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xingxu's Zhang [13 articles]

Recent papers posted to xingxu's library by the author Zhang. You can also see everyone's Zhang.
  • A supervised hidden Markov model framework for efficiently segmenting tiling array data in transcriptional and ChIP-chip experiments: systematically incorporating validated biological knowledge.
    Bioinformatics (12 October 2006)
    by Jiang Du, Joel S S Rozowsky, Jan O O Korbel, Zhengdong D D Zhang, Thomas E E Royce, Martin H H Schultz, Michael Snyder, Mark Gerstein
    posted to transcriptome tiling methods bioinformatics by xingxu on 2008-05-06 20:13:09 as ** along with 7 people and 2 groups miguel tuck eckart_bindewald djkt SeungjoonOh blobbybirdman inesdesantiago Bioinformatics UH - Computational Biology
  • Cysteine-scanning Mutagenesis of Serotonin Transporter Intracellular Loop 2 Suggests an alpha-Helical Conformation
    J. Biol. Chem., Vol. 280, No. 35. (2 September 2005), pp. 30807-30813.
    by Yuan-Wei Zhang, Gary Rudnick
    posted to methods by xingxu on 2008-03-31 11:23:08 as **
  • A multidimensional analysis of genes mutated in breast and colorectal cancers
    Genome Res. (10 August 2007), gr.6431107.
    by Jimmy Lin, Christine M Gan, Xiaosong Zhang, Sian Jones, Tobias Sjoblom, Laura D Wood, Williams D Parsons, Nickolas Papadopoulos, Kenneth W Kinzler, Bert Vogelstein, Giovanni Parmigiani, Victor E Velculescu
    posted to breast colon genomics somatic by xingxu on 2008-02-28 22:01:18 as ** along with 2 people jfr cerami
  • Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome
    Science, Vol. 309, No. 5741. (09 September 2005), pp. 1728-1732.
    by Jay Shendure, Gregory J Porreca, Nikos B Reppas, Xiaoxia Lin, John P Mccutcheon, Abraham M Rosenbaum, Michael D Wang, Kun Zhang, Robi D Mitra, George M Church
    posted to genomics sequencing by xingxu on 2008-01-11 19:08:07 as ** along with 5 people and 2 groups arve balajis dchughes AaronDarling nhp G4ID Genetics-of-Gambling
  • A forest-based approach to identifying gene and gene gene interactions
    Proceedings of the National Academy of Sciences (28 November 2007), 0709868104.
    by Xiang Chen, Ching-Ti Liu, Meizhuo Zhang, Heping Zhang
    posted to bioinformatics epistasis by xingxu on 2008-01-11 18:44:58 as ** along with 5 people jyuh balicea cjeans zwang hpaces
  • The Genomic Landscapes of Human Breast and Colorectal Cancers.
    Science (11 October 2007)
    by Laura D D Wood, D Williams W Parsons, Siân Jones, Jimmy Lin, Tobias Sjöblom, Rebecca J J Leary, Dong Shen, Simina M M Boca, Thomas Barber, Janine Ptak, Natalie Silliman, Steve Szabo, Zoltan Dezso, Vadim Ustyanksky, Tatiana Nikolskaya, Yuri Nikolsky, Rachel Karchin, Paul A A Wilson, Joshua S S Kaminker, Zemin Zhang, Randal Croshaw, Joseph Willis, Dawn Dawson, Michail Shipitsin, James K V K Willson, Saraswati Sukumar, Kornelia Polyak, Ben Ho H Park, Charit L L Pethiyagoda, P V Krishna V Pant, Dennis G G Ballinger, Andrew B B Sparks, James Hartigan, Douglas R R Smith, Erick Suh, Nickolas Papadopoulos, Phillip Buckhaults, Sanford D D Markowitz, Giovanni Parmigiani, Kenneth W W Kinzler, Victor E E Velculescu, Bert Vogelstein
    posted to breast cancer colon genomics by xingxu on 2007-11-29 03:42:15 as ** along with 11 people and 1 group jyuh tmmurali jfr rdiaz eisei ramensky massivemayhem bioyang cabbagezs shikin renatomilani VUMCGenomics
  • Large-scale analysis of pseudogenes in the human genome
    Current Opinion in Genetics & Development, Vol. 14, No. 4. (August 2004), pp. 328-335.
    by Zhaolei Zhang, Mark Gerstein
    posted to genomics pseudogene by xingxu on 2007-08-17 17:29:57 as **
  • PseudoPipe: an automated pseudogene identification pipeline.
    Bioinformatics, Vol. 22, No. 12. (15 June 2006), pp. 1437-1439.
    by Z Zhang, N Carriero, D Zheng, J Karro, PM Harrison, M Gerstein
    posted to bioinformatics pseudogene by xingxu on 2007-08-17 17:29:35 as ** along with 3 people operon alexl Jporci
  • Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by JE Karro, Y Yan, D Zheng, Z Zhang, N Carriero, P Cayting, P Harrrison, M Gerstein
    posted to platform pseudogene by xingxu on 2007-08-17 17:29:05 as ** along with 1 person alexl
  • Reciprocal transcriptional regulation of Pou5f1 and Sox2 via the Oct4/Sox2 complex in embryonic stem cells.
    Mol Cell Biol, Vol. 25, No. 14. (July 2005), pp. 6031-6046.
    by JL Chew, YH Loh, W Zhang, X Chen, WL Tam, LS Yeap, P Li, YS Ang, B Lim, P Robson, HH Ng
    posted to pou5f1 stemcells by xingxu on 2007-08-17 17:11:25 as **
  • Oct4 pseudogenes are transcribed in cancers
    Biochemical and Biophysical Research Communications, Vol. 337, No. 4. (2 December 2005), pp. 1047-1051.
    by Guangli Suo, Jin Han, Xia Wang, Jingyu Zhang, Yannan Zhao, Yanhong Zhao, Jianwu Dai
    posted to pou5f1 pseudogene by xingxu on 2007-08-17 17:02:10 as ** along with 1 person tuck
  • Genetic Viability and Population History of the Giant Panda, Putting an End to the "Evolutionary Dead End"?
    Mol Biol Evol, Vol. 24, No. 8. (1 August 2007), pp. 1801-1810.
    by Baowei Zhang, Ming Li, Zejun Zhang, Benoit Goossens, Lifeng Zhu, Shanning Zhang, Jinchu Hu, Michael W Bruford, Fuwen Wei
    posted to personal-interest by xingxu on 2007-08-07 20:39:00 as **
  • Global variation in copy number in the human genome
    Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454.
    by Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, Daniel T Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen, Eun K Cho, Stephanie Dallaire, Jennifer L Freeman, Juan R Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R Macdonald, Christian R Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P Carter, Hiroyuki Aburatani, Charles Lee, Keith W Jones, Stephen W Scherer, Matthew E Hurles
    posted to cnv genomics hapmap by xingxu on 2007-08-01 21:25:01 as read along with 21 people and 6 groups bpb jfr balajis dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr azazello dbgrant colinveal Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB
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