xdeupi's transmembrane [47 articles] Export

Recent papers added to xdeupi's library classified by the tag transmembrane. You can also see everyone's transmembrane.

	Inter-helical Interactions in Membrane Proteins: Analysis Based on the Local Backbone Geometry and the Side Chain Interactions. [My Copy] Journal of biomolecular structure & dynamics, Vol. 26, No. 6. (June 2009), pp. 719-730. by A. N. Jha, S. Vishveshwara posted to dimer helix membrane_proteins structure theory transmembrane by xdeupi on 2009-05-06 09:54:37 as
	Wide turn diversity in protein transmembrane helices implications for G-protein-coupled receptor and other polytopic membrane protein structure and function. [My Copy] Molecular pharmacology, Vol. 73, No. 4. (April 2008), pp. 1092-1104. by R. Peter Riek, Angela A. Finch, Gillian E. Begg, Robert M. Graham posted to flexibility helix membrane_proteins modeling pro-kink ser structure theory thr transmembrane by xdeupi on 2009-04-17 11:47:42 as
	Investigation of transmembrane proteins using a computational approach. [My Copy] BMC genomics, Vol. 9 Suppl 1 (2008) by J. Y. Yang, M. Q. Yang, A. K. Dunker, Y. Deng, X. Huang posted to disorder gpcr loops membrane_proteins structure theory transmembrane by xdeupi on 2008-10-20 22:23:57 as
	Proline-induced distortions of transmembrane helices. [My Copy] J Mol Biol, Vol. 323, No. 5. (8 November 2002), pp. 951-960. by F. S. Cordes, J. N. Bright, M. S. Sansom posted to activation helix membrane_proteins pro-kink structure theory transmembrane by xdeupi on 2008-05-27 11:58:27 as along with 1 person thaliana
	Analysis of side-chain rotamers in transmembrane proteins. [My Copy] Biophysical journal, Vol. 87, No. 5. (November 2004), pp. 3460-3469. by A. K. Chamberlain, J. U. Bowie posted to flexibility hbond helix membrane_proteins ser structure thr transmembrane by xdeupi on 2008-05-15 11:35:47 as along with 1 person and 1 group carlk LabCompMed
	Transmembrane helix uniformity examined by spectral mapping of torsion angles. [My Copy] Structure (London, England : 1993), Vol. 16, No. 5. (May 2008), pp. 787-797. by R. C. Page, S. Kim, T. A. Cross posted to hbond helix structure transmembrane by xdeupi on 2008-05-13 16:04:28 as
	Uniformity, ideality, and hydrogen bonds in transmembrane alpha-helices. [My Copy] Biophysical journal, Vol. 83, No. 4. (October 2002), pp. 2084-2095. by S. Kim, T. A. Cross posted to flexibility hbond helix structure transmembrane by xdeupi on 2008-05-13 16:00:40 as
	Computational analysis of membrane proteins: genomic occurrence, structure prediction and helix interactions. [My Copy] Q Rev Biophys, Vol. 37, No. 2. (May 2004), pp. 121-146. by U. Lehnert, Y. Xia, T. E. Royce, et al.C. S. Goh, Y. Liu, A. Senes, H. Yu, Z. L. Zhang, D. M. Engelman, M. Gerstein posted to membrane_proteins review structure theory transmembrane by xdeupi on 2008-05-01 19:11:17 as along with 1 person thaliana
	Stable interactions between the transmembrane domains of the adenosine A<SUB><FONT SIZE='-1'>2A</FONT></SUB> receptor [My Copy] Protein Science, Vol. 17, No. 7. (23 April 2008), pp. 1188-1199. by Damien Thévenin, Tzvetana Lazarova posted to folding gpcr structure transmembrane by xdeupi on 2008-04-28 11:00:29 as along with 1 person IrinaMoreira
	Formation of Transmembrane Helices In Vivo--Is Hydrophobicity All that Matters? [My Copy] J. Gen. Physiol., Vol. 129, No. 5. (30 April 2007), pp. 353-356. by Gunnar von Heijne posted to helix membrane_proteins review structure transmembrane by xdeupi on 2007-06-29 21:20:58 as along with 2 people and 1 group hc5428 thaliana LabCompMed
	Comparison of stability predictions and simulated unfolding of rhodopsin structures. [My Copy] Photochem Photobiol, Vol. 83, No. 2. (r 2007), pp. 351-363. by O. Tastan, E. Yu, M. Ganapathiraju, A. Aref, A. J. Rader, J. Klein-Seetharaman posted to folding helix membrane_proteins mutation rhodopsin structure transmembrane by xdeupi on 2007-06-25 10:08:49 as along with 1 group LabCompMed
	Folding Amphipathic Helices Into Membranes: Amphiphilicity Trumps Hydrophobicity. [My Copy] J Mol Biol (22 May 2007) by Mónica Fernández-Vidal, Sajith Jayasinghe, Alexey S S. Ladokhin, Stephen H H. White posted to folding helix membrane_proteins transmembrane by xdeupi on 2007-06-02 19:22:34 as along with 1 group LabCompMed
	Formation of Transmembrane Helices In Vivo--Is Hydrophobicity All that Matters? [My Copy] J Cell Biol, Vol. 177, No. 4. (21 May 2007) by G. von Heijne posted to helix membrane_proteins transmembrane by xdeupi on 2007-05-28 08:52:53 as along with 1 group LabCompMed
	Helix packing moments reveal diversity and conservation in membrane protein structure. [My Copy] J Mol Biol, Vol. 337, No. 3. (26 March 2004), pp. 713-729. by W. Liu, M. Eilers, A. B. Patel, S. O. Smith posted to gpcr helix membrane_proteins rhodopsin sequence ser structure transmembrane by xdeupi on 2007-04-26 13:49:38 as along with 1 group LabCompMed
	Setting up and running molecular dynamics simulations of membrane proteins. [My Copy] Methods (San Diego, Calif.), Vol. 41, No. 4. (April 2007), pp. 475-488. by Christian Kandt, Walter L. Ash, D. Peter Tieleman posted to dynamics md membrane modeling review transmembrane by xdeupi on 2007-03-26 10:15:17 as along with 3 people and 2 groups arnaucordomi choonpeng sobolevnrm LabCompMed baker-group
	Discontinuous membrane helices in transport proteins and their correlation with function. [My Copy] J Struct Biol (1 February 2007) by Emanuela Screpanti, Carola Hunte posted to channel membrane_proteins structure transmembrane by xdeupi on 2007-03-21 11:35:11 as along with 2 people and 1 group paulschlesinger Guff32 LabCompMed
	From Interactions of Single Transmembrane Helices to Folding of alpha-Helical Membrane Proteins: Analyzing Transmembrane Helix-Helix Interactions in Bacteria. [My Copy] Curr Protein Pept Sci, Vol. 8, No. 1. (February 20067), pp. 45-61. by Dirk Schneider, Carmen Finger, Alexander Prodöhl, Thomas Volkmer posted to helix membrane_proteins review sequence structure transmembrane by xdeupi on 2007-02-26 09:06:23 as along with 1 group LabCompMed
	Progress in structure prediction of α-helical membrane proteins [My Copy] Current Opinion in Structural Biology, Vol. 16, No. 4. (3 August 2006), pp. 496-504. by S. Fleishman, N. Bental posted to helix membrane_proteins review structure transmembrane by xdeupi on 2007-02-13 15:11:51 as along with 2 people and 1 group viktor21614 wouterboomsma LabCompMed
	How protein transmembrane segments sense the lipid environment. [My Copy] Biochemistry, Vol. 46, No. 6. (13 February 2007), pp. 1457-1465. by T. K. Nyholm, S. Ozdirekcan, J. A. Killian posted to helix lipids membrane_proteins transmembrane by xdeupi on 2007-02-13 14:59:06 as along with 2 people and 1 group andreasauerwein sebk LabCompMed
	Membrane-protein topology [My Copy] Nature Reviews Molecular Cell Biology, Vol. 7, No. 12., pp. 909-918. by Gunnar von Heijne posted to genome lmc_101 membrane_proteins review structure transmembrane by xdeupi on 2006-12-11 10:31:16 as along with 3 people and 3 groups dchughes nm merj G4ID LabCompMed Genetics-of-Gambling
	Dynamic helix interactions in transmembrane signaling. [My Copy] Cell, Vol. 127, No. 3. (3 November 2006), pp. 447-450. by E. E. Matthews, M. Zoonens, D. M. Engelman posted to activation dynamics helix review transmembrane by xdeupi on 2006-11-14 16:44:32 as along with 2 people and 1 group gcaltabiano ndoelker LabCompMed
	dummy [My Copy] by Dummy posted to 5ht1a activation agonist amber amine arrestin b2ar bimane binding cam ccr5 channel chemokine chimera crystallography cterm cxcr1 d250 dimer disease drug dry dynamics ecl2 evolution expression fluorescence folding fret genome gly gpcr gproteins hbond helix helix8 histamine hormone icl3 imaging internalization ionic leukotriene lhr ligands lipids lock loops md membrane modeling mutation n745 n749 nmr npxxy nterm opioid pharmacology polymorphism pro-kink protonation review rhodopsin s542 sequence ser spin_labeling structure switch thr thyrotropin tm2 tm3 tm5 tm6 tm7 toggle transmembrane trp txp w648 by xdeupi on 2006-10-30 12:30:16 as along with 2 people and 1 group jessicaopacic ivanrt LabCompMed
	An amino acid "transmembrane tendency" scale that approaches the theoretical limit to accuracy for prediction of transmembrane helices: relationship to biological hydrophobicity. [My Copy] Protein Sci, Vol. 15, No. 8. (August 2006), pp. 1987-2001. by G. Zhao, E. London posted to helix sequence transmembrane by xdeupi on 2006-10-27 09:46:58 as along with 1 group LabCompMed
	Helix-packing motifs in membrane proteins. [My Copy] Proc Natl Acad Sci U S A (5 September 2006) by R F S F. Walters, W F F. Degrado posted to folding helix membrane modeling sequence structure transmembrane by xdeupi on 2006-09-13 10:25:08 as along with 5 people and 1 group hc5428 thaliana dgront sebk chgjb LabCompMed
	Mutational and bioinformatics analysis of proline- and glycine-rich motifs in vesicular acetylcholine transporter [My Copy] Journal of Neurochemistry, Vol. 98, No. 5. (September 2006), pp. 1551-1559. by Chandrasekaran, Ananda, Ojeda, et al.M. Ana, Kolmakova, G. Natalia, Parsons, M. Stanley posted to activation channel gly helix mutation pro-kink structure transmembrane by xdeupi on 2006-09-05 11:43:55 as along with 1 group LabCompMed
	Asymmetric stability among the transmembrane helices of lactose permease. [My Copy] Biochemistry, Vol. 45, No. 26. (4 July 2006), pp. 8088-8095. by M. Bennett, R. D'Rozario, M. S. Sansom, P. L. Yeagle posted to activation dynamics helix md modeling structure transmembrane by xdeupi on 2006-09-05 11:09:02 as along with 1 group LabCompMed
	ZPRED: Predicting the distance to the membrane center for residues in alpha-helical membrane proteins. [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006) by E. Granseth, H. Viklund, A. Elofsson posted to helix loops membrane modeling structure transmembrane by xdeupi on 2006-09-05 10:16:39 as along with 2 people and 1 group thaliana chrn LabCompMed
	Lipid Solvation Effects Contribute to the Affinity of Gly-xxx-Gly Motif-Mediated Helix-Helix Interactions. [My Copy] Biochemistry, Vol. 45, No. 28. (18 July 2006), pp. 8507-8515. by R. M. Johnson, A. Rath, R. A. Melnyk, C. M. Deber posted to dimer gly helix lipids transmembrane by xdeupi on 2006-07-24 11:49:04 as along with 1 person and 1 group viktor21614 LabCompMed
	How strongly do sequence conservation patterns and empirical scales correlate with exposure patterns of transmembrane helices of membrane proteins? [My Copy] Biopolymers (12 July 2006) by Yungki Park, Volkhard Helms posted to helix sequence transmembrane by xdeupi on 2006-07-24 11:46:23 as along with 1 person and 1 group thaliana LabCompMed
	Molecular Dynamics Simulations of GlpF in a Micelle vs in a Bilayer: Conformational Dynamics of a Membrane Protein as a Function of Environment. [My Copy] J Phys Chem B Condens Matter Mater Surf Interfaces Biophys, Vol. 109, No. 1. (13 January 2005), pp. 575-582. by G. Patargias, P. J. Bond, S. S. Deol, M. S. Sansom posted to crystallography dynamics membrane structure transmembrane by xdeupi on 2006-07-24 10:25:16 as along with 1 person and 1 group paulschlesinger LabCompMed
	A two-entropies analysis to identify functional positions in the transmembrane region of class A G protein-coupled receptors [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 4. (1 June 2006), pp. 1018-1030. by Kai Ye, Eric-Wubbo M. Lameijer, Margot W. Beukers, Adriaan P. Ijzerman posted to activation gpcr sequence transmembrane by xdeupi on 2006-07-24 10:21:33 as along with 2 people and 1 group cen4ik cat_worth LabCompMed
	TRAJELIX: A Computational Tool for the Geometric Characterization of Protein Helices During Molecular Dynamics Simulations [My Copy] Journal of Computer-Aided Molecular Design, Vol. 20, No. 2. (February 2006), pp. 97-107. by Mezei, Mihaly, Filizola, Marta posted to md modeling structure transmembrane by xdeupi on 2006-07-21 12:20:38 as along with 1 group LabCompMed
	Metal Ion Site Engineering Indicates a Global Toggle Switch Model for Seven-transmembrane Receptor Activation. [My Copy] J Biol Chem, Vol. 281, No. 25. (23 June 2006), pp. 17337-17346. by C. E. Elling, T. M. Frimurer, L. O. Gerlach, R. Jorgensen, B. Holst, T. W. Schwartz posted to activation b2ar modeling pro-kink structure switch toggle transmembrane by xdeupi on 2006-07-04 12:17:13 as along with 1 person and 1 group IrinaMoreira LabCompMed
	Folding of helical membrane proteins: the role of polar, GxxxG-like and proline motifs. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 4. (August 2004), pp. 465-479. by A. Senes, D. E. Engel, W. F. DeGrado posted to folding gly membrane pro-kink sequence ser structure transmembrane by xdeupi on 2006-05-22 10:55:10 as along with 1 person and 1 group thaliana LabCompMed
	The Calpha ---H...O hydrogen bond: a determinant of stability and specificity in transmembrane helix interactions. [My Copy] Proc Natl Acad Sci U S A, Vol. 98, No. 16. (31 July 2001), pp. 9056-9061. by A. Senes, I. Ubarretxena-Belandia, D. M. Engelman posted to folding gly hbond membrane transmembrane by xdeupi on 2006-05-22 10:17:00 as along with 3 people and 1 group Copper_Calcio hc5428 thaliana LabCompMed
	Statistical analysis of amino acid patterns in transmembrane helices: the GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions. [My Copy] J Mol Biol, Vol. 296, No. 3. (25 February 2000), pp. 921-936. by A. Senes, M. Gerstein, D. M. Engelman posted to dimer folding gly helix membrane transmembrane by xdeupi on 2006-05-22 10:15:33 as along with 1 person and 1 group nedwards LabCompMed
	The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 4. (27 January 2004), pp. 959-963. by S. Yohannan, S. Faham, D. Yang, J. P. Whitelegge, J. U. Bowie posted to evolution helix lmc_101 mutation pro-kink sequence structure transmembrane by xdeupi on 2006-05-15 15:16:00 as along with 1 person and 1 group thaliana LabCompMed
	The role of extra-membranous inter-helical loops in helix-helix interactions. [My Copy] Protein Eng Des Sel, Vol. 18, No. 12. (December 2005), pp. 563-570. by M. B. Ulmschneider, D. P. Tieleman, M. S. Sansom posted to dynamics helix loops md membrane transmembrane by xdeupi on 2006-03-06 09:46:32 as along with 2 people and 1 group thaliana allanlo LabCompMed
	A chemogenomic analysis of the transmembrane binding cavity of human G-protein-coupled receptors. [My Copy] Proteins, Vol. 62, No. 2. (1 February 2006), pp. 509-538. by J. S. Surgand, J. Rodrigo, E. Kellenberger, D. Rognan posted to binding gpcr ligands transmembrane by xdeupi on 2006-03-01 16:33:01 as along with 1 person and 1 group naweill LabCompMed
	Conformational dynamics of M2 helices in KirBac channels: helix flexibility in relation to gating via molecular dynamics simulations. [My Copy] Biochemistry, Vol. 44, No. 44. (8 November 2005), pp. 14586-14594. by A. Grottesi, C. Domene, B. Hall, M. S. Sansom posted to activation channel dynamics md membrane modeling transmembrane by xdeupi on 2006-02-20 09:24:41 as along with 1 person and 1 group dimka LabCompMed
	Molecular dynamics simulations of large integral membrane proteins with an implicit membrane model. [My Copy] J Phys Chem B Condens Matter Mater Surf Interfaces Biophys, Vol. 110, No. 1. (12 January 2006), pp. 548-556. by S. Tanizaki, M. Feig posted to dynamics membrane modeling transmembrane by xdeupi on 2006-02-20 09:15:18 as along with 2 people and 1 group onufriev dimka LabCompMed
	Evaluating Tilt Angles of Membrane-Associated Helices: Comparison of Computational and NMR Techniques [My Copy] Biophys. J., Vol. 90, No. 5. (1 March 2006), pp. 1650-1660. by Martin B. Ulmschneider, Mark S. Sansom, Alfredo Di Nola posted to helix membrane modeling structure transmembrane by xdeupi on 2006-02-10 09:49:58 as along with 2 people and 1 group thaliana loison LabCompMed
	Missense mutations in transmembrane domains of proteins: phenotypic propensity of polar residues for human disease. [My Copy] Proteins, Vol. 54, No. 4. (1 March 2004), pp. 648-656. by A. W. Partridge, A. G. Therien, C. M. Deber posted to disease mutation ser transmembrane by xdeupi on 2006-01-27 14:31:44 as along with 1 group LabCompMed
	Self-association of Transmembrane alpha-Helices in Model Membranes: IMPORTANCE OF HELIX ORIENTATION AND ROLE OF HYDROPHOBIC MISMATCH. [My Copy] J Biol Chem, Vol. 280, No. 47. (25 November 2005), pp. 39324-39331. by Emma Sparr, Walter L L. Ash, Petr V V. Nazarov, et al.Dirk T S T. Rijkers, Marcus A A. Hemminga, D Peter P. Tieleman, J Antoinette A. Killian posted to helix transmembrane by xdeupi on 2005-11-22 19:50:55 as along with 1 person and 1 group choonpeng LabCompMed
	Tryptophan Supports Interaction of Transmembrane Helices. [My Copy] J Mol Biol (21 October 2005) by Anja Ridder, Paulina Skupjen, Stephanie Unterreitmeier, Dieter Langosch posted to helix transmembrane trp by xdeupi on 2005-11-11 22:08:07 as along with 1 person and 1 group thaliana LabCompMed
	The binding site of aminergic G protein-coupled receptors: the transmembrane segments and second extracellular loop. [My Copy] Annu Rev Pharmacol Toxicol, Vol. 42 (2002), pp. 437-467. by L. Shi, J. A. Javitch posted to agonist binding ecl2 gpcr helix loops transmembrane by xdeupi on 2005-11-01 01:00:19 as along with 1 person and 1 group IrinaMoreira LabCompMed
	The TXP motif in the second transmembrane helix of CCR5. A structural determinant of chemokine-induced activation. [My Copy] J Biol Chem, Vol. 276, No. 16. (20 April 2001), pp. 13217-13225. by C. Govaerts, C. Blanpain, X. Deupi, et al.S. Ballet, J. A. Ballesteros, S. J. Wodak, G. Vassart, L. Pardo, M. Parmentier posted to ccr5 helix tm2 transmembrane txp by xdeupi on 2005-10-25 03:18:46 as along with 1 person and 1 group tkershaw LabCompMed

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activation	173
gpcr	112
structure	89
rhodopsin	79
review	65
modeling	62
b2ar	58
dynamics	56
helix	50
transmembrane	47
agonist	46
binding	45
theory	44
ligands	41
drug	36
md	35
switch	34
membrane_proteins	31
pharmacology	31
crystallography	30
nmr	30
membrane	26
gproteins	24
dimer	20
fluorescence	18
sequence	17
ser	17
active-state	15
pro-kink	15
folding	14
fret	14
genome	14
loops	14
flexibility	13
disease	12
tm6	12
cterm	11
mutation	11
retinal	11
amber	10
energy_landscape	10
evolution	10
toggle	10
arrestin	9
docking	9
kinetics	9
lipids	9
neurokinin	9
tm5	9
chemokine	8
gpcrs	8
hbond	8
helix8	8
imaging	8
bimane	7
cancer	7
channel	7
ecl2	7
gly	7
icl3	7
ionic	7
lmc_101	7
plasticity	7
protonation	7
tm3	7
w648	7
cation-pi	6
ccr5	6
conformational_changes	6
cys_scanning	6
d250	6
internalization	6
npxxy	6
opioid	6
thyrotropin	6
tm2	6
xray	6
amine	5
binding_kinetics	5
dimerization	5
dry	5
expression	5
lock	5
polymorphism	5
spectroscopy	5
thr	5
trp	5
angiotensin	4
antagonist	4
biased_agonism	4
cam	4
cholesterol	4
disorder	4
hormone	4
n749	4
nterm	4
pathway	4
tm7	4
water	4
cxcr1	3
grk	3
histamine	3
n745	3
oligomerization	3
spin_labeling	3
toac	3
webserver	3
5ht1a	2
chimera	2
crosslinking	2
em	2
leukotriene	2
lhr	2
networks	2
pathways	2
phylogeny	2
s542	2
solvation	2
tm1	2
tmhs	2
txp	2
b1ar	1
binding_site	1
class_c	1
efficacy	1
gaba	1
induced_fit	1
inverse_agonist	1
kinase	1
kinks	1
metai	1
oligomers	1
peptide	1
priviledged_structures	1
protein_docking	1
selectivity	1
sequence_alignment	1
tm4	1
transducin	1
vasopressin	1

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