xwbcn's library 126 articles Export

	Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity [My Copy] Nucl. Acids Res., Vol. 37, No. 15. (1 August 2009), e104. by Nicolas Philippe, Anthony Boureux, Laurent Brehelin, Jorma Tarhio, Therese Commes, Eric Rivals posted to i_totally_dont_understand next_generation_sequencing solexa by xwbcn on 2009-07-03 10:45:23 as along with 5 people fstrozzi sotacam inesdesantiago jmcq guhjy
	Starch as a major integrator in the regulation of plant growth. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (8 June 2009) by Ronan Sulpice, Eva-Theresa T. Pyl, Hirofumi Ishihara, et al.Sandra Trenkamp, Matthias Steinfath, Hanna Witucka-Wall, Yves Gibon, Björn Usadel, Fabien Poree, Maria Conceição C. Piques, Maria Von Korff, Marie Caroline C. Steinhauser, Joost J. Keurentjes, Manuela Guenther, Melanie Hoehne, Joachim Selbig, Alisdair R. Fernie, Thomas Altmann, Mark Stitt posted to arabidopsis association_mapping heterosis plants regulation starch by xwbcn on 2009-06-19 17:19:56 as
	Single feature polymorphisms between two rice cultivars detected using a median polish method [My Copy] TAG Theoretical and Applied Genetics by Weibo Xie, Ying Chen, Gang Zhou, et al.Lei Wang, Chengjun Zhang, Jianwei Zhang, Jinghua Xiao, Tong Zhu, Qifa Zhang posted to genome median_polish method microarray rice sfp by xwbcn on 2009-05-30 15:50:15 as
	High-resolution DNA-binding specificity analysis of yeast transcription factors. [My Copy] Genome research, Vol. 19, No. 4. (21 April 2009), pp. 556-566. by Cong Zhu, Kelsey J. Byers, Rachel Patton P. McCord, et al.Zhenwei Shi, Michael F. Berger, Daniel E. Newburger, Katrina Saulrieta, Zachary Smith, Mita V. Shah, Mathangi Radhakrishnan, Anthony A. Philippakis, Yanhui Hu, Federico De Masi, Marcin Pacek, Andreas Rolfs, Tal Murthy, Joshua Labaer, Martha L. Bulyk posted to chip-chip chip-seq motif tf trans-regulatory yeast by xwbcn on 2009-04-08 05:42:43 as along with 9 people matted austin_mcdonald siebert dolchan rpatward absterga djkt kristallreiner aalibes
	Multiple whole-genome alignments without a reference organism [My Copy] Genome Research, Vol. 19, No. 4. (28 April 2009), pp. 682-689. by Inna Dubchak, Alexander Poliakov, Andrey Kislyuk, Michael Brudno posted to alignment annotation genome genome_alignment by xwbcn on 2009-04-08 05:41:46 as along with 12 people fstrozzi GustavoLacerda michaelbarton mlangill dakelley Neeperando zwang nyyu djkt semrich azazello mhamada
	Iterative Group Analysis (iGA): A simple tool to enhance sensitivity and facilitate interpretation of microarray experiments [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (2004) by Rainer Breitling, Anna Amtmann, Pawel Herzyk posted to method microarray rank_based by xwbcn on 2009-02-19 12:29:37 as along with 1 person ndiaz
	SNP-specific array-based allele-specific expression analysis. [My Copy] Genome research, Vol. 18, No. 5. (27 May 2008), pp. 771-779. by H. T. Bjornsson, T. J. Albert, C. M. Ladd-Acosta, et al.R. D. Green, M. A. Rongione, C. M. Middle, R. A. Irizarry, K. W. Broman, A. P. Feinberg posted to allele_specific_expression by xwbcn on 2009-01-06 14:57:24 as along with 5 people and 1 group vplagnol gruberjd guhjy rschulz dpollard RockmanLab
	Analysis of allelic differential expression in human white blood cells [My Copy] Genome Res., Vol. 16, No. 3. (1 March 2006), pp. 331-339. by Krishna P. V. Pant, Heng Tao, Erica J. Beilharz, Dennis G. Ballinger, David R. Cox, Kelly A. Frazer posted to allele_specific_expression human by xwbcn on 2009-01-06 14:55:50 as along with 5 people and 1 group RMGraze qfwills emarker mimulus_99 dpollard RockmanLab
	Annotating Genes of Known and Unknown Function by Large-Scale Coexpression Analysis [My Copy] Plant Physiol., Vol. 147, No. 1. (1 May 2008), pp. 41-57. by Kevin Horan, Charles Jang, Julia Bailey-Serres, et al.Ron Mittler, Christian Shelton, Jeff F. Harper, Jian-Kang Zhu, John C. Cushman, Martin Gollery, Thomas Girke posted to annotation arabidopsis co-expression todo by xwbcn on 2009-01-06 08:47:59 as along with 3 people sanchezbuelna kengg guhjy
	Transcriptional coordination of the metabolic network in Arabidopsis. [My Copy] Plant Physiol, Vol. 142, No. 2. (October 2006), pp. 762-774. by H. Wei, S. Persson, T. Mehta, et al.V. Srinivasasainagendra, L. Chen, G. P. Page, C. Somerville, A. Loraine posted to arabidopsis co-expression todo by xwbcn on 2009-01-06 08:44:43 as along with 1 person kengg
	CressExpress: A tool for large-scale mining of expression data from Arabidopsis thaliana. [My Copy] Plant physiology (8 May 2008) by Vinodh Srinivasasainagendra, Grier Page, Tapan Mehta, Issa Coulibaly, Ann E E. Loraine posted to arabidopsis co-expression todo by xwbcn on 2009-01-06 08:43:42 as along with 3 people imtechnology talponer kengg
	Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues. [My Copy] Bioinformatics, Vol. 18 Suppl 1 (2002) by T. Pupko, R. E. Bell, I. Mayrose, F. Glaser, N. Ben-Tal posted to evolution tools by xwbcn on 2009-01-03 09:37:15 as along with 2 people bicko sriram_s
	High-resolution mapping of copy-number alterations with massively parallel sequencing [My Copy] Nat Meth, Vol. 6, No. 1. (30 November 2008), pp. 99-103. by Derek Y. Chiang, Gad Getz, David B. Jaffe, et al.Michael J. T. O'Kelly, Xiaojun Zhao, Scott L. Carter, Carsten Russ, Chad Nusbaum, Matthew Meyerson, Eric S. Lander posted to copy_number_varient next_generation_sequencing by xwbcn on 2008-12-15 10:54:04 as along with 4 people stubrown stsaft jbhiatt absterga
	Design and analysis of ChIP-seq experiments for DNA-binding proteins. [My Copy] Nature biotechnology, Vol. 26, No. 12. (16 December 2008), pp. 1351-1359. by Peter V. Kharchenko, Michael Y. Tolstorukov, Peter J. Park posted to chip-seq motif by xwbcn on 2008-12-15 10:53:15 as along with 19 people and 2 groups hzoltan stubrown guhjy gdb tonamswish ewilban1 coela ekotelnikova jfr floatingpoint idonaldson inesdesantiago WanderingAengus vplagnol fpattyn mutagenic kengg rschulz ghattem KCL & UCL Bioinformatics SIMR bioinformatics
	Sequencing of natural strains of Arabidopsis thaliana with short reads [My Copy] Genome Research, Vol. 18, No. 12. (29 December 2008), pp. 2024-2033. by Stephan Ossowski, Korbinian Schneeberger, Richard M. Clark, Christa Lanz, Norman Warthmann, Detlef Weigel posted to arabidopsis next_generation_sequencing solexa by xwbcn on 2008-12-09 07:30:27 as along with 10 people and 2 groups n00c APRegier sameersoi dandaman jasontsai stajich natstreet druvus GustavoLacerda semrich Mycology Notre Dame Bioinformatics
	Compressed indexing and local alignment of DNA [My Copy] Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 791-797. by T. W. Lam, W. K. Sung, S. L. Tam, C. K. Wong, S. M. Yiu posted to alignment genome solexa by xwbcn on 2008-11-27 03:10:10 as along with 6 people gbenson n00c druvus antonkratz cap1 lp2
	Decoding randomly ordered DNA arrays. [My Copy] Genome research, Vol. 14, No. 5. (May 2004), pp. 870-877. by Kevin L. Gunderson, Semyon Kruglyak, Michael S. Graige, et al.Francisco Garcia, Bahram G. Kermani, Chanfeng Zhao, Diping Che, Todd Dickinson, Eliza Wickham, Jim Bierle, Dennis Doucet, Monika Milewski, Robert Yang, Chris Siegmund, Juergen Haas, Lixin Zhou, Arnold Oliphant, Jian-Bing B. Fan, Steven Barnard, Mark S. Chee posted to illumina microarray platform by xwbcn on 2008-10-23 04:32:08 as along with 5 people and 2 groups dswan daforerog ptrobajo rschulz jeremymiller Bioinformatics GeschwindLab
	Evolution of primate gene expression [My Copy] Nature Reviews Genetics, Vol. 7, No. 9., pp. 693-702. by Philipp Khaitovich, Wolfgang Enard, Michael Lachmann, Svante Pääbo posted to comparative_study evolution expression human_genome primate transcriptome by xwbcn on 2008-09-27 04:45:40 as along with 6 people provero balicea usagi-kirin cjeans Manchester emarker
	Transposable element annotation of the rice genome. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 2. (22 January 2004), pp. 155-160. by Nikoleta Juretic, Thomas E. Bureau, Richard M. Bruskiewich posted to annotation genome rice transposable_element by xwbcn on 2008-09-23 10:59:18 as along with 3 people operon michaelbarton urgi
	A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes. [My Copy] J Comput Biol, Vol. 9, No. 2. (2002), pp. 447-464. by G. Thijs, K. Marchal, M. Lescot, et al.S. Rombauts, B. De Moor, P. Rouzé, Y. Moreau posted to co-expression expression motif by xwbcn on 2008-09-23 10:57:54 as along with 2 people wowalz natstreet
	Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5742. (16 September 2005), pp. 1850-1854. by Philipp Khaitovich, Ines Hellmann, Wolfgang Enard, et al.Katja Nowick, Marcus Leinweber, Henriette Franz, Gunter Weiss, Michael Lachmann, Svante Pääbo posted to co-expression comparative_study human mammal transcriptome by xwbcn on 2008-09-22 02:29:15 as along with 11 people and 2 groups daveGerrard mox provero balicea madhadron nickluscombe hdopazo djkt mikaelhuss JeffR100 usagi-kirin EBI-regulation BioinfoCIPF
	Cross-species comparison of gene expression between human and porcine tissue, using single microarray platform--preliminary results. [My Copy] Clinical transplantation, Vol. 18 Suppl 12 (2004), pp. 76-80. by G. Shah, M. Azizian, D. Bruch, R. Mehta, D. Kittur posted to arabidopsis microarray plants by xwbcn on 2008-08-22 10:07:26 as
	Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks. [My Copy] BMC Genomics, Vol. 7 (2006) by M. R. Carlson, B. Zhang, Z. Fang, P. S. Mischel, S. Horvath, S. F. Nelson posted to co-expression networks-reconstruction yeast by xwbcn on 2008-05-25 08:17:51 as along with 5 people and 1 group sficklin natstreet druvus jeremymiller kengg GeschwindLab
	Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis [My Copy] BMC Plant Biology, Vol. 8 (10 April 2008), 33. by Robert M. Stupar, Jack M. Gardiner, Aaron G. Oldre, William J. Haun, Vicki L. Chandler, Nathan M. Springer posted to expression_platform heterosis maize natural_variation transcriptome by xwbcn on 2008-05-20 16:33:45 as along with 1 person natstreet
	The Genomes of Oryza sativa: a history of duplications. [My Copy] PLoS biology, Vol. 3, No. 2. (February 2005) by J. Yu, J. Wang, W. Lin, et al.S. Li, H. Li, J. Zhou, P. Ni, W. Dong, S. Hu, C. Zeng, J. Zhang, Y. Zhang, R. Li, Z. Xu, S. Li, X. Li, H. Zheng, L. Cong, L. Lin, J. Yin, J. Geng, G. Li, J. Shi, J. Liu, H. Lv, J. Li, J. Wang, Y. Deng, L. Ran, X. Shi, X. Wang, Q. Wu, C. Li, X. Ren, J. Wang, X. Wang, D. Li, D. Liu, X. Zhang, Z. Ji, W. Zhao, Y. Sun, Z. Zhang, J. Bao, Y. Han, L. Dong, J. Ji, P. Chen, S. Wu, J. Liu, Y. Xiao, D. Bu, J. Tan, L. Yang, C. Ye, J. Zhang, J. Xu, Y. Zhou, Y. Yu, B. Zhang, S. Zhuang, H. Wei, B. Liu, M. Lei, H. Yu, Y. Li, H. Xu, S. Wei, X. He, L. Fang, Z. Zhang, Y. Zhang, X. Huang, Z. Su, W. Tong, J. Li, Z. Tong, S. Li, J. Ye, L. Wang, L. Fang, T. Lei, C. Chen, H. Chen, Z. Xu, H. Li, H. Huang, F. Zhang, H. Xu, N. Li, C. Zhao, S. Li, L. Dong, Y. Huang, L. Li, Y. Xi, Q. Qi, W. Li, B. Zhang, W. Hu, Y. Zhang, X. Tian, Y. Jiao, X. Liang, J. Jin, L. Gao, W. Zheng, B. Hao, S. Liu, W. Wang, L. Yuan, M. Cao, J. McDermott, R. Samudrala, J. Wang, G. K. Wong, H. Yang posted to evolution genome_alignment plant rice by xwbcn on 2008-05-20 16:06:38 as along with 1 person scryrps
	Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics [My Copy] Science, Vol. 320, No. 5878. (16 May 2008), pp. 938-941. by Katja Baerenfaller, Jonas Grossmann, Monica A. Grobei, et al.Roger Hull, Matthias Hirsch-Hoffmann, Shaul Yalovsky, Philip Zimmermann, Ueli Grossniklaus, Wilhelm Gruissem, Sacha Baginsky posted to arabidopsis proteome system_biology by xwbcn on 2008-04-27 17:35:19 as along with 8 people dandaman jmartin49 druvus timflutre renatomilani megraw caseybrown jmjimenez
	Arabidopsis CBF1 and CBF3 have a different function than CBF2 in cold acclimation and define different gene classes in the CBF regulon. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 52. (26 December 2007), pp. 21002-21007. by F. Novillo, J. Medina, J. Salinas posted to cold expression gene_family regulation by xwbcn on 2008-01-17 03:59:38 as
	A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis [My Copy] BMC Genomics, Vol. 8 (12 November 2007), 414. by Junfeng Chen, Vikas Agrawal, Magnus Rattray, et al.Marilyn A. L. West, Dina, Richard W. Michelmore, Sean J. Coughlan, Blake C. Meyers posted to expression_platform by xwbcn on 2007-12-21 10:39:20 as
	Deep analysis of cellular transcriptomes - LongSAGE versus classic MPSS [My Copy] BMC Genomics, Vol. 8 (24 September 2007), 333. by Lawrence Hene, Vattipally B. Sreenu, Mai T. Vuong, et al. Hussain, Julian K. Sutton, Sarah L. Rowland-Jones, Simon J. Davis, Edward J. Evans posted to expression_platform by xwbcn on 2007-12-21 10:36:56 as along with 1 person guhjy
	Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips. [My Copy] BMC Genomics, Vol. 6 (2005) by F. van Ruissen, J. M. Ruijter, G. J. Schaaf, et al.L. Asgharnegad, D. A. Zwijnenburg, M. Kool, F. Baas posted to expression_platform by xwbcn on 2007-12-21 10:36:11 as
	A genome-wide gain-of-function analysis of rice genes using the FOX-hunting system. [My Copy] Plant Mol Biol (10 October 2007) by Hidemitsu Nakamura, Makoto Hakata, Kou Amano, et al.Akio Miyao, Naoko Toki, Mariko Kajikawa, Jinhuan Pang, Naokuni Higashi, Shigeko Ando, Seiichi Toki, Miki Fujita, Akiko Enju, Motoaki Seki, Miki Nakazawa, Takanari Ichikawa, Kazuo Shinozaki, Minami Matsui, Yoshiaki Nagamura, Hirohiko Hirochika, Hiroaki Ichikawa posted to full-length_cdna rice by xwbcn on 2007-10-23 07:18:11 as
	Natural Variation among Arabidopsis thaliana Accessions for Transcriptome Response to Exogenous Salicylic Acid. [My Copy] Plant Cell (13 July 2007) by Hans van Leeuwen, Daniel J J. Kliebenstein, Marilyn A L A. West, et al.Kyunga Kim, Remco van Poecke, Fumiaki Katagiri, Richard W W. Michelmore, Rebecca W W. Doerge, Dina A A. St Clair posted to arabidopsis natural_variation salicylic_acid transcriptome by xwbcn on 2007-09-30 02:53:21 as along with 1 person natstreet
	Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. [My Copy] Trends Plant Sci, Vol. 12, No. 7. (July 2007), pp. 301-309. by R. Sunkar, V. Chinnusamy, J. Zhu, J. K. Zhu posted to abiotic mirna nutrient plants stress by xwbcn on 2007-09-07 01:43:43 as along with 1 person natstreet
	Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana [My Copy] Science, Vol. 317, No. 5836. (20 July 2007), pp. 338-342. by Richard M. Clark, Gabriele Schweikert, Christopher Toomajian, et al.Stephan Ossowski, Georg Zeller, Paul Shinn, Norman Warthmann, Tina T. Hu, Glenn Fu, David A. Hinds, Huaming Chen, Kelly A. Frazer, Daniel H. Huson, Bernhard Scholkopf, Magnus Nordborg, Gunnar Ratsch, Joseph R. Ecker, Detlef Weigel posted to arabidopsis native_variation polymorphism by xwbcn on 2007-07-26 08:15:38 as along with 7 people and 1 group winterschlaefer natstreet maren GeeSharpMinor sstoma braingrind dandaman VirtualPlants
	Prediction of plant microRNA targets. [My Copy] Cell, Vol. 110, No. 4. (23 August 2002), pp. 513-520. by M. W. Rhoades, B. J. Reinhart, L. P. Lim, C. B. Burge, B. Bartel, D. P. Bartel posted to arabidopsis comparative_study data_mining method mirna plants by xwbcn on 2007-07-01 17:13:13 as along with 2 people and 1 group alessandroparini cdawson GIG
	Consensus by democracy. Using meta-analyses of microarray and genomic data to model the cold acclimation signaling pathway in Arabidopsis. [My Copy] Plant Physiol, Vol. 141, No. 4. (August 2006), pp. 1219-1232. by C. Benedict, M. Geisler, J. Trygg, N. Huner, V. Hurry posted to arabidopsis chip cold comparative_study data_mining expression genome microarray motif networks transcriptome by xwbcn on 2007-06-11 15:16:05 as along with 1 person natstreet
	Promoter features related to tissue specificity as measured by Shannon entropy [My Copy] Genome Biology, Vol. 6, No. 4. (2005), R33. by Jonathan Schug, Winfried P. Schuller, Claudia Kappen, J. Michael Salbaum, Maja Bucan, Christian Stoeckert posted to expression human promoter shannon_entropy by xwbcn on 2007-06-07 04:04:55 as along with 3 people absterga hagechouchin443 jschug
	Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors [My Copy] Nature Genetics, Vol. 35, No. 1. (03 August 2003), pp. 57-64. by Gael Yvert, Rachel B. Brem, Jacqueline Whittle, et al.Joshua M. Akey, Eric Foss, Erin N. Smith, Rachel Mackelprang, Leonid Kruglyak posted to tf trans-regulatory yeast by xwbcn on 2007-05-23 09:59:14 as along with 4 people and 1 group ajbattle RMGraze oannes lp2 Regulomics_UCHSC
	An integrated view of gene expression and solute profiles of Arabidopsis tumors: a genome-wide approach. [My Copy] Plant Cell, Vol. 18, No. 12. (December 2006), pp. 3617-3634. by R. Deeken, J. C. Engelmann, M. Efetova, et al.T. Czirjak, T. Müller, W. M. Kaiser, O. Tietz, M. Krischke, M. J. Mueller, K. Palme, T. Dandekar, R. Hedrich posted to arabidopsis expression tumor by xwbcn on 2007-05-17 04:04:44 as
	Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 17. (24 April 2007), pp. 7145-7150. by X. Xie, T. S. Mikkelsen, A. Gnirke, K. Lindblad-Toh, M. Kellis, E. S. Lander posted to genome_alignment human human_genome mammal motif networks tf by xwbcn on 2007-05-11 09:54:09 as along with 6 people and 1 group gderwin cisevol aprasad olympos rschulz bpcusack JLab
	Identification of plant promoter constituents by analysis of local distribution of short sequences [My Copy] BMC Genomics, Vol. 8, No. 1. (08 March 2007), 67. by Yoshiharu Yamamoto, Hiroyuki Ichida, Minami Matsui, et al.Junichi Obokata, Tetsuya Sakurai, Masakazu Satou, Motoaki Seki, Kazuo Shinozaki, Tomoko Abe posted to arabidopsis comparative_study g genome motif promoter rice by xwbcn on 2007-05-02 08:08:59 as along with 6 people and 1 group dandaman kengg saru byy Jporci natstreet Plantandetc
	Hd3a Protein Is a Mobile Flowering Signal in Rice [My Copy] Science, Vol. 316, No. 5827. (18 May 2007), pp. 1033-1036. by Shojiro Tamaki, Shoichi Matsuo, Hann L. Wong, Shuji Yokoi, Ko Shimamoto posted to arabidopsis flowering promoter rice by xwbcn on 2007-04-22 08:33:26 as along with 1 person barneb
	Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis [My Copy] Genome Biology, Vol. 8 (11 January 2007), R7. by Rodrigo A. Gutierrez, Laurence Lejay, Alexis Dean, Francesca Chiaromonte, Dennis E. Shasha, Gloria M. Coruzzi posted to arabidopsis chip comparative_study expression gene_ontology genome microarray networks transcriptome by xwbcn on 2007-03-24 08:24:08 as along with 3 people and 1 group kengg joseph_x_zhou natstreet bioNetwork_sysBio
	Single feature polymorphism discovery in rice. [My Copy] PLoS ONE, Vol. 2 (2007) by R. Kumar, J. Qiu, T. Joshi, B. Valliyodan, D. Xu, H. T. Nguyen posted to chip genome plant plants rice sfp by xwbcn on 2007-03-22 06:48:35 as along with 1 person natstreet
	From the Cover: Overdominant quantitative trait loci for yield and fitness in tomato [My Copy] PNAS, Vol. 103, No. 35. (29 August 2006), pp. 12981-12986. by Yaniv Semel, Jonathan Nissenbaum, Naama Menda, et al.Michael Zinder, Uri Krieger, Noa Issman, Tzili Pleban, Zachary Lippman, Amit Gur, Dani Zamir posted to expression genome heterosis by xwbcn on 2007-02-28 11:02:59 as
	Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. [My Copy] Genome Biol, Vol. 6, No. 2. (2005) by S. E. Choe, M. Boutros, A. M. Michelson, G. M. Church, M. S. Halfon posted to chip comparative_study method microarray by xwbcn on 2007-02-26 15:21:39 as along with 8 people and 1 group bertelsen lwaldron heliopais jeremymiller ccr ghattem waszak daforerog GeschwindLab
	Tissue-driven hypothesis of genomic evolution and sequence-expression correlations [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 8. (20 February 2007), pp. 2779-2784. by Xun Gu, Zhixi Su posted to evolution expression gene_family genome microarray by xwbcn on 2007-02-25 15:03:41 as along with 7 people aktas jeremymiller gpalidwor shigepong cjeans ghattem balicea
	Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data [My Copy] BMC Bioinformatics, Vol. 7 (04 July 2006), 330. by Seon-Young Kim, Yongsung Kim posted to tf promoter microarray mammal human_genome genome expression chip by xwbcn on 2007-01-13 04:28:37 as along with 3 people heliopais jfr Ao_Li2007
	Large-Scale cis-Element Detection by Analysis of Correlated Expression and Sequence Conservation between Arabidopsis and Brassica oleracea [My Copy] Plant Physiol., Vol. 142, No. 4. (1 December 2006), pp. 1589-1602. by Georg Haberer, Michael T. Mader, Peter Kosarev, Manuel Spannagl, Li Yang, Klaus F. X. Mayer posted to arabidopsis chip comparative_study genome microarray motif promoter by xwbcn on 2006-10-13 02:53:11 as along with 5 people and 1 group operon dpollard kengg nklee xili03 EisenLab
	Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster. [My Copy] Proc Natl Acad Sci U S A (31 July 2006) by Celine Moorman, Ling V V. Sun, Junbai Wang, et al.Elzo de Wit, Wendy Talhout, Lucas D D. Ward, Frauke Greil, Xiang-Jun J. Lu, Kevin P P. White, Harmen J J. Bussemaker, Bas van Steensel posted to interaction pathway tf transcriptome by xwbcn on 2006-10-12 13:20:52 as along with 4 people and 4 groups ana indigoviolet johncumbers wrowell structural_bioinformatics Bioinformatics EisenLab Cline_lab

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arabidopsis	33
microarray	32
genome	27
evolution	24
rice	24
chip	20
motif	19
comparative_study	16
expression	15
human_genome	10
mitochondrial-permeability-transition	9
flowering	8
tf	8
transcriptome	8
genome_alignment	7
human	7
plants	7
co-expression	6
promoter	6
gene_family	5
heterosis	5
mirna	5
sfp	5
expression_platform	4
maize	4
mammal	4
method	4
plant	4
annotation	3
antisense	3
data_mining	3
disequilibrium_linkage	3
gene_ontology	3
networks	3
next_generation_sequencing	3
retrogene	3
sense	3
solexa	3
todo	3
yeast	3
alignment	2
allele_specific_expression	2
chip-seq	2
cold	2
interaction	2
natural_variation	2
pathway	2
pollen	2
regulation	2
tools	2
trans-regulatory	2
abiotic	1
association_mapping	1
baley	1
c	1
chip-chip	1
copy_number_varient	1
database	1
elegans	1
full-length_cdna	1
g	1
illumina	1
interactions	1
intron	1
i_totally_dont_understand	1
mads-box	1
median_polish	1
native_variation	1
networks-reconstruction	1
nutrient	1
phylogenetics	1
platform	1
polymorphism	1
primate	1
proteome	1
rank_based	1
regeneration	1
repeats	1
salicylic_acid	1
selection	1
shannon_entropy	1
starch	1
stress	1
system_biology	1
te	1
transposable_element	1
tumor	1

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