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xdeupi's rhodopsin [60 articles]

Recent papers added to xdeupi's library classified by the tag rhodopsin. You can also see everyone's rhodopsin.
  • Crystal structure of squid rhodopsin with intracellularly extended cytoplasmic region.
    The Journal of biological chemistry (6 May 2008)
    by Tatsuro Shimamura, Kenji Hiraki, Naoko Takahashi, Tetsuya Hori, Hideo Ago, Katsuyoshi Masuda, Koji Takio, Masaji Ishiguro, Masashi Miyano
    posted to xray structure rhodopsin gpcr cterm crystallography by xdeupi on 2008-05-13 16:19:24 as ** along with 1 group LabCompMed
  • Retinylidene proteins: structures and functions from archaea to humans.
    Annual review of cell and developmental biology, Vol. 16 (2000), pp. 365-392.
    by JL Spudich, CS Yang, KH Jung, EN Spudich
    posted to retinal retinal_binding_proteins review rhodopsin structure by xdeupi on 2008-04-08 11:33:18 as ** along with 1 group LabCompMed
  • Crystal structure of rhodopsin: implications for vision and beyond.
    Current opinion in structural biology, Vol. 11, No. 4. (August 2001), pp. 420-426.
    by T Okada, K Palczewski
    posted to retinal retinal_binding_proteins review rhodopsin structure by xdeupi on 2008-04-08 11:29:02 as ** along with 1 group LabCompMed
  • Efficient coupling of transducin to monomeric rhodopsin in a phospholipid bilayer.
    J Biol Chem (22 November 2007)
    by Matthew R R Whorton, Beata Jastrzebska, Paul S-H S Park, Dimitrios Fotiadis, Andreas Engel, Krzysztof Palczewski, Roger K K Sunahara
    posted to activation dimer gproteins rhodopsin by xdeupi on 2008-03-12 17:12:36 as ** along with 1 person and 1 group gcaltabiano LabCompMed
  • Mapping of contact sites in complex formation between transducin and light-activated rhodopsin by covalent crosslinking: use of a photoactivatable reagent.
    Proc Natl Acad Sci U S A, Vol. 98, No. 9. (24 April 2001), pp. 4877-4882.
    by K Cai, Y Itoh, HG Khorana
    posted to activation active-state gproteins icl3 rhodopsin by xdeupi on 2008-03-12 15:47:55 as **
  • Mapping of contact sites in complex formation between light-activated rhodopsin and transducin by covalent crosslinking: use of a chemically preactivated reagent.
    Proc Natl Acad Sci U S A, Vol. 98, No. 9. (24 April 2001), pp. 4883-4887.
    by Y Itoh, K Cai, HG Khorana
    posted to active-state gproteins icl3 rhodopsin by xdeupi on 2008-03-12 15:46:28 as **
  • Heterotrimeric G protein activation by G-protein-coupled receptors.
    Nat Rev Mol Cell Biol (28 November 2007)
    by William M M Oldham, Heidi E E Hamm
    posted to activation erc_grant gproteins rhodopsin by xdeupi on 2008-03-11 14:30:28 as ** along with 4 people and 2 groups laurabailey dchughes Fritz mingzhi neurolit LabCompMed
  • Transducin activation by nanoscale lipid bilayers containing one and two rhodopsins.
    J Biol Chem, Vol. 282, No. 20. (18 May 2007), pp. 14875-14881.
    by TH Bayburt, AJ Leitz, G Xie, DD Oprian, SG Sligar
    posted to activation dimer lipids rhodopsin by xdeupi on 2008-02-27 11:06:04 as ***
  • Chemistry. Following the flow of energy in biomolecules.
    Science, Vol. 310, No. 5750. (11 November 2005), pp. 980-982.
    by PM Champion
    posted to activation retinal review rhodopsin by xdeupi on 2007-07-30 17:02:29 as **** along with 1 group LabCompMed
  • Proton movement and photointermediate kinetics in rhodopsin mutants.
    Biochemistry, Vol. 45, No. 17. (2 May 2006), pp. 5430-5439.
    by JW Lewis, I Szundi, MA Kazmi, TP Sakmar, DS Kliger
    posted to activation protonation rhodopsin by xdeupi on 2007-07-30 17:00:28 as ** along with 1 group LabCompMed
  • Primary photoprocess in vision: minimal motion to reach the photo- and bathorhodopsin intermediates.
    J Phys Chem B, Vol. 109, No. 18. (12 May 2005), pp. 9104-9110.
    by F Blomgren, S Larsson
    posted to activation retinal rhodopsin theory by xdeupi on 2007-07-30 16:59:24 as ** along with 1 group LabCompMed
  • Photoisomerization mechanism of rhodopsin and 9-cis-rhodopsin revealed by x-ray crystallography.
    Biophys J, Vol. 92, No. 12. (15 June 2007)
    by H Nakamichi, V Buss, T Okada
    posted to activation retinal rhodopsin by xdeupi on 2007-07-30 16:57:47 as ** along with 1 group LabCompMed
  • Coupling of retinal isomerization to the activation of rhodopsin
    PNAS, Vol. 101, No. 27. (6 July 2004), pp. 10048-10053.
    by Ashish B Patel, Evan Crocker, Markus Eilers, Amiram Hirshfeld, Mordechai Sheves, Steven O Smith
    posted to activation active-state nmr retinal rhodopsin by xdeupi on 2007-07-30 15:16:18 as ** along with 1 group LabCompMed
  • A concept for G protein activation by G protein-coupled receptor dimers: the transducin/rhodopsin interface.
    Photochem Photobiol Sci, Vol. 3, No. 6. (June 2004), pp. 628-638.
    by S Filipek, KA Krzysko, D Fotiadis, Y Liang, DA Saperstein, A Engel, K Palczewski
    posted to active-state gproteins modeling rhodopsin structure by xdeupi on 2007-07-11 16:54:09 as ** along with 1 person and 1 group cen4ik LabCompMed
  • Modeling of the complex between transducin and photoactivated rhodopsin, a prototypical G-protein-coupled receptor.
    Biochemistry, Vol. 46, No. 16. (24 April 2007), pp. 4734-4744.
    by GV Nikiforovich, CM Taylor, GR Marshall
    posted to gproteins modeling rhodopsin by xdeupi on 2007-07-11 11:05:58 as ** along with 1 group LabCompMed
  • Effect of different treatments of long-range interactions and sampling conditions in molecular dynamic simulations of rhodopsin embedded in a dipalmitoyl phosphatidylcholine bilayer.
    J Comput Chem (31 January 2007)
    by Arnau Cordomí, Olle Edholm, Juan J J Perez
    posted to dynamics md membrane rhodopsin theory by xdeupi on 2007-06-25 10:30:55 as ** along with 2 people and 1 group patricia arnaucordomi LabCompMed
  • Comparison of stability predictions and simulated unfolding of rhodopsin structures.
    Photochem Photobiol, Vol. 83, No. 2. (r 2007), pp. 351-363.
    by O Tastan, E Yu, M Ganapathiraju, A Aref, AJ Rader, J Klein-Seetharaman
    posted to folding helix membrane_proteins mutation rhodopsin structure transmembrane by xdeupi on 2007-06-25 10:08:49 as ** along with 1 group LabCompMed
  • Structures and spectral signatures of protonated water networks in bacteriorhodopsin.
    Proc Natl Acad Sci U S A, Vol. 104, No. 17. (24 April 2007), pp. 6980-6985.
    by G Mathias, D Marx
    posted to activation gpcr protonation retinal_binding_proteins rhodopsin theory water by xdeupi on 2007-06-11 10:25:44 as *** along with 1 person and 1 group saravan LabCompMed
  • Mapping allosteric connections from the receptor to the nucleotide-binding pocket of heterotrimeric G proteins.
    Proc Natl Acad Sci U S A (26 April 2007)
    by William M M Oldham, Ned Van Eps, Anita M M Preininger, Wayne L L Hubbell, Heidi E E Hamm
    posted to activation cterm gproteins rhodopsin by xdeupi on 2007-06-11 10:14:49 as ** along with 2 people and 1 group laurabailey choonpeng LabCompMed
  • Linkage between the intramembrane H-bond network around aspartic acid 83 and the cytosolic environment of helix 8 in photoactivated rhodopsin.
    J Mol Biol, Vol. 366, No. 4. (2 March 2007), pp. 1129-1141.
    by N Lehmann, U Alexiev, K Fahmy
    posted to activation d250 fluorescence npxxy rhodopsin by xdeupi on 2007-06-05 15:58:33 as ***** along with 1 group LabCompMed
  • Combined solid state and solution NMR studies of alpha,epsilon-15N labeled bovine rhodopsin.
    J Biomol NMR, Vol. 37, No. 4. (April 2007), pp. 303-312.
    by K Werner, I Lehner, HK Dhiman, C Richter, C Glaubitz, H Schwalbe, J Klein-Seetharaman, HG Khorana
    posted to nmr rhodopsin structure by xdeupi on 2007-06-02 19:27:51 as ** along with 2 people and 1 group InesLehner netterpaladin LabCompMed
  • Chromophore Channeling in the G-Protein Coupled Receptor Rhodopsin.
    J Am Chem Soc (15 May 2007)
    by Ting Wang, Yong Duan
    posted to activation agonist amber binding ligands md modeling rhodopsin by xdeupi on 2007-05-21 10:04:04 as ***** along with 1 group LabCompMed
  • Multiple signaling states of G-protein-coupled receptors.
    Pharmacol Rev, Vol. 57, No. 2. (June 2005), pp. 147-161.
    by DM Perez, SS Karnik
    posted to activation agonist gpcr pharmacology review rhodopsin switch by xdeupi on 2007-04-26 14:57:25 as ***** along with 1 group LabCompMed
  • Helix packing moments reveal diversity and conservation in membrane protein structure.
    J Mol Biol, Vol. 337, No. 3. (26 March 2004), pp. 713-729.
    by W Liu, M Eilers, AB Patel, SO Smith
    posted to gpcr helix membrane_proteins rhodopsin sequence ser structure transmembrane by xdeupi on 2007-04-26 13:49:38 as ***** along with 1 group LabCompMed
  • Rhodopsin activation exposes a key hydrophobic binding site for the transducin alpha-subunit C terminus.
    J Biol Chem, Vol. 279, No. 28. (9 July 2004), pp. 29767-29773.
    by JM Janz, DL Farrens
    posted to activation bimane fluorescence rhodopsin tm6 by xdeupi on 2007-04-04 18:32:56 as ** along with 1 group LabCompMed
  • Modeling activated states of GPCRs: the rhodopsin template.
    J Comput Aided Mol Des, Vol. 20, No. 7-8. (g 2006), pp. 437-448.
    by MY Niv, L Skrabanek, M Filizola, H Weinstein
    posted to activation dynamics md rhodopsin by xdeupi on 2007-03-26 10:22:13 as **** along with 1 person and 1 group IrinaMoreira LabCompMed
  • Crystal packing analysis of Rhodopsin crystals.
    J Struct Biol (9 February 2007)
    by David T T Lodowski, David Salom, Isolde Le Trong, David C C Teller, Juan A A Ballesteros, Krzysztof Palczewski, Ronald E E Stenkamp
    posted to crystallography dimer imaging rhodopsin by xdeupi on 2007-03-26 10:05:18 as ** along with 1 group LabCompMed
  • Predisposition of the dark state of rhodopsin to functional changes in structure
    Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 4. (2006), pp. 970-983.
    by Basak Isin, AJ Rader, Harpreet K Dhiman, Judith Klein-Seetharaman, Ivet Bahar
    posted to activation dynamics modeling rhodopsin by xdeupi on 2007-02-26 09:19:19 as **** along with 1 person and 1 group aqeel LabCompMed
  • How a small change in retinal leads to G-protein activation: initial events suggested by molecular dynamics calculations.
    Proteins, Vol. 66, No. 3. (15 February 2007), pp. 559-574.
    by PS Crozier, MJ Stevens, TB Woolf
    posted to activation dynamics md modeling rhodopsin switch by xdeupi on 2007-02-26 09:15:15 as **** along with 1 group LabCompMed
  • Visual rhodopsin sees the light: Structure and mechanism of G protein signaling.
    J Biol Chem (8 February 2007)
    by Kevin D D Ridge, Krzysztof Palczewski
    posted to activation crystallography review rhodopsin by xdeupi on 2007-02-20 10:11:15 as ** along with 1 group LabCompMed
  • A methyl group at C7 of 11-cis-retinal allows chromophore formation but affects rhodopsin activation.
    Vision Res (5 October 2006)
    by Laia Bosch, Arnau Cordomí, Marta Domínguez, Darwin Toledo, Margarita Morillo, Juan J J Pérez, Rosana Alvarez, Angel R R de Lera, Pere Garriga
    posted to activation dynamics md rhodopsin by xdeupi on 2007-02-20 09:56:24 as ** along with 1 person and 1 group arnaucordomi LabCompMed
  • NMR analysis of rhodopsin-transducin interactions.
    Vision Res, Vol. 46, No. 27. (December 2006), pp. 4482-4492.
    by KD Ridge, JP Marino, T Ngo, E Ramon, DM Brabazon, NG Abdulaev
    posted to activation gproteins nmr rhodopsin by xdeupi on 2007-02-20 09:54:49 as ** along with 1 group LabCompMed
  • Relative strength of cation-pi vs salt-bridge interactions: the Gtalpha(340-350) peptide/rhodopsin system.
    J Am Chem Soc, Vol. 128, No. 23. (14 June 2006), pp. 7531-7541.
    by MA Anderson, B Ogbay, R Arimoto, W Sha, OG Kisselev, DP Cistola, GR Marshall
    posted to rhodopsin gproteins cterm cation-pi by xdeupi on 2007-01-15 14:47:20 as ** along with 1 person and 1 group ndoelker LabCompMed
  • G-protein coupled receptor structure.
    Biochim Biophys Acta (10 October 2006)
    by Philip L L Yeagle, Arlene D D Albert
    posted to activation gpcr review rhodopsin structure by xdeupi on 2006-11-17 20:57:15 as ***** along with 4 people and 1 group gcaltabiano merj superpyrin adamsdi LabCompMed
  • Dynamic models of G-protein coupled receptor dimers: indications of asymmetry in the rhodopsin dimer from molecular dynamics simulations in a POPC bilayer.
    J Comput Aided Mol Des (7 November 2006)
    by Marta Filizola, Simon X Wang, Harel Weinstein
    posted to activation dynamics gpcr lipids md membrane rhodopsin structure by xdeupi on 2006-11-14 16:42:29 as ** along with 1 group LabCompMed
  • dummy
    by Dummy
    posted to 5ht1a activation agonist amber amine arrestin b2ar bimane binding cam ccr5 channel chemokine chimera crystallography cterm cxcr1 d250 dimer disease drug dry dynamics ecl2 evolution expression fluorescence folding fret genome gly gpcr gproteins hbond helix helix8 histamine hormone icl3 imaging internalization ionic leukotriene lhr ligands lipids lock loops md membrane modeling mutation n745 n749 nmr no-tag npxxy nterm opioid pharmacology polymorphism pro-kink protonation review rhodopsin s542 sequence ser spin_labeling structure switch test thr thyrotropin tm2 tm3 tm5 tm6 tm7 toggle transmembrane trp txp w648 by xdeupi on 2006-10-30 12:30:16 as ** along with 2 people and 1 group jessicaopacic ivanrt LabCompMed
  • The ring of the rhodopsin chromophore in a hydrophobic activation switch within the binding pocket.
    J Mol Biol, Vol. 343, No. 3. (22 October 2004), pp. 719-730.
    by PJ Spooner, JM Sharples, SC Goodall, PH Bovee-Geurts, MA Verhoeven, J Lugtenburg, AM Pistorius, WJ Degrip, A Watts
    posted to activation nmr rhodopsin switch w648 by xdeupi on 2006-10-26 11:46:48 as **** along with 1 group LabCompMed
  • Local peptide movement in the photoreaction intermediate of rhodopsin.
    Proc Natl Acad Sci U S A, Vol. 103, No. 34. (22 August 2006), pp. 12729-12734.
    by H Nakamichi, T Okada
    posted to activation crystallography retinal rhodopsin structure by xdeupi on 2006-10-26 11:39:03 as ** along with 1 group LabCompMed
  • Crystallographic analysis of primary visual photochemistry.
    Angew Chem Int Ed Engl, Vol. 45, No. 26. (26 June 2006), pp. 4270-4273.
    by H Nakamichi, T Okada
    posted to activation crystallography rhodopsin structure by xdeupi on 2006-10-26 11:36:51 as ** along with 1 group LabCompMed
  • Crystal structure of a photoactivated deprotonated intermediate of rhodopsin.
    Proc Natl Acad Sci U S A (23 October 2006)
    by David Salom, David T T Lodowski, Ronald E E Stenkamp, Isolde Le Trong, Marcin Golczak, Beata Jastrzebska, Tim Harris, Juan A A Ballesteros, Krzysztof Palczewski
    posted to activation crystallography dimer rhodopsin structure by xdeupi on 2006-10-26 09:58:37 as read along with 1 person and 1 group cen4ik LabCompMed
  • Structure and dynamics of dark-state bovine rhodopsin revealed by chemical cross-linking and high-resolution mass spectrometry.
    Protein Sci, Vol. 15, No. 6. (June 2006), pp. 1303-1317.
    by RB Jacobsen, KL Sale, MJ Ayson, P Novak, J Hong, P Lane, NL Wood, GH Kruppa, MM Young, JS Schoeniger
    posted to dynamics gpcr modeling rhodopsin structure by xdeupi on 2006-09-05 10:52:14 as ** along with 1 group LabCompMed
  • Rhodopsin-interacting surface of the transducin gamma subunit.
    Biochemistry, Vol. 45, No. 31. (8 August 2006), pp. 9386-9392.
    by OG Kisselev, MA Downs
    posted to activation cterm gproteins icl3 rhodopsin by xdeupi on 2006-09-05 09:56:16 as ** along with 1 group LabCompMed
  • The three-dimensional structure of bovine rhodopsin determined by electron cryomicroscopy.
    J Biol Chem, Vol. 278, No. 50. (12 December 2003), pp. 50217-50225.
    by A Krebs, PC Edwards, C Villa, J Li, GF Schertler
    posted to crystallography gpcr membrane rhodopsin structure by xdeupi on 2006-07-25 15:17:32 as ** along with 1 group LabCompMed
  • Improvements in G protein-coupled receptor purification yield light stable rhodopsin crystals.
    J Struct Biol (2 June 2006)
    by David Salom, Isolde Le Trong, Ehmke Pohl, Juan A A Ballesteros, Ronald E E Stenkamp, Krzysztof Palczewski, David T T Lodowski
    posted to activation crystallography gpcr rhodopsin by xdeupi on 2006-07-17 16:03:00 as read along with 1 group LabCompMed
  • Picosecond dynamics of G-protein coupled receptor activation in rhodopsin from time-resolved UV resonance Raman spectroscopy.
    Biochemistry, Vol. 42, No. 18. (13 May 2003), pp. 5169-5175.
    by JE Kim, D Pan, RA Mathies
    posted to activation dynamics fluorescence rhodopsin switch thyrotropin toggle w648 by xdeupi on 2006-06-02 12:33:11 as ** along with 1 group LabCompMed
  • Orientation of aromatic residues in rhodopsin. Rotation of one tryptophan upon the meta I to meta II transition afer illumination.
    Photochem Photobiol, Vol. 30, No. 2. (August 1979), pp. 295-299.
    by M Chabre, J Breton
    posted to activation fluorescence rhodopsin switch thyrotropin tm6 toggle w648 by xdeupi on 2006-06-02 12:27:52 as ** along with 1 group LabCompMed
  • Changes in interhelical hydrogen bonding upon rhodopsin activation.
    J Mol Biol, Vol. 347, No. 4. (8 April 2005), pp. 803-812.
    by AB Patel, E Crocker, PJ Reeves, EV Getmanova, M Eilers, HG Khorana, SO Smith
    posted to activation b2ar binding hbond helix ligands nmr pro-kink rhodopsin ser structure switch tm5 tm6 toggle by xdeupi on 2006-06-01 13:51:11 as read along with 1 group LabCompMed
  • A conserved carboxylic acid group mediates light-dependent proton uptake and signaling by rhodopsin.
    J Biol Chem, Vol. 269, No. 39. (30 September 1994), pp. 23879-23881.
    by S Arnis, K Fahmy, KP Hofmann, TP Sakmar
    posted to activation dry gpcr ionic lock mutation protonation rhodopsin tm3 by xdeupi on 2006-05-31 15:55:30 as ** along with 1 group LabCompMed
  • Role of the retinal hydrogen bond network in rhodopsin Schiff base stability and hydrolysis.
    J Biol Chem, Vol. 279, No. 53. (31 December 2004), pp. 55886-55894.
    by JM Janz, DL Farrens
    posted to activation binding rhodopsin by xdeupi on 2006-05-29 11:58:42 as **** along with 1 group LabCompMed
  • Tertiary interactions between transmembrane segments 3 and 5 near the cytoplasmic side of rhodopsin.
    Biochemistry, Vol. 38, No. 37. (14 September 1999), pp. 12033-12040.
    by H Yu, DD Oprian
    posted to activation rhodopsin tm3 tm5 by xdeupi on 2006-03-08 15:15:54 as ** along with 1 group LabCompMed
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