xwbcn's chip [20 articles] Export

Recent papers added to xwbcn's library classified by the tag chip. You can also see everyone's chip.

	Consensus by democracy. Using meta-analyses of microarray and genomic data to model the cold acclimation signaling pathway in Arabidopsis. [My Copy] Plant Physiol, Vol. 141, No. 4. (August 2006), pp. 1219-1232. by C. Benedict, M. Geisler, J. Trygg, N. Huner, V. Hurry posted to arabidopsis chip cold comparative_study data_mining expression genome microarray motif networks transcriptome by xwbcn on 2007-06-11 15:16:05 as along with 1 person natstreet
	Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis [My Copy] Genome Biology, Vol. 8 (11 January 2007), R7. by Rodrigo A. Gutierrez, Laurence Lejay, Alexis Dean, Francesca Chiaromonte, Dennis E. Shasha, Gloria M. Coruzzi posted to arabidopsis chip comparative_study expression gene_ontology genome microarray networks transcriptome by xwbcn on 2007-03-24 08:24:08 as along with 3 people and 1 group kengg joseph_x_zhou natstreet bioNetwork_sysBio
	Single feature polymorphism discovery in rice. [My Copy] PLoS ONE, Vol. 2 (2007) by R. Kumar, J. Qiu, T. Joshi, B. Valliyodan, D. Xu, H. T. Nguyen posted to chip genome plant plants rice sfp by xwbcn on 2007-03-22 06:48:35 as along with 1 person natstreet
	Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. [My Copy] Genome Biol, Vol. 6, No. 2. (2005) by S. E. Choe, M. Boutros, A. M. Michelson, G. M. Church, M. S. Halfon posted to chip comparative_study method microarray by xwbcn on 2007-02-26 15:21:39 as along with 8 people and 1 group bertelsen lwaldron heliopais jeremymiller ccr ghattem waszak daforerog GeschwindLab
	Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data [My Copy] BMC Bioinformatics, Vol. 7 (04 July 2006), 330. by Seon-Young Kim, Yongsung Kim posted to tf promoter microarray mammal human_genome genome expression chip by xwbcn on 2007-01-13 04:28:37 as along with 3 people heliopais jfr Ao_Li2007
	Large-Scale cis-Element Detection by Analysis of Correlated Expression and Sequence Conservation between Arabidopsis and Brassica oleracea [My Copy] Plant Physiol., Vol. 142, No. 4. (1 December 2006), pp. 1589-1602. by Georg Haberer, Michael T. Mader, Peter Kosarev, Manuel Spannagl, Li Yang, Klaus F. X. Mayer posted to arabidopsis chip comparative_study genome microarray motif promoter by xwbcn on 2006-10-13 02:53:11 as along with 5 people and 1 group operon dpollard kengg nklee xili03 EisenLab
	Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550. by Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, et al.Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Scott L. Pomeroy, Todd R. Golub, Eric S. Lander, Jill P. Mesirov posted to chip data_mining human microarray pathway by xwbcn on 2006-08-16 10:28:45 as along with 45 people and 4 groups gbloeb miskar giovenko greg dolchan pattersonee mhamidi jperkins zufar ptrobajo antonkratz yaredo tmmurali VGreiff daforerog paszkows ipark-kaist bertelsen ajbattle jessopher askrajiv idonaldson ihpark chrisamiller dragonrez jfr balajis maryee hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH Bioinformatics BioinfoCIPF GeschwindLab Indigene
	Gametophytic selection in Arabidopsis thaliana supports the selective model of intron length reduction. [My Copy] PLoS Genet, Vol. 1, No. 2. (August 2005) by C. Seoighe, C. Gehring, L. D. Hurst posted to arabidopsis chip expression flowering intron microarray pollen by xwbcn on 2006-08-01 13:47:09 as along with 1 person bpcusack
	A gene expression map of Arabidopsis thaliana development [My Copy] Nature Genetics, Vol. 37, No. 5. (03 April 2005), pp. 501-506. by Markus Schmid, Timothy S. Davison, Stefan R. Henz, et al.Utz J. Pape, Monika Demar, Martin Vingron, Bernhard Schölkopf, Detlef Weigel, Jan U. Lohmann posted to arabidopsis chip comparative_study microarray by xwbcn on 2006-07-06 16:16:47 as along with 5 people and 1 group dandaman Borelli scuffster natstreet p2vani Botany and Plant Sciences
	Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation. [My Copy] Plant Physiol, Vol. 138, No. 2. (June 2005), pp. 744-756. by C. Pina, F. Pinto, J. A. Feijó, J. D. Becker posted to arabidopsis chip comparative_study microarray pollen by xwbcn on 2006-06-16 16:03:36 as
	Comparative analysis of the Arabidopsis pollen transcriptome. [My Copy] Plant Physiol, Vol. 132, No. 2. (June 2003), pp. 640-652. by D. Honys, D. Twell posted to arabidopsis chip comparative_study microarray by xwbcn on 2006-06-16 15:01:35 as
	High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis. [My Copy] Genome Res, Vol. 16, No. 6. (June 2006), pp. 787-795. by M. A. West, H. van Leeuwen, A. Kozik, et al.D. J. Kliebenstein, R. W. Doerge, D. A. St Clair, R. W. Michelmore posted to arabidopsis chip microarray sfp by xwbcn on 2006-06-14 07:54:19 as along with 2 people leandrogneves RMGraze
	Genome-wide analysis of spatial and temporal gene expression in rice panicle development [My Copy] The Plant Journal, Vol. 46, No. 3. (May 2006), pp. 503-511. by Ikuyo Furutani, Shin Sukegawa, Junko Kyozuka posted to chip expression flowering microarray rice by xwbcn on 2006-05-30 18:56:54 as
	Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome [My Copy] Science, Vol. 302, No. 5646. (31 October 2003), pp. 842-846. by Kayoko Yamada, Jun Lim, Joseph M. Dale, et al.Huaming Chen, Paul Shinn, Curtis J. Palm, Audrey M. Southwick, Hank C. Wu, Christopher Kim, Michelle Nguyen, Paul Pham, Rosa Cheuk, George Karlin-Newmann, Shirley X. Liu, Bao Lam, Hitomi Sakano, Troy Wu, Guixia Yu, Molly Miranda, Hong L. Quach, Matthew Tripp, Charlie H. Chang, Jeong M. Lee, Mitsue Toriumi, Marie M. Chan, Carolyn C. Tang, Courtney S. Onodera, Justine M. Deng, Kenji Akiyama, Yasser Ansari, Takahiro Arakawa, Jenny Banh, Fumika Banno, Leah Bowser, Shelise Brooks, Piero Carninci, Qimin Chao, Nathan Choy, Akiko Enju, Andrew D. Goldsmith, Mani Gurjal, Nancy F. Hansen, Yoshihide Hayashizaki, Chanda Johnson-Hopson, Vickie W. Hsuan, Kei Iida, Meagan Karnes, Shehnaz Khan, Eric Koesema, Junko Ishida, Paul X. Jiang, Ted Jones, Jun Kawai, Asako Kamiya, Cristina Meyers, Maiko Nakajima, Mari Narusaka, Motoaki Seki, Tetsuya Sakurai, Masakazu Satou, Racquel Tamse, Maria Vaysberg, Erika K. Wallender, Cecilia Wong, Yuki Yamamura, Shiaulou Yuan, Kazuo Shinozaki, Ronald W. Davis, Athanasios Theologis, Joseph R. Ecker posted to arabidopsis chip comparative_study microarray by xwbcn on 2006-05-18 03:00:13 as along with 4 people and 1 group ThomasDOtto lptolik sdinka kaspermunch Bioinformatics
	Establishing glucose- and ABA-regulated transcription networks in Arabidopsis by microarray analysis and promoter classification using a Relevance Vector Machine. [My Copy] Genome Res (19 January 2006) by Yunhai Li, Kee Khoon K. Lee, Sean Walsh, et al.Caroline Smith, Sophie Hadingham, Karim Sorefan, Gavin Cawley, Michael W W. Bevan posted to arabidopsis chip motif by xwbcn on 2006-04-04 14:20:09 as
	Serial Analysis of Gene Expression Study of a Hybrid Rice Strain (LYP9) and Its Parental Cultivars [My Copy] Plant Physiol., Vol. 138, No. 3. (1 July 2005), pp. 1216-1231. by Jingyue Bao, Sanggyu Lee, Chen Chen, et al.Xiuqing Zhang, Yu Zhang, Siqi Liu, Terry Clark, Jian Wang, Mengliang Cao, Huanming Yang, San M. Wang, Jun Yu posted to chip heterosis rice by xwbcn on 2006-03-26 08:14:18 as
	A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation [My Copy] PNAS, Vol. 102, No. 33. (16 August 2005), pp. 11934-11939. by Julie Misson, Kashchandra G. Raghothama, Ajay Jain, et al.Juliette Jouhet, Maryse A. Block, Richard Bligny, Philippe Ortet, Audrey Creff, Shauna Somerville, Norbert Rolland, Patrick Doumas, Philippe Nacry, Luis Herrerra-Estrella, Laurent Nussaume, Marie-Christine Thibaud posted to arabidopsis chip by xwbcn on 2006-03-25 16:16:58 as along with 1 person byy
	Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis. [My Copy] Physiol Genomics, Vol. 17, No. 2. (13 April 2004), pp. 87-100. by J. Yazaki, Z. Shimatani, A. Hashimoto, et al.Y. Nagata, F. Fujii, K. Kojima, K. Suzuki, T. Taya, M. Tonouchi, C. Nelson, A. Nakagawa, Y. Otomo, K. Murakami, K. Matsubara, J. Kawai, P. Carninci, Y. Hayashizaki, S. Kikuchi posted to arabidopsis chip genome microarray motif rice by xwbcn on 2006-03-07 09:50:02 as
	A microarray analysis of the rice transcriptome and its comparison to Arabidopsis. [My Copy] Genome Res, Vol. 15, No. 9. (September 2005), pp. 1274-1283. by L. Ma, C. Chen, X. Liu, et al.Y. Jiao, N. Su, L. Li, X. Wang, M. Cao, N. Sun, X. Zhang, J. Bao, J. Li, S. Pedersen, L. Bolund, H. Zhao, L. Yuan, G. K. Wong, J. Wang, X. W. Deng, J. Wang posted to arabidopsis chip genome rice by xwbcn on 2006-01-14 07:15:17 as
	NCBI GEO: mining millions of expression profiles--database and tools. [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005) by T. Barrett, T. O. Suzek, D. B. Troup, et al.S. E. Wilhite, W. C. Ngau, P. Ledoux, D. Rudnev, A. E. Lash, W. Fujibuchi, R. Edgar posted to chip by xwbcn on 2005-12-26 09:13:38 as along with 4 people shikin balajis gpalidwor frohike

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arabidopsis	33
microarray	32
genome	27
evolution	24
rice	24
chip	20
motif	19
comparative_study	16
expression	15
human_genome	10
mitochondrial-permeability-transition	9
flowering	8
tf	8
transcriptome	8
genome_alignment	7
human	7
plants	7
co-expression	6
promoter	6
gene_family	5
heterosis	5
mirna	5
sfp	5
expression_platform	4
maize	4
mammal	4
method	4
plant	4
annotation	3
antisense	3
data_mining	3
disequilibrium_linkage	3
gene_ontology	3
networks	3
next_generation_sequencing	3
retrogene	3
sense	3
solexa	3
todo	3
yeast	3
alignment	2
allele_specific_expression	2
chip-seq	2
cold	2
interaction	2
natural_variation	2
pathway	2
pollen	2
regulation	2
tools	2
trans-regulatory	2
abiotic	1
association_mapping	1
baley	1
c	1
chip-chip	1
copy_number_varient	1
database	1
elegans	1
full-length_cdna	1
g	1
illumina	1
interactions	1
intron	1
i_totally_dont_understand	1
mads-box	1
median_polish	1
native_variation	1
networks-reconstruction	1
nutrient	1
phylogenetics	1
platform	1
polymorphism	1
primate	1
proteome	1
rank_based	1
regeneration	1
repeats	1
salicylic_acid	1
selection	1
shannon_entropy	1
starch	1
stress	1
system_biology	1
te	1
transposable_element	1
tumor	1

xwbcn's chip [20 articles] Export

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