xdeupi's sequence [17 articles] Export

Recent papers added to xdeupi's library classified by the tag sequence. You can also see everyone's sequence.

	Comparative sequence and structural analyses of G-protein-coupled receptor crystal structures and implications for molecular models. [My Copy] PloS one, Vol. 4, No. 9. (2009) by Catherine L. Worth, Gunnar Kleinau, Gerd Krause posted to structure sequence review modeling gpcr by xdeupi on 2009-10-06 19:24:07 as
	Using sequence similarity networks for visualization of relationships across diverse protein superfamilies. [My Copy] PloS one, Vol. 4, No. 2. (3 February 2009), e4345. by Holly J. Atkinson, John H. Morris, Thomas E. Ferrin, Patricia C. Babbitt posted to theory sequence phylogeny networks by xdeupi on 2009-10-06 18:08:37 as along with 4 people robert85 Keywan druvus oteri
	New vistas in GPCR 3D structure prediction [My Copy] Journal of Molecular Modeling by Anwar Rayan posted to theory sequence_alignment sequence modeling gpcr by xdeupi on 2009-10-06 17:47:03 as along with 1 person arnaucordomi
	Computing Highly Correlated Positions Using Mutual Information and Graph Theory for G Protein-Coupled Receptors [My Copy] PLoS ONE, Vol. 4, No. 3. (5 March 2009), e4681. by Sarosh N. Fatakia, Stefano Costanzi, Carson C. Chow posted to gpcrs sequence theory by xdeupi on 2009-06-08 13:52:17 as along with 1 person and 1 group sobolevnrm baker-group
	The relation between the divergence of sequence and structure in proteins. [My Copy] The EMBO journal, Vol. 5, No. 4. (April 1986), pp. 823-826. by C. Chothia, A. M. Lesk posted to sequence structure theory by xdeupi on 2008-04-02 15:48:23 as along with 14 people and 6 groups dfdong martainn ucbcjbm bertelsen semin sgoetz cen4ik ana pansapiens jwm Einat marcius ffranca insectopalo structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	Helix packing moments reveal diversity and conservation in membrane protein structure. [My Copy] J Mol Biol, Vol. 337, No. 3. (26 March 2004), pp. 713-729. by W. Liu, M. Eilers, A. B. Patel, S. O. Smith posted to gpcr helix membrane_proteins rhodopsin sequence ser structure transmembrane by xdeupi on 2007-04-26 13:49:38 as along with 1 group LabCompMed
	From Interactions of Single Transmembrane Helices to Folding of alpha-Helical Membrane Proteins: Analyzing Transmembrane Helix-Helix Interactions in Bacteria. [My Copy] Curr Protein Pept Sci, Vol. 8, No. 1. (February 20067), pp. 45-61. by Dirk Schneider, Carmen Finger, Alexander Prodöhl, Thomas Volkmer posted to helix membrane_proteins review sequence structure transmembrane by xdeupi on 2007-02-26 09:06:23 as along with 1 group LabCompMed
	dummy [My Copy] by Dummy posted to 5ht1a activation agonist amber amine arrestin b2ar bimane binding cam ccr5 channel chemokine chimera crystallography cterm cxcr1 d250 dimer disease drug dry dynamics ecl2 evolution expression fluorescence folding fret genome gly gpcr gproteins hbond helix helix8 histamine hormone icl3 imaging internalization ionic leukotriene lhr ligands lipids lock loops md membrane modeling mutation n745 n749 nmr npxxy nterm opioid pharmacology polymorphism pro-kink protonation review rhodopsin s542 sequence ser spin_labeling structure switch thr thyrotropin tm2 tm3 tm5 tm6 tm7 toggle transmembrane trp txp w648 by xdeupi on 2006-10-30 12:30:16 as along with 2 people and 1 group jessicaopacic ivanrt LabCompMed
	An amino acid "transmembrane tendency" scale that approaches the theoretical limit to accuracy for prediction of transmembrane helices: relationship to biological hydrophobicity. [My Copy] Protein Sci, Vol. 15, No. 8. (August 2006), pp. 1987-2001. by G. Zhao, E. London posted to helix sequence transmembrane by xdeupi on 2006-10-27 09:46:58 as along with 1 group LabCompMed
	Helix-packing motifs in membrane proteins. [My Copy] Proc Natl Acad Sci U S A (5 September 2006) by R F S F. Walters, W F F. Degrado posted to folding helix membrane modeling sequence structure transmembrane by xdeupi on 2006-09-13 10:25:08 as along with 5 people and 1 group hc5428 thaliana dgront sebk chgjb LabCompMed
	How strongly do sequence conservation patterns and empirical scales correlate with exposure patterns of transmembrane helices of membrane proteins? [My Copy] Biopolymers (12 July 2006) by Yungki Park, Volkhard Helms posted to helix sequence transmembrane by xdeupi on 2006-07-24 11:46:23 as along with 1 person and 1 group thaliana LabCompMed
	A two-entropies analysis to identify functional positions in the transmembrane region of class A G protein-coupled receptors [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 4. (1 June 2006), pp. 1018-1030. by Kai Ye, Eric-Wubbo M. Lameijer, Margot W. Beukers, Adriaan P. Ijzerman posted to activation gpcr sequence transmembrane by xdeupi on 2006-07-24 10:21:33 as along with 2 people and 1 group cen4ik cat_worth LabCompMed
	The G-Protein-Coupled Receptors in the Human Genome Form Five Main Families. Phylogenetic Analysis, Paralogon Groups, and Fingerprints [My Copy] Mol Pharmacol, Vol. 63, No. 6. (1 June 2003), pp. 1256-1272. by Robert Fredriksson, Malin C. Lagerstrom, Lars-Gustav Lundin, Helgi B. Schioth posted to evolution genome gpcr sequence by xdeupi on 2006-05-29 12:28:55 as along with 3 people and 1 group LaetitiaBigot happy_manatee adamsdi LabCompMed
	Folding of helical membrane proteins: the role of polar, GxxxG-like and proline motifs. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 4. (August 2004), pp. 465-479. by A. Senes, D. E. Engel, W. F. DeGrado posted to folding gly membrane pro-kink sequence ser structure transmembrane by xdeupi on 2006-05-22 10:55:10 as along with 1 person and 1 group thaliana LabCompMed
	The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 4. (27 January 2004), pp. 959-963. by S. Yohannan, S. Faham, D. Yang, J. P. Whitelegge, J. U. Bowie posted to evolution helix lmc_101 mutation pro-kink sequence structure transmembrane by xdeupi on 2006-05-15 15:16:00 as along with 1 person and 1 group thaliana LabCompMed
	Evolutionary trace of G protein-coupled receptors reveals clusters of residues that determine global and class-specific functions. [My Copy] J Biol Chem, Vol. 279, No. 9. (27 February 2004), pp. 8126-8132. by S. Madabushi, A. K. Gross, A. Philippi, E. C. Meng, T. G. Wensel, O. Lichtarge posted to activation binding gpcr sequence switch by xdeupi on 2005-11-01 20:03:29 as along with 2 people and 1 group gbart sriram_s LabCompMed
	Sequence analyses of G-protein-coupled receptors: similarities to rhodopsin. [My Copy] Biochemistry, Vol. 42, No. 10. (18 March 2003), pp. 2759-2767. by T. Mirzadegan, G. Benkö, S. Filipek, K. Palczewski posted to activation gpcr lmc_101 rhodopsin sequence by xdeupi on 2005-11-01 19:50:18 as along with 1 group LabCompMed

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activation	173
gpcr	112
structure	89
rhodopsin	79
review	65
modeling	62
b2ar	58
dynamics	56
helix	50
transmembrane	47
agonist	46
theory	45
binding	45
ligands	41
drug	36
md	35
switch	34
membrane_proteins	31
pharmacology	31
crystallography	30
nmr	30
membrane	26
gproteins	24
dimer	20
fluorescence	18
sequence	17
ser	17
pro-kink	15
active-state	15
genome	14
loops	14
folding	14
fret	14
flexibility	13
tm6	12
disease	12
cterm	11
mutation	11
retinal	11
evolution	10
amber	10
toggle	10
energy_landscape	10
neurokinin	9
docking	9
kinetics	9
lipids	9
arrestin	9
tm5	9
imaging	8
gpcrs	8
chemokine	8
hbond	8
helix8	8
bimane	7
plasticity	7
tm3	7
lmc_101	7
icl3	7
cancer	7
protonation	7
w648	7
ecl2	7
ionic	7
channel	7
gly	7
conformational_changes	6
tm2	6
ccr5	6
cation-pi	6
internalization	6
cys_scanning	6
xray	6
npxxy	6
d250	6
opioid	6
thyrotropin	6
binding_kinetics	5
expression	5
dimerization	5
polymorphism	5
amine	5
thr	5
lock	5
trp	5
dry	5
spectroscopy	5
cam	4
nterm	4
water	4
cholesterol	4
biased_agonism	4
tm7	4
hormone	4
pathway	4
antagonist	4
n749	4
disorder	4
angiotensin	4
toac	3
webserver	3
histamine	3
oligomerization	3
grk	3
cxcr1	3
n745	3
spin_labeling	3
networks	2
leukotriene	2
solvation	2
txp	2
s542	2
tm1	2
crosslinking	2
phylogeny	2
lhr	2
chimera	2
tmhs	2
5ht1a	2
em	2
pathways	2
gaba	1
tm4	1
selectivity	1
binding_site	1
oligomers	1
kinase	1
class_c	1
transducin	1
peptide	1
b1ar	1
sequence_alignment	1
vasopressin	1
priviledged_structures	1
membrane_protein	1
efficacy	1
kinks	1
protein_docking	1
inverse_agonist	1
induced_fit	1
metai	1

xdeupi's sequence [17 articles] Export

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