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	Identification of two distinct inactive conformations of the beta2-adrenergic receptor reconciles structural and biochemical observations. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 12. (24 March 2009), pp. 4689-4694. by Ron O. Dror, Daniel H. Arlow, David W. Borhani, Morten Ø. Jensen, Stefano Piana, David E. Shaw posted to theory structure modeling md flexibility dynamics b2ar activation by xdeupi on 2009-10-08 11:13:04 as along with 2 people dimka agrossfield
	Comparative sequence and structural analyses of G-protein-coupled receptor crystal structures and implications for molecular models. [My Copy] PloS one, Vol. 4, No. 9. (2009) by Catherine L. Worth, Gunnar Kleinau, Gerd Krause posted to structure sequence review modeling gpcr by xdeupi on 2009-10-06 19:24:07 as
	Conserved waters mediate structural and functional activation of family A (rhodopsin-like) G protein-coupled receptors. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 21. (26 May 2009), pp. 8555-8560. by Thomas E. Angel, Mark R. Chance, Krzysztof Palczewski posted to water structure review gpcr activation by xdeupi on 2009-10-06 18:17:17 as along with 1 person agrossfield
	Structural and kinetic modeling of an activating helix switch in the rhodopsin-transducin interface. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 26. (30 June 2009), pp. 10660-10665. by Patrick Scheerer, Martin Heck, Andrean Goede, et al.Jung Hee H. Park, Hui-Woog W. Choe, Oliver P. Ernst, Klaus Peter P. Hofmann, Peter W. Hildebrand posted to transducin switch structure rhodopsin modeling kinetics helix activation by xdeupi on 2009-10-06 18:16:43 as
	Comparative analysis of GPCR crystal structures. [My Copy] Photochemistry and photobiology, Vol. 85, No. 2. (r 2009), pp. 425-430. by David T. Lodowski, Thomas E. Angel, Krzysztof Palczewski posted to structure review gpcr by xdeupi on 2009-10-06 18:07:41 as
	Influence of the g- conformation of Ser and Thr on the structure of transmembrane helices. [My Copy] Journal of structural biology (17 September 2009) by Xavier Deupi, Mireia Olivella, Arantxa Sanz, Nicole Dölker, Mercedes Campillo, Leonardo Pardo posted to tm5 theory structure ser plasticity helix hbond flexibility dynamics amber activation by xdeupi on 2009-09-25 14:15:01 as
	G-protein-coupled receptor structures were not built in a day [My Copy] Protein Science, Vol. 18, No. 7. (20 May 2009), pp. 1335-1342. by Tracy M. Blois, James U. Bowie posted to gpcrs review structure by xdeupi on 2009-06-25 16:34:38 as along with 2 people and 1 group lees arnaucordomi Orengo Group Journal Picks
	Predicting structurally conserved contacts for homologous proteins using sequence conservation filters [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 77, No. 2. (20 April 2009), pp. 448-453. by Mayako Michino, Charles L. Brooks posted to gpcr structure theory by xdeupi on 2009-06-09 15:46:32 as along with 1 person and 1 group AliC Orengo Group Journal Picks
	X-ray structure breakthroughs in the GPCR transmembrane region. [My Copy] Biochemical pharmacology, Vol. 78, No. 1. (1 July 2009), pp. 11-20. by Sid Topiol, Michael Sabio posted to gpcr review structure by xdeupi on 2009-06-09 15:41:31 as along with 1 person diod
	Role of helix 8 in G protein-coupled receptors based on structure-function studies on the type 1 angiotensin receptor. [My Copy] Molecular and cellular endocrinology, Vol. 302, No. 2. (29 April 2009), pp. 118-127. by J. Huynh, W. G. Thomas, M. I. Aguilar, L. K. Pattenden posted to activation angiotensin helix8 structure by xdeupi on 2009-06-09 15:33:42 as
	Inter-helical Interactions in Membrane Proteins: Analysis Based on the Local Backbone Geometry and the Side Chain Interactions. [My Copy] Journal of biomolecular structure & dynamics, Vol. 26, No. 6. (June 2009), pp. 719-730. by A. N. Jha, S. Vishveshwara posted to dimer helix membrane_proteins structure theory transmembrane by xdeupi on 2009-05-06 09:54:37 as
	Wide turn diversity in protein transmembrane helices implications for G-protein-coupled receptor and other polytopic membrane protein structure and function. [My Copy] Molecular pharmacology, Vol. 73, No. 4. (April 2008), pp. 1092-1104. by R. Peter Riek, Angela A. Finch, Gillian E. Begg, Robert M. Graham posted to flexibility helix membrane_proteins modeling pro-kink ser structure theory thr transmembrane by xdeupi on 2009-04-17 11:47:42 as
	Using relaxation dispersion NMR spectroscopy to determine structures of excited, invisible protein states [My Copy] Journal of Biomolecular NMR, Vol. 41, No. 3. (1 July 2008), pp. 113-120. by D. Hansen, Pramodh Vallurupalli, Lewis Kay posted to activation active-state dynamics nmr plasticity spectroscopy structure by xdeupi on 2009-03-30 15:26:38 as along with 1 person kevinemamy
	G protein-coupled receptors show unusual patterns of intrinsic unfolding [My Copy] Protein Engineering, Design and Selection, Vol. 18, No. 2. (February 2005), pp. 103-110. by Veli-Pekka Jaakola, Jaime Prilusky, Joel L. Sussman, Adrian Goldman posted to cterm disorder dynamics flexibility folding icl3 loops modeling structure by xdeupi on 2009-03-27 09:41:46 as
	Automation of NMR structure determination of proteins. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 5. (October 2004), pp. 547-553. by A. S. Altieri, R. A. Byrd posted to dynamics nmr review structure by xdeupi on 2009-03-10 15:30:11 as along with 2 people kumar_physics apaydin
	Simultaneous determination of protein structure and dynamics [My Copy] Nature, Vol. 433, No. 7022. (13 January 2005), pp. 128-132. by Kresten Lindorff-Larsen, Robert B. Best, Mark A. Depristo, Christopher M. Dobson, Michele Vendruscolo posted to dynamics nmr structure by xdeupi on 2009-03-10 14:48:36 as along with 15 people and 3 groups Diego_Prada A_Coletta_Thesis karbak apaydin barry lillekatt baaden lna dgront allmensch daevans rsantana jlh64 biehl rph Structural Biology Group TorVergata structural_bioinformatics Bioinformatics
	Crystal structure of the ligand-free G-protein-coupled receptor opsin [My Copy] Nature, Vol. 454, No. 7201. (10 July 2008), pp. 183-187. by Jung H. Park, Patrick Scheerer, Klaus P. Hofmann, Hui-Woog Choe, Oliver P. Ernst posted to activation active-state crystallography gpcr npxxy pro-kink rhodopsin structure by xdeupi on 2009-01-28 10:28:21 as along with 2 people reyez mrasch
	Crystal structure of opsin in its G-protein-interacting conformation [My Copy] Nature, Vol. 455, No. 7212. (2008), pp. 497-502. by Patrick Scheerer, Jung H. Park, Peter W. Hildebrand, et al.Yong J. Kim, Norbert Krausz, Hui-Woog Choe, Klaus P. Hofmann, Oliver P. Ernst posted to activation active-state crystallography dry gpcr rhodopsin structure by xdeupi on 2009-01-28 09:53:31 as along with 5 people and 1 group IrinaMoreira zwang reyez stajich neils Mycology
	A specific cholesterol binding site is established by the 2.8 A structure of the human beta2-adrenergic receptor. [My Copy] Structure (London, England : 1993), Vol. 16, No. 6. (June 2008), pp. 897-905. by M. A. Hanson, V. Cherezov, M. T. Griffith, et al.C. B. Roth, V. P. Jaakola, E. Y. Chien, J. Velasquez, P. Kuhn, R. C. Stevens posted to b2ar cholesterol crystallography drug ligands structure by xdeupi on 2009-01-09 12:05:17 as along with 1 person and 1 group merj LabCompMed
	Investigation of transmembrane proteins using a computational approach. [My Copy] BMC genomics, Vol. 9 Suppl 1 (2008) by J. Y. Yang, M. Q. Yang, A. K. Dunker, Y. Deng, X. Huang posted to disorder gpcr loops membrane_proteins structure theory transmembrane by xdeupi on 2008-10-20 22:23:57 as
	The 2.6 Angstrom Crystal Structure of a Human A2A Adenosine Receptor Bound to an Antagonist [My Copy] Science (2 October 2008), 1164772. by Veli-Pekka Jaakola, Mark T. Griffith, Michael A. Hanson, et al.Vadim Cherezov, Ellen Y. Chien, Robert J. Lane, Adriaan P. Ijzerman, Raymond C. Stevens posted to binding crystallography docking gpcr ligands structure xray by xdeupi on 2008-10-15 10:02:26 as along with 1 person and 1 group cen4ik LabCompMed
	Structure of a β1-adrenergic G-protein-coupled receptor [My Copy] Nature (25 June 2008) by Tony Warne, Maria J. Serrano-Vega, Jillian G. Baker, et al.Rouslan Moukhametzianov, Patricia C. Edwards, Richard Henderson, Andrew G. W. Leslie, Christopher G. Tate, Gebhard F. X. Schertler posted to b2ar binding docking drug ligands structure xray by xdeupi on 2008-09-16 10:15:17 as along with 2 people and 2 groups merj TonyIvetac LabCompMed McCammon
	Proline-induced distortions of transmembrane helices. [My Copy] J Mol Biol, Vol. 323, No. 5. (8 November 2002), pp. 951-960. by F. S. Cordes, J. N. Bright, M. S. Sansom posted to activation helix membrane_proteins pro-kink structure theory transmembrane by xdeupi on 2008-05-27 11:58:27 as along with 1 person thaliana
	Analysis of side-chain rotamers in transmembrane proteins. [My Copy] Biophysical journal, Vol. 87, No. 5. (November 2004), pp. 3460-3469. by A. K. Chamberlain, J. U. Bowie posted to flexibility hbond helix membrane_proteins ser structure thr transmembrane by xdeupi on 2008-05-15 11:35:47 as along with 1 person and 1 group carlk LabCompMed
	Crystal structure of squid rhodopsin with intracellularly extended cytoplasmic region. [My Copy] The Journal of biological chemistry (6 May 2008) by Tatsuro Shimamura, Kenji Hiraki, Naoko Takahashi, et al.Tetsuya Hori, Hideo Ago, Katsuyoshi Masuda, Koji Takio, Masaji Ishiguro, Masashi Miyano posted to crystallography cterm gpcr rhodopsin structure xray by xdeupi on 2008-05-13 16:19:24 as along with 1 group LabCompMed
	Transmembrane helix uniformity examined by spectral mapping of torsion angles. [My Copy] Structure (London, England : 1993), Vol. 16, No. 5. (May 2008), pp. 787-797. by R. C. Page, S. Kim, T. A. Cross posted to hbond helix structure transmembrane by xdeupi on 2008-05-13 16:04:28 as
	Uniformity, ideality, and hydrogen bonds in transmembrane alpha-helices. [My Copy] Biophysical journal, Vol. 83, No. 4. (October 2002), pp. 2084-2095. by S. Kim, T. A. Cross posted to flexibility hbond helix structure transmembrane by xdeupi on 2008-05-13 16:00:40 as
	Computational analysis of membrane proteins: genomic occurrence, structure prediction and helix interactions. [My Copy] Q Rev Biophys, Vol. 37, No. 2. (May 2004), pp. 121-146. by U. Lehnert, Y. Xia, T. E. Royce, et al.C. S. Goh, Y. Liu, A. Senes, H. Yu, Z. L. Zhang, D. M. Engelman, M. Gerstein posted to membrane_proteins review structure theory transmembrane by xdeupi on 2008-05-01 19:11:17 as along with 1 person thaliana
	Stable interactions between the transmembrane domains of the adenosine A<SUB><FONT SIZE='-1'>2A</FONT></SUB> receptor [My Copy] Protein Science, Vol. 17, No. 7. (23 April 2008), pp. 1188-1199. by Damien Thévenin, Tzvetana Lazarova posted to folding gpcr structure transmembrane by xdeupi on 2008-04-28 11:00:29 as along with 1 person IrinaMoreira
	Transmembrane proteins in the Protein Data Bank: identification and classification. [My Copy] Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 2964-2972. by G. E. Tusnády, Z. Dosztányi, I. Simon posted to helix lmc_101 membrane_proteins structure by xdeupi on 2008-04-08 13:55:52 as along with 4 people and 1 group kallberg chrn sebk viktor21614 LabCompMed
	Retinylidene proteins: structures and functions from archaea to humans. [My Copy] Annual review of cell and developmental biology, Vol. 16 (2000), pp. 365-392. by J. L. Spudich, C. S. Yang, K. H. Jung, E. N. Spudich posted to retinal review rhodopsin structure by xdeupi on 2008-04-08 11:33:18 as along with 1 group LabCompMed
	Crystal structure of rhodopsin: implications for vision and beyond. [My Copy] Current opinion in structural biology, Vol. 11, No. 4. (August 2001), pp. 420-426. by T. Okada, K. Palczewski posted to retinal review rhodopsin structure by xdeupi on 2008-04-08 11:29:02 as along with 1 group LabCompMed
	The relation between the divergence of sequence and structure in proteins. [My Copy] The EMBO journal, Vol. 5, No. 4. (April 1986), pp. 823-826. by C. Chothia, A. M. Lesk posted to sequence structure theory by xdeupi on 2008-04-02 15:48:23 as along with 14 people and 6 groups dfdong martainn ucbcjbm bertelsen semin sgoetz cen4ik ana pansapiens jwm Einat marcius ffranca insectopalo structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	A concept for G protein activation by G protein-coupled receptor dimers: the transducin/rhodopsin interface. [My Copy] Photochem Photobiol Sci, Vol. 3, No. 6. (June 2004), pp. 628-638. by S. Filipek, K. A. Krzysko, D. Fotiadis, et al.Y. Liang, D. A. Saperstein, A. Engel, K. Palczewski posted to active-state gproteins modeling rhodopsin structure by xdeupi on 2007-07-11 16:54:09 as along with 1 person and 1 group cen4ik LabCompMed
	Refinement of a homology model of the mu-opioid receptor using distance constraints from intrinsic and engineered zinc-binding sites. [My Copy] Biochemistry, Vol. 43, No. 27. (13 July 2004), pp. 8700-8710. by C. B. Fowler, I. D. Pogozheva, H. LeVine, H. I. Mosberg posted to active-state modeling opioid structure theory by xdeupi on 2007-07-11 16:51:53 as along with 1 person and 1 group merj LabCompMed
	Complex of an active mu-opioid receptor with a cyclic peptide agonist modeled from experimental constraints. [My Copy] Biochemistry, Vol. 43, No. 50. (21 December 2004), pp. 15796-15810. by C. B. Fowler, I. D. Pogozheva, A. L. Lomize, H. LeVine, H. I. Mosberg posted to active-state gproteins modeling opioid structure by xdeupi on 2007-07-11 16:50:15 as along with 1 group LabCompMed
	Formation of Transmembrane Helices In Vivo--Is Hydrophobicity All that Matters? [My Copy] J. Gen. Physiol., Vol. 129, No. 5. (30 April 2007), pp. 353-356. by Gunnar von Heijne posted to helix membrane_proteins review structure transmembrane by xdeupi on 2007-06-29 21:20:58 as along with 2 people and 1 group hc5428 thaliana LabCompMed
	Critical Role for the Second Extracellular Loop in the Binding of Both Orthosteric and Allosteric G Protein-coupled Receptor Ligands [My Copy] J. Biol. Chem., Vol. 282, No. 35. (31 August 2007), pp. 25677-25686. by Vimesh A. Avlani, Karen J. Gregory, Craig J. Morton, Michael W. Parker, Patrick M. Sexton, Arthur Christopoulos posted to activation binding ecl2 ligands loops structure by xdeupi on 2007-06-29 21:12:42 as along with 1 group LabCompMed
	G-protein-coupled receptor signalling through protein networks. [My Copy] Biochem Soc Trans, Vol. 35, No. Pt 1. (February 2007), pp. 23-27. by A. D. Strosberg, C. Nahmias posted to b2ar gpcr pharmacology review structure by xdeupi on 2007-06-29 21:10:57 as along with 1 group LabCompMed
	Comparison of stability predictions and simulated unfolding of rhodopsin structures. [My Copy] Photochem Photobiol, Vol. 83, No. 2. (r 2007), pp. 351-363. by O. Tastan, E. Yu, M. Ganapathiraju, A. Aref, A. J. Rader, J. Klein-Seetharaman posted to folding helix membrane_proteins mutation rhodopsin structure transmembrane by xdeupi on 2007-06-25 10:08:49 as along with 1 group LabCompMed
	Refinement of Protein Structures by Iterative Comparative Modeling and CryoEM Density Fitting [My Copy] Journal of Molecular Biology, Vol. 357, No. 5. (14 April 2006), pp. 1655-1668. by Maya Topf, Matthew L. Baker, Marc A. Marti-Renom, Wah Chiu, Andrej Sali posted to crystallography em modeling structure theory by xdeupi on 2007-06-12 11:28:16 as along with 1 group LabCompMed
	Combined solid state and solution NMR studies of alpha,epsilon-15N labeled bovine rhodopsin. [My Copy] J Biomol NMR, Vol. 37, No. 4. (April 2007), pp. 303-312. by K. Werner, I. Lehner, H. K. Dhiman, et al.C. Richter, C. Glaubitz, H. Schwalbe, J. Klein-Seetharaman, H. G. Khorana posted to nmr rhodopsin structure by xdeupi on 2007-06-02 19:27:51 as along with 1 person and 1 group InesLehner LabCompMed
	An automated approach for clustering an ensemble of NMR-derived protein structures into conformationally related subfamilies [My Copy] Protein Eng., Vol. 9, No. 11. (1996), pp. 1063-1065. by Lawrence A. Kelley, Stephen P. Gardner, Michael J. Sutcliffe posted to dynamics helix md modeling structure theory by xdeupi on 2007-05-31 10:31:28 as along with 1 group LabCompMed
	Structural models of class a g protein-coupled receptors as a tool for drug design: insights on transmembrane bundle plasticity. [My Copy] Curr Top Med Chem, Vol. 7, No. 10. (2007), pp. 999-1006. by X. Deupi, N. Dölker, M. L. López-Rodríguez, M. Campillo, J. A. Ballesteros, L. Pardo posted to binding gpcr modeling plasticity structure by xdeupi on 2007-05-28 08:51:54 as along with 1 group LabCompMed
	Computational prediction of atomic structures of helical membrane proteins aided by EM maps. [My Copy] Biophys J (11 May 2007) by Julio A A. Kovacs, Mark Yeager, Ruben Abagyan posted to crystallography em membrane_proteins modeling structure by xdeupi on 2007-05-21 09:41:00 as along with 1 person and 1 group thaliana LabCompMed
	Determining membrane protein structures: still a challenge! [My Copy] Trends Biochem Sci (2 May 2007) by Jean-Jacques J. Lacapère, Eva Pebay-Peyroula, Jean-Michel M. Neumann, Catherine Etchebest posted to crystallography dynamics membrane_proteins nmr review structure by xdeupi on 2007-05-15 12:52:21 as along with 1 person and 1 group gcaltabiano LabCompMed
	Helix packing moments reveal diversity and conservation in membrane protein structure. [My Copy] J Mol Biol, Vol. 337, No. 3. (26 March 2004), pp. 713-729. by W. Liu, M. Eilers, A. B. Patel, S. O. Smith posted to gpcr helix membrane_proteins rhodopsin sequence ser structure transmembrane by xdeupi on 2007-04-26 13:49:38 as along with 1 group LabCompMed
	Peptide design and structural characterization of a GPCR loop mimetic. [My Copy] Biopolymers (18 April 2007) by Truc-Chi T C. Pham, Richard W W. Kriwacki, Abby L L. Parrill posted to gpcr loops modeling structure by xdeupi on 2007-04-23 10:24:23 as along with 1 group LabCompMed
	Pharmacogenomic and structural analysis of constitutive g protein-coupled receptor activity. [My Copy] Annu Rev Pharmacol Toxicol, Vol. 47 (2007), pp. 53-87. by M. J. Smit, H. F. Vischer, R. A. Bakker, et al.A. Jongejan, H. Timmerman, L. Pardo, R. Leurs posted to activation disease gpcr modeling review structure switch by xdeupi on 2007-04-17 12:35:15 as along with 1 group LabCompMed
	Atomic-level characterization of disordered protein ensembles [My Copy] Current Opinion in Structural Biology In Folding and binding / Protein-nucleic interactions, Vol. 17, No. 1. (February 2007), pp. 3-14. by Tanja Mittag, Julie D. Forman-Kay posted to crystallography cterm disorder folding icl3 modeling nmr structure by xdeupi on 2007-03-27 16:17:12 as along with 6 people and 1 group yxue flbarroso apaydin cactus biehl allmensch LabCompMed

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activation	173
gpcr	112
structure	89
rhodopsin	79
review	65
modeling	62
b2ar	58
dynamics	56
helix	50
transmembrane	47
agonist	46
binding	44
theory	43
ligands	41
drug	36
md	35
switch	34
membrane_proteins	31
pharmacology	31
crystallography	30
nmr	30
membrane	26
gproteins	24
dimer	20
fluorescence	18
sequence	17
ser	17
active-state	15
pro-kink	15
folding	14
fret	14
genome	14
loops	14
flexibility	13
disease	12
tm6	12
cterm	11
mutation	11
retinal	11
amber	10
energy_landscape	10
evolution	10
toggle	10
docking	9
kinetics	9
lipids	9
neurokinin	9
tm5	9
arrestin	8
chemokine	8
gpcrs	8
hbond	8
helix8	8
imaging	8
bimane	7
cancer	7
channel	7
ecl2	7
gly	7
icl3	7
ionic	7
lmc_101	7
plasticity	7
protonation	7
tm3	7
w648	7
cation-pi	6
ccr5	6
cys_scanning	6
d250	6
internalization	6
npxxy	6
opioid	6
thyrotropin	6
tm2	6
xray	6
amine	5
binding_kinetics	5
conformational_changes	5
dimerization	5
dry	5
expression	5
lock	5
polymorphism	5
spectroscopy	5
thr	5
trp	5
antagonist	4
cam	4
cholesterol	4
disorder	4
hormone	4
n749	4
nterm	4
pathway	4
tm7	4
water	4
angiotensin	3
biased_agonism	3
cxcr1	3
grk	3
histamine	3
n745	3
oligomerization	3
spin_labeling	3
toac	3
webserver	3
5ht1a	2
chimera	2
crosslinking	2
em	2
leukotriene	2
lhr	2
networks	2
pathways	2
phylogeny	2
s542	2
solvation	2
tm1	2
tmhs	2
txp	2
b1ar	1
binding_site	1
class_c	1
efficacy	1
gaba	1
induced_fit	1
inverse_agonist	1
kinase	1
kinks	1
metai	1
oligomers	1
peptide	1
priviledged_structures	1
protein_docking	1
selectivity	1
sequence_alignment	1
tm4	1
transducin	1
vasopressin	1

xdeupi's structure [89 articles] Export

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