuracy for prediction of transmembrane helices: relationship to biological hydrophobicity. [My Copy] Protein Sci, Vol. 15, No. 8. (August 2006), pp. 1987-2001. by G. Zhao, E. London posted to helix sequence transmembrane by xdeupi on 2006-10-27 09:46:58 as along with 1 group LabCompMed
	Helix-packing motifs in membrane proteins. [My Copy] Proc Natl Acad Sci U S A (5 September 2006) by R F S F. Walters, W F F. Degrado posted to folding helix membrane modeling sequence structure transmembrane by xdeupi on 2006-09-13 10:25:08 as along with 5 people and 1 group hc5428 thaliana dgront sebk chgjb LabCompMed
	Mutational and bioinformatics analysis of proline- and glycine-rich motifs in vesicular acetylcholine transporter [My Copy] Journal of Neurochemistry, Vol. 98, No. 5. (September 2006), pp. 1551-1559. by Chandrasekaran, Ananda, Ojeda, et al.M. Ana, Kolmakova, G. Natalia, Parsons, M. Stanley posted to activation channel gly helix mutation pro-kink structure transmembrane by xdeupi on 2006-09-05 11:43:55 as along with 1 group LabCompMed
	Asymmetric stability among the transmembrane helices of lactose permease. [My Copy] Biochemistry, Vol. 45, No. 26. (4 July 2006), pp. 8088-8095. by M. Bennett, R. D'Rozario, M. S. Sansom, P. L. Yeagle posted to activation dynamics helix md modeling structure transmembrane by xdeupi on 2006-09-05 11:09:02 as along with 1 group LabCompMed
	ZPRED: Predicting the distance to the membrane center for residues in alpha-helical membrane proteins. [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006) by E. Granseth, H. Viklund, A. Elofsson posted to helix loops membrane modeling structure transmembrane by xdeupi on 2006-09-05 10:16:39 as along with 2 people and 1 group thaliana chrn LabCompMed
	The role of proline residues in the dynamics of transmembrane helices: the case of bacteriorhodopsin [My Copy] Molecular Membrane Biology, Vol. 23, No. 2. (8211), pp. 127-135. by Peralvarez-Marin, Alex, Bourdelande, et al. Jose-Luis, Querol, Enric, Padros, Esteve posted to pro-kink structure activation crystallography helix mutation by xdeupi on 2006-09-05 09:47:32 as along with 1 group LabCompMed
	Lipid Solvation Effects Contribute to the Affinity of Gly-xxx-Gly Motif-Mediated Helix-Helix Interactions. [My Copy] Biochemistry, Vol. 45, No. 28. (18 July 2006), pp. 8507-8515. by R. M. Johnson, A. Rath, R. A. Melnyk, C. M. Deber posted to dimer gly helix lipids transmembrane by xdeupi on 2006-07-24 11:49:04 as along with 1 person and 1 group viktor21614 LabCompMed
	How strongly do sequence conservation patterns and empirical scales correlate with exposure patterns of transmembrane helices of membrane proteins? [My Copy] Biopolymers (12 July 2006) by Yungki Park, Volkhard Helms posted to helix sequence transmembrane by xdeupi on 2006-07-24 11:46:23 as along with 1 person and 1 group thaliana LabCompMed
	Molecular mechanism of 7TM receptor activation--a global toggle switch model. [My Copy] Annu Rev Pharmacol Toxicol, Vol. 46 (2006), pp. 481-519. by T. W. Schwartz, T. M. Frimurer, B. Holst, M. M. Rosenkilde, C. E. Elling posted to activation gpcr helix modeling switch toggle by xdeupi on 2006-06-01 14:31:34 as along with 1 person and 1 group superpyrin LabCompMed
	Changes in interhelical hydrogen bonding upon rhodopsin activation. [My Copy] J Mol Biol, Vol. 347, No. 4. (8 April 2005), pp. 803-812. by A. B. Patel, E. Crocker, P. J. Reeves, et al.E. V. Getmanova, M. Eilers, H. G. Khorana, S. O. Smith posted to activation b2ar binding hbond helix ligands nmr pro-kink rhodopsin ser structure switch tm5 tm6 toggle by xdeupi on 2006-06-01 13:51:11 as along with 1 group LabCompMed
	Statistical analysis of amino acid patterns in transmembrane helices: the GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions. [My Copy] J Mol Biol, Vol. 296, No. 3. (25 February 2000), pp. 921-936. by A. Senes, M. Gerstein, D. M. Engelman posted to dimer folding gly helix membrane transmembrane by xdeupi on 2006-05-22 10:15:33 as along with 1 person and 1 group nedwards LabCompMed
	The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 4. (27 January 2004), pp. 959-963. by S. Yohannan, S. Faham, D. Yang, J. P. Whitelegge, J. U. Bowie posted to evolution helix lmc_101 mutation pro-kink sequence structure transmembrane by xdeupi on 2006-05-15 15:16:00 as along with 1 person and 1 group thaliana LabCompMed
	The role of extra-membranous inter-helical loops in helix-helix interactions. [My Copy] Protein Eng Des Sel, Vol. 18, No. 12. (December 2005), pp. 563-570. by M. B. Ulmschneider, D. P. Tieleman, M. S. Sansom posted to dynamics helix loops md membrane transmembrane by xdeupi on 2006-03-06 09:46:32 as along with 2 people and 1 group thaliana allanlo LabCompMed
	Dissecting the energetics of protein [alpha]-helix C-cap termination through chemical protein synthesis [My Copy] Nat Chem Biol, Vol. 2, No. 3. (March 2006), pp. 139-143. by Duhee Bang, Alexey V. Gribenko, Valentina Tereshko, Anthony A. Kossiakoff, Stephen B. Kent, George Makhatadze posted to gly helix loops structure by xdeupi on 2006-02-24 11:19:23 as along with 1 group LabCompMed
	Evaluating Tilt Angles of Membrane-Associated Helices: Comparison of Computational and NMR Techniques [My Copy] Biophys. J., Vol. 90, No. 5. (1 March 2006), pp. 1650-1660. by Martin B. Ulmschneider, Mark S. Sansom, Alfredo Di Nola posted to helix membrane modeling structure transmembrane by xdeupi on 2006-02-10 09:49:58 as along with 2 people and 1 group thaliana loison LabCompMed
	Interhelical hydrogen bonds and spatial motifs in membrane proteins: polar clamps and serine zippers. [My Copy] Proteins, Vol. 47, No. 2. (1 May 2002), pp. 209-218. by L. Adamian, J. Liang posted to hbond helix membrane ser by xdeupi on 2006-01-27 14:29:10 as along with 1 person and 1 group thaliana LabCompMed
	The alpha-helix, an overlooked molecular motor. [My Copy] Protoplasma, Vol. 227, No. 1. (March 2006), pp. 37-46. by R. Jarosch posted to helix by xdeupi on 2006-01-11 11:28:47 as along with 1 group LabCompMed
	Self-association of Transmembrane alpha-Helices in Model Membranes: IMPORTANCE OF HELIX ORIENTATION AND ROLE OF HYDROPHOBIC MISMATCH. [My Copy] J Biol Chem, Vol. 280, No. 47. (25 November 2005), pp. 39324-39331. by Emma Sparr, Walter L L. Ash, Petr V V. Nazarov, et al.Dirk T S T. Rijkers, Marcus A A. Hemminga, D Peter P. Tieleman, J Antoinette A. Killian posted to helix transmembrane by xdeupi on 2005-11-22 19:50:55 as along with 1 person and 1 group choonpeng LabCompMed
	Tryptophan Supports Interaction of Transmembrane Helices. [My Copy] J Mol Biol (21 October 2005) by Anja Ridder, Paulina Skupjen, Stephanie Unterreitmeier, Dieter Langosch posted to helix transmembrane trp by xdeupi on 2005-11-11 22:08:07 as along with 1 person and 1 group thaliana LabCompMed
	The binding site of aminergic G protein-coupled receptors: the transmembrane segments and second extracellular loop. [My Copy] Annu Rev Pharmacol Toxicol, Vol. 42 (2002), pp. 437-467. by L. Shi, J. A. Javitch posted to agonist binding ecl2 gpcr helix loops transmembrane by xdeupi on 2005-11-01 01:00:19 as along with 1 person and 1 group IrinaMoreira LabCompMed
	Activation of the beta 2-adrenergic receptor involves disruption of an ionic lock between the cytoplasmic ends of transmembrane segments 3 and 6. [My Copy] J Biol Chem, Vol. 276, No. 31. (3 August 2001), pp. 29171-29177. by J. A. Ballesteros, A. D. Jensen, G. Liapakis, et al.S. G. Rasmussen, L. Shi, U. Gether, J. A. Javitch posted to activation b2ar gpcr helix ionic lock pro-kink switch tm3 tm6 by xdeupi on 2005-11-01 00:58:31 as along with 1 person and 1 group IrinaMoreira LabCompMed
	Entropy and oligomerization in GPCRs. [My Copy] J Mol Neurosci, Vol. 26, No. 2-3. (2005), pp. 113-122. by R. P. Thummer, M. P. Campbell, M. K. Dean, M. J. Frusher, P. D. Scott, C. A. Reynolds posted to dimer gpcr helix by xdeupi on 2005-10-27 22:46:48 as along with 1 group LabCompMed
	Serine and threonine residues bend alpha-helices in the chi(1) = g(-) conformation. [My Copy] Biophys J, Vol. 79, No. 5. (November 2000), pp. 2754-2760. by J. A. Ballesteros, X. Deupi, M. Olivella, E. E. Haaksma, L. Pardo posted to helix ser thr by xdeupi on 2005-10-25 03:25:18 as along with 1 person and 1 group IrinaMoreira LabCompMed
	The TXP motif in the second transmembrane helix of CCR5. A structural determinant of chemokine-induced activation. [My Copy] J Biol Chem, Vol. 276, No. 16. (20 April 2001), pp. 13217-13225. by C. Govaerts, C. Blanpain, X. Deupi, et al.S. Ballet, J. A. Ballesteros, S. J. Wodak, G. Vassart, L. Pardo, M. Parmentier posted to ccr5 helix tm2 transmembrane txp by xdeupi on 2005-10-25 03:18:46 as along with 1 person and 1 group tkershaw LabCompMed
	Influence of the environment in the conformation of alpha-helices studied by protein database search and molecular dynamics simulations. [My Copy] Biophysical journal, Vol. 82, No. 6. (June 2002), pp. 3207-3213. by M. Olivella, X. Deupi, C. Govaerts, L. Pardo posted to helix md by xdeupi on 2005-10-25 03:17:23 as along with 2 people and 1 group carlosjavierna choonpeng LabCompMed
	Activation of CCR5 by chemokines involves an aromatic cluster between transmembrane helices 2 and 3. [My Copy] J Biol Chem, Vol. 278, No. 3. (17 January 2003), pp. 1892-1903. by C. Govaerts, A. Bondue, J. Y. Springael, et al.M. Olivella, X. Deupi, E. Le Poul, S. J. Wodak, M. Parmentier, L. Pardo, C. Blanpain posted to activation ccr5 helix tm2 tm3 by xdeupi on 2005-10-25 03:15:57 as along with 1 person and 1 group tkershaw LabCompMed
	Ser and Thr residues modulate the conformation of pro-kinked transmembrane alpha-helices. [My Copy] Biophys J, Vol. 86, No. 1 Pt 1. (January 2004), pp. 105-115. by X. Deupi, M. Olivella, C. Govaerts, J. A. Ballesteros, M. Campillo, L. Pardo posted to helix pro-kink ser thr by xdeupi on 2005-10-25 03:14:58 as along with 2 people and 1 group carlosjavierna thaliana LabCompMed

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activation	173
gpcr	112
structure	89
rhodopsin	79
review	65
modeling	62
b2ar	58
dynamics	56
helix	50
transmembrane	47
agonist	46
binding	45
theory	44
ligands	41
drug	36
md	35
switch	34
membrane_proteins	31
pharmacology	31
crystallography	30
nmr	30
membrane	26
gproteins	24
dimer	20
fluorescence	18
sequence	17
ser	17
active-state	15
pro-kink	15
folding	14
fret	14
genome	14
loops	14
flexibility	13
disease	12
tm6	12
cterm	11
mutation	11
retinal	11
amber	10
energy_landscape	10
evolution	10
toggle	10
arrestin	9
docking	9
kinetics	9
lipids	9
neurokinin	9
tm5	9
chemokine	8
gpcrs	8
hbond	8
helix8	8
imaging	8
bimane	7
cancer	7
channel	7
ecl2	7
gly	7
icl3	7
ionic	7
lmc_101	7
plasticity	7
protonation	7
tm3	7
w648	7
cation-pi	6
ccr5	6
conformational_changes	6
cys_scanning	6
d250	6
internalization	6
npxxy	6
opioid	6
thyrotropin	6
tm2	6
xray	6
amine	5
binding_kinetics	5
dimerization	5
dry	5
expression	5
lock	5
polymorphism	5
spectroscopy	5
thr	5
trp	5
angiotensin	4
antagonist	4
biased_agonism	4
cam	4
cholesterol	4
disorder	4
hormone	4
n749	4
nterm	4
pathway	4
tm7	4
water	4
cxcr1	3
grk	3
histamine	3
n745	3
oligomerization	3
spin_labeling	3
toac	3
webserver	3
5ht1a	2
chimera	2
crosslinking	2
em	2
leukotriene	2
lhr	2
networks	2
pathways	2
phylogeny	2
s542	2
solvation	2
tm1	2
tmhs	2
txp	2
b1ar	1
binding_site	1
class_c	1
efficacy	1
gaba	1
induced_fit	1
inverse_agonist	1
kinase	1
kinks	1
metai	1
oligomers	1
peptide	1
priviledged_structures	1
protein_docking	1
selectivity	1
sequence_alignment	1
tm4	1
transducin	1
vasopressin	1

xdeupi's helix [50 articles] Export

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