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xdeupi's rhodopsin [60 articles]

Recent papers added to xdeupi's library classified by the tag rhodopsin. You can also see everyone's rhodopsin.
  • Crystal structure of squid rhodopsin with intracellularly extended cytoplasmic region.
    The Journal of biological chemistry (6 May 2008)
    by Tatsuro Shimamura, Kenji Hiraki, Naoko Takahashi, Tetsuya Hori, Hideo Ago, Katsuyoshi Masuda, Koji Takio, Masaji Ishiguro, Masashi Miyano
  • Retinylidene proteins: structures and functions from archaea to humans.
    Annual review of cell and developmental biology, Vol. 16 (2000), pp. 365-392.
    by JL Spudich, CS Yang, KH Jung, EN Spudich
  • Crystal structure of rhodopsin: implications for vision and beyond.
    Current opinion in structural biology, Vol. 11, No. 4. (August 2001), pp. 420-426.
  • Efficient coupling of transducin to monomeric rhodopsin in a phospholipid bilayer.
    J Biol Chem (22 November 2007)
    by Matthew R R Whorton, Beata Jastrzebska, Paul S-H S Park, Dimitrios Fotiadis, Andreas Engel, Krzysztof Palczewski, Roger K K Sunahara
  • Mapping of contact sites in complex formation between transducin and light-activated rhodopsin by covalent crosslinking: use of a photoactivatable reagent.
    Proc Natl Acad Sci U S A, Vol. 98, No. 9. (24 April 2001), pp. 4877-4882.
    by K Cai, Y Itoh, HG Khorana
    posted to activation active-state gproteins icl3 rhodopsin by xdeupi on 2008-03-12 15:47:55 as **
  • Mapping of contact sites in complex formation between light-activated rhodopsin and transducin by covalent crosslinking: use of a chemically preactivated reagent.
    Proc Natl Acad Sci U S A, Vol. 98, No. 9. (24 April 2001), pp. 4883-4887.
    by Y Itoh, K Cai, HG Khorana
    posted to active-state gproteins icl3 rhodopsin by xdeupi on 2008-03-12 15:46:28 as **
  • Heterotrimeric G protein activation by G-protein-coupled receptors.
    Nat Rev Mol Cell Biol (28 November 2007)
    by William M M Oldham, Heidi E E Hamm
  • Transducin activation by nanoscale lipid bilayers containing one and two rhodopsins.
    J Biol Chem, Vol. 282, No. 20. (18 May 2007), pp. 14875-14881.
    by TH Bayburt, AJ Leitz, G Xie, DD Oprian, SG Sligar
    posted to activation dimer lipids rhodopsin by xdeupi on 2008-02-27 11:06:04 as ***
  • Chemistry. Following the flow of energy in biomolecules.
    Science, Vol. 310, No. 5750. (11 November 2005), pp. 980-982.
    by PM Champion
    posted to activation retinal review rhodopsin by xdeupi on 2007-07-30 17:02:29 as **** along with 1 group LabCompMed
  • Proton movement and photointermediate kinetics in rhodopsin mutants.
    Biochemistry, Vol. 45, No. 17. (2 May 2006), pp. 5430-5439.
    by JW Lewis, I Szundi, MA Kazmi, TP Sakmar, DS Kliger
    posted to activation protonation rhodopsin by xdeupi on 2007-07-30 17:00:28 as ** along with 1 group LabCompMed
  • Primary photoprocess in vision: minimal motion to reach the photo- and bathorhodopsin intermediates.
    J Phys Chem B, Vol. 109, No. 18. (12 May 2005), pp. 9104-9110.
    posted to activation retinal rhodopsin theory by xdeupi on 2007-07-30 16:59:24 as ** along with 1 group LabCompMed
  • Photoisomerization mechanism of rhodopsin and 9-cis-rhodopsin revealed by x-ray crystallography.
    Biophys J, Vol. 92, No. 12. (15 June 2007)
    by H Nakamichi, V Buss, T Okada
    posted to activation retinal rhodopsin by xdeupi on 2007-07-30 16:57:47 as ** along with 1 group LabCompMed
  • Coupling of retinal isomerization to the activation of rhodopsin
    PNAS, Vol. 101, No. 27. (6 July 2004), pp. 10048-10053.
    by Ashish B Patel, Evan Crocker, Markus Eilers, Amiram Hirshfeld, Mordechai Sheves, Steven O Smith
  • A concept for G protein activation by G protein-coupled receptor dimers: the transducin/rhodopsin interface.
    Photochem Photobiol Sci, Vol. 3, No. 6. (June 2004), pp. 628-638.
  • Modeling of the complex between transducin and photoactivated rhodopsin, a prototypical G-protein-coupled receptor.
    Biochemistry, Vol. 46, No. 16. (24 April 2007), pp. 4734-4744.
    posted to gproteins modeling rhodopsin by xdeupi on 2007-07-11 11:05:58 as ** along with 1 group LabCompMed
  • Effect of different treatments of long-range interactions and sampling conditions in molecular dynamic simulations of rhodopsin embedded in a dipalmitoyl phosphatidylcholine bilayer.
    J Comput Chem (31 January 2007)
    by Arnau Cordomí, Olle Edholm, Juan J J Perez
  • Comparison of stability predictions and simulated unfolding of rhodopsin structures.
    Photochem Photobiol, Vol. 83, No. 2. (r 2007), pp. 351-363.
  • Structures and spectral signatures of protonated water networks in bacteriorhodopsin.
    Proc Natl Acad Sci U S A, Vol. 104, No. 17. (24 April 2007), pp. 6980-6985.
    by G Mathias, D Marx
  • Mapping allosteric connections from the receptor to the nucleotide-binding pocket of heterotrimeric G proteins.
    Proc Natl Acad Sci U S A (26 April 2007)
    by William M M Oldham, Ned Van Eps, Anita M M Preininger, Wayne L L Hubbell, Heidi E E Hamm
  • Linkage between the intramembrane H-bond network around aspartic acid 83 and the cytosolic environment of helix 8 in photoactivated rhodopsin.
    J Mol Biol, Vol. 366, No. 4. (2 March 2007), pp. 1129-1141.
    by N Lehmann, U Alexiev, K Fahmy
  • Combined solid state and solution NMR studies of alpha,epsilon-15N labeled bovine rhodopsin.
    J Biomol NMR, Vol. 37, No. 4. (April 2007), pp. 303-312.
  • Chromophore Channeling in the G-Protein Coupled Receptor Rhodopsin.
    J Am Chem Soc (15 May 2007)
    by Ting Wang, Yong Duan
  • Multiple signaling states of G-protein-coupled receptors.
    Pharmacol Rev, Vol. 57, No. 2. (June 2005), pp. 147-161.
    by DM Perez, SS Karnik
  • Helix packing moments reveal diversity and conservation in membrane protein structure.
    J Mol Biol, Vol. 337, No. 3. (26 March 2004), pp. 713-729.
    by W Liu, M Eilers, AB Patel, SO Smith
  • Rhodopsin activation exposes a key hydrophobic binding site for the transducin alpha-subunit C terminus.
    J Biol Chem, Vol. 279, No. 28. (9 July 2004), pp. 29767-29773.
    by JM Janz, DL Farrens
  • Modeling activated states of GPCRs: the rhodopsin template.
    J Comput Aided Mol Des, Vol. 20, No. 7-8. (g 2006), pp. 437-448.
  • Crystal packing analysis of Rhodopsin crystals.
    J Struct Biol (9 February 2007)
    by David T T Lodowski, David Salom, Isolde Le Trong, David C C Teller, Juan A A Ballesteros, Krzysztof Palczewski, Ronald E E Stenkamp
    posted to crystallography dimer imaging rhodopsin by xdeupi on 2007-03-26 10:05:18 as ** along with 1 group LabCompMed
  • Predisposition of the dark state of rhodopsin to functional changes in structure
    Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 4. (2006), pp. 970-983.
    by Basak Isin, AJ Rader, Harpreet K Dhiman, Judith Klein-Seetharaman, Ivet Bahar
  • How a small change in retinal leads to G-protein activation: initial events suggested by molecular dynamics calculations.
    Proteins, Vol. 66, No. 3. (15 February 2007), pp. 559-574.
    by PS Crozier, MJ Stevens, TB Woolf
  • Visual rhodopsin sees the light: Structure and mechanism of G protein signaling.
    J Biol Chem (8 February 2007)
    by Kevin D D Ridge, Krzysztof Palczewski
  • A methyl group at C7 of 11-cis-retinal allows chromophore formation but affects rhodopsin activation.
    Vision Res (5 October 2006)
    by Laia Bosch, Arnau Cordomí, Marta Domínguez, Darwin Toledo, Margarita Morillo, Juan J J Pérez, Rosana Alvarez, Angel R R de Lera, Pere Garriga
  • NMR analysis of rhodopsin-transducin interactions.
    Vision Res, Vol. 46, No. 27. (December 2006), pp. 4482-4492.
    by KD Ridge, JP Marino, T Ngo, E Ramon, DM Brabazon, NG Abdulaev
    posted to activation gproteins nmr rhodopsin by xdeupi on 2007-02-20 09:54:49 as ** along with 1 group LabCompMed
  • Relative strength of cation-pi vs salt-bridge interactions: the Gtalpha(340-350) peptide/rhodopsin system.
    J Am Chem Soc, Vol. 128, No. 23. (14 June 2006), pp. 7531-7541.
    by MA Anderson, B Ogbay, R Arimoto, W Sha, OG Kisselev, DP Cistola, GR Marshall
  • G-protein coupled receptor structure.
    Biochim Biophys Acta (10 October 2006)
    by Philip L L Yeagle, Arlene D D Albert
  • Dynamic models of G-protein coupled receptor dimers: indications of asymmetry in the rhodopsin dimer from molecular dynamics simulations in a POPC bilayer.
    J Comput Aided Mol Des (7 November 2006)
    by Marta Filizola, Simon X Wang, Harel Weinstein
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  • The ring of the rhodopsin chromophore in a hydrophobic activation switch within the binding pocket.
    J Mol Biol, Vol. 343, No. 3. (22 October 2004), pp. 719-730.
    posted to activation nmr rhodopsin switch w648 by xdeupi on 2006-10-26 11:46:48 as **** along with 1 group LabCompMed
  • Local peptide movement in the photoreaction intermediate of rhodopsin.
    Proc Natl Acad Sci U S A, Vol. 103, No. 34. (22 August 2006), pp. 12729-12734.
  • Crystallographic analysis of primary visual photochemistry.
    Angew Chem Int Ed Engl, Vol. 45, No. 26. (26 June 2006), pp. 4270-4273.
  • Crystal structure of a photoactivated deprotonated intermediate of rhodopsin.
    Proc Natl Acad Sci U S A (23 October 2006)
    by David Salom, David T T Lodowski, Ronald E E Stenkamp, Isolde Le Trong, Marcin Golczak, Beata Jastrzebska, Tim Harris, Juan A A Ballesteros, Krzysztof Palczewski
  • Structure and dynamics of dark-state bovine rhodopsin revealed by chemical cross-linking and high-resolution mass spectrometry.
    Protein Sci, Vol. 15, No. 6. (June 2006), pp. 1303-1317.
    by RB Jacobsen, KL Sale, MJ Ayson, P Novak, J Hong, P Lane, NL Wood, GH Kruppa, MM Young, JS Schoeniger
    posted to dynamics gpcr modeling rhodopsin structure by xdeupi on 2006-09-05 10:52:14 as ** along with 1 group LabCompMed
  • Rhodopsin-interacting surface of the transducin gamma subunit.
    Biochemistry, Vol. 45, No. 31. (8 August 2006), pp. 9386-9392.
    by OG Kisselev, MA Downs
    posted to activation cterm gproteins icl3 rhodopsin by xdeupi on 2006-09-05 09:56:16 as ** along with 1 group LabCompMed
  • The three-dimensional structure of bovine rhodopsin determined by electron cryomicroscopy.
    J Biol Chem, Vol. 278, No. 50. (12 December 2003), pp. 50217-50225.
    by A Krebs, PC Edwards, C Villa, J Li, GF Schertler
  • Improvements in G protein-coupled receptor purification yield light stable rhodopsin crystals.
    J Struct Biol (2 June 2006)
    by David Salom, Isolde Le Trong, Ehmke Pohl, Juan A A Ballesteros, Ronald E E Stenkamp, Krzysztof Palczewski, David T T Lodowski
  • Picosecond dynamics of G-protein coupled receptor activation in rhodopsin from time-resolved UV resonance Raman spectroscopy.
    Biochemistry, Vol. 42, No. 18. (13 May 2003), pp. 5169-5175.
    by JE Kim, D Pan, RA Mathies
  • Orientation of aromatic residues in rhodopsin. Rotation of one tryptophan upon the meta I to meta II transition afer illumination.
    Photochem Photobiol, Vol. 30, No. 2. (August 1979), pp. 295-299.
    by M Chabre, J Breton
  • Changes in interhelical hydrogen bonding upon rhodopsin activation.
    J Mol Biol, Vol. 347, No. 4. (8 April 2005), pp. 803-812.
    by AB Patel, E Crocker, PJ Reeves, EV Getmanova, M Eilers, HG Khorana, SO Smith
  • A conserved carboxylic acid group mediates light-dependent proton uptake and signaling by rhodopsin.
    J Biol Chem, Vol. 269, No. 39. (30 September 1994), pp. 23879-23881.
    by S Arnis, K Fahmy, KP Hofmann, TP Sakmar
  • Role of the retinal hydrogen bond network in rhodopsin Schiff base stability and hydrolysis.
    J Biol Chem, Vol. 279, No. 53. (31 December 2004), pp. 55886-55894.
    by JM Janz, DL Farrens
    posted to activation binding rhodopsin by xdeupi on 2006-05-29 11:58:42 as **** along with 1 group LabCompMed
  • Tertiary interactions between transmembrane segments 3 and 5 near the cytoplasmic side of rhodopsin.
    Biochemistry, Vol. 38, No. 37. (14 September 1999), pp. 12033-12040.
    by H Yu, DD Oprian
    posted to activation rhodopsin tm3 tm5 by xdeupi on 2006-03-08 15:15:54 as ** along with 1 group LabCompMed
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