xwbcn's genome [27 articles] Export

Recent papers added to xwbcn's library classified by the tag genome. You can also see everyone's genome.

	Single feature polymorphisms between two rice cultivars detected using a median polish method [My Copy] TAG Theoretical and Applied Genetics by Weibo Xie, Ying Chen, Gang Zhou, et al.Lei Wang, Chengjun Zhang, Jianwei Zhang, Jinghua Xiao, Tong Zhu, Qifa Zhang posted to genome median_polish method microarray rice sfp by xwbcn on 2009-05-30 15:50:15 as
	Multiple whole-genome alignments without a reference organism [My Copy] Genome Research, Vol. 19, No. 4. (28 April 2009), pp. 682-689. by Inna Dubchak, Alexander Poliakov, Andrey Kislyuk, Michael Brudno posted to alignment annotation genome genome_alignment by xwbcn on 2009-04-08 05:41:46 as along with 12 people fstrozzi GustavoLacerda michaelbarton mlangill dakelley Neeperando zwang nyyu djkt semrich azazello mhamada
	Compressed indexing and local alignment of DNA [My Copy] Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 791-797. by T. W. Lam, W. K. Sung, S. L. Tam, C. K. Wong, S. M. Yiu posted to alignment genome solexa by xwbcn on 2008-11-27 03:10:10 as along with 6 people gbenson n00c druvus antonkratz cap1 lp2
	Transposable element annotation of the rice genome. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 2. (22 January 2004), pp. 155-160. by Nikoleta Juretic, Thomas E. Bureau, Richard M. Bruskiewich posted to annotation genome rice transposable_element by xwbcn on 2008-09-23 10:59:18 as along with 3 people operon michaelbarton urgi
	Consensus by democracy. Using meta-analyses of microarray and genomic data to model the cold acclimation signaling pathway in Arabidopsis. [My Copy] Plant Physiol, Vol. 141, No. 4. (August 2006), pp. 1219-1232. by C. Benedict, M. Geisler, J. Trygg, N. Huner, V. Hurry posted to arabidopsis chip cold comparative_study data_mining expression genome microarray motif networks transcriptome by xwbcn on 2007-06-11 15:16:05 as along with 1 person natstreet
	Identification of plant promoter constituents by analysis of local distribution of short sequences [My Copy] BMC Genomics, Vol. 8, No. 1. (08 March 2007), 67. by Yoshiharu Yamamoto, Hiroyuki Ichida, Minami Matsui, et al.Junichi Obokata, Tetsuya Sakurai, Masakazu Satou, Motoaki Seki, Kazuo Shinozaki, Tomoko Abe posted to arabidopsis comparative_study g genome motif promoter rice by xwbcn on 2007-05-02 08:08:59 as along with 6 people and 1 group dandaman kengg saru byy Jporci natstreet Plantandetc
	Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis [My Copy] Genome Biology, Vol. 8 (11 January 2007), R7. by Rodrigo A. Gutierrez, Laurence Lejay, Alexis Dean, Francesca Chiaromonte, Dennis E. Shasha, Gloria M. Coruzzi posted to arabidopsis chip comparative_study expression gene_ontology genome microarray networks transcriptome by xwbcn on 2007-03-24 08:24:08 as along with 3 people and 1 group kengg joseph_x_zhou natstreet bioNetwork_sysBio
	Single feature polymorphism discovery in rice. [My Copy] PLoS ONE, Vol. 2 (2007) by R. Kumar, J. Qiu, T. Joshi, B. Valliyodan, D. Xu, H. T. Nguyen posted to chip genome plant plants rice sfp by xwbcn on 2007-03-22 06:48:35 as along with 1 person natstreet
	From the Cover: Overdominant quantitative trait loci for yield and fitness in tomato [My Copy] PNAS, Vol. 103, No. 35. (29 August 2006), pp. 12981-12986. by Yaniv Semel, Jonathan Nissenbaum, Naama Menda, et al.Michael Zinder, Uri Krieger, Noa Issman, Tzili Pleban, Zachary Lippman, Amit Gur, Dani Zamir posted to expression genome heterosis by xwbcn on 2007-02-28 11:02:59 as
	Tissue-driven hypothesis of genomic evolution and sequence-expression correlations [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 8. (20 February 2007), pp. 2779-2784. by Xun Gu, Zhixi Su posted to evolution expression gene_family genome microarray by xwbcn on 2007-02-25 15:03:41 as along with 7 people aktas jeremymiller gpalidwor shigepong cjeans ghattem balicea
	Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data [My Copy] BMC Bioinformatics, Vol. 7 (04 July 2006), 330. by Seon-Young Kim, Yongsung Kim posted to tf promoter microarray mammal human_genome genome expression chip by xwbcn on 2007-01-13 04:28:37 as along with 3 people heliopais jfr Ao_Li2007
	Large-Scale cis-Element Detection by Analysis of Correlated Expression and Sequence Conservation between Arabidopsis and Brassica oleracea [My Copy] Plant Physiol., Vol. 142, No. 4. (1 December 2006), pp. 1589-1602. by Georg Haberer, Michael T. Mader, Peter Kosarev, Manuel Spannagl, Li Yang, Klaus F. X. Mayer posted to arabidopsis chip comparative_study genome microarray motif promoter by xwbcn on 2006-10-13 02:53:11 as along with 5 people and 1 group operon dpollard kengg nklee xili03 EisenLab
	Antisense transcripts with rice full-length cDNAs. [My Copy] Genome Biol, Vol. 5, No. 1. (2003) by N. Osato, H. Yamada, K. Satoh, et al.H. Ooka, M. Yamamoto, K. Suzuki, J. Kawai, P. Carninci, Y. Ohtomo, K. Murakami, K. Matsubara, S. Kikuchi, Y. Hayashizaki posted to antisense expression genome rice sense by xwbcn on 2006-10-08 13:59:54 as
	Variation in synonymous codon use and DNA polymorphism within the Drosophila genome [My Copy] Journal of Evolutionary Biology, Vol. 19, No. 1. (January 2006), pp. 1-11. by N. Bierne, A. Eyre-Walker posted to evolution genome by xwbcn on 2006-09-18 04:43:50 as
	Genome-wide analysis of mammalian promoter architecture and evolution. [My Copy] Nature genetics, Vol. 38, No. 6. (28 June 2006), pp. 626-635. by Piero Carninci, Albin Sandelin, Boris Lenhard, et al.Shintaro Katayama, Kazuro Shimokawa, Jasmina Ponjavic, Colin A. Semple, Martin S. Taylor, Pär G. Engström, Martin C. Frith, Alistair R. Forrest, Wynand B. Alkema, Sin Lam L. Tan, Charles Plessy, Rimantas Kodzius, Timothy Ravasi, Takeya Kasukawa, Shiro Fukuda, Mutsumi Kanamori-Katayama, Yayoi Kitazume, Hideya Kawaji, Chikatoshi Kai, Mari Nakamura, Hideaki Konno, Kenji Nakano, Salim Mottagui-Tabar, Peter Arner, Alessandra Chesi, Stefano Gustincich, Francesca Persichetti, Harukazu Suzuki, Sean M. Grimmond, Christine A. Wells, Valerio Orlando, Claes Wahlestedt, Edison T. Liu, Matthias Harbers, Jun Kawai, Vladimir B. Bajic, David A. Hume, Yoshihide Hayashizaki posted to genome human motif promoter by xwbcn on 2006-07-16 13:02:13 as along with 19 people and 4 groups rsaito guhjy antonkratz athma inesdesantiago rpatward hagechouchin443 nklee djkt jfr dchughes tabu samal nickluscombe xiaobeizhao cisevol eviledv gjuggler jasonflannick G4ID EBI-regulation Genetics-of-Gambling cis-regulatory-evolution
	Comparative genomics: Difference of expression [My Copy] Nature, Vol. 440, No. 7081. (March 2006), pp. 161-161. by Rasmus Nielsen posted to comparative_study genome human_genome microarray by xwbcn on 2006-04-09 09:01:17 as along with 4 people and 3 groups stevanspringer dchughes echinotrix balicea FAB-lab G4ID Genetics-of-Gambling
	The evolutionary fate of MULE-mediated duplications of host gene fragments in rice. [My Copy] Genome Res, Vol. 15, No. 9. (September 2005), pp. 1292-1297. by N. Juretic, D. R. Hoen, M. L. Huynh, P. M. Harrison, T. E. Bureau posted to evolution genome repeats retrogene rice by xwbcn on 2006-03-28 15:27:12 as
	Genome-Wide Prediction of C. elegans Genetic Interactions [My Copy] Science, Vol. 311, No. 5766. (10 March 2006), pp. 1481-1484. by Weiwei Zhong, Paul W. Sternberg posted to c elegans genome genome_alignment human_genome interactions by xwbcn on 2006-03-11 04:12:04 as along with 12 people and 3 groups thegoose2 benjaminsb nedwards tharris lp2 lfriedl indigoviolet nirfriedman patrycjam patrycja_missiuro mingzhi carlk C. elegans / WormBase kdl EisenLab
	Computational evidence for hundreds of non-conserved plant microRNAs. [My Copy] BMC Genomics, Vol. 6 (13 September 2005) by M. Lindow, A. Krogh posted to evolution genome mirna motif by xwbcn on 2006-03-09 12:14:52 as along with 5 people and 3 groups natstreet jwortman kaspermunch mortenlindow cdawson Bioinformatics microRNA GIG
	Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis. [My Copy] Physiol Genomics, Vol. 17, No. 2. (13 April 2004), pp. 87-100. by J. Yazaki, Z. Shimatani, A. Hashimoto, et al.Y. Nagata, F. Fujii, K. Kojima, K. Suzuki, T. Taya, M. Tonouchi, C. Nelson, A. Nakagawa, Y. Otomo, K. Murakami, K. Matsubara, J. Kawai, P. Carninci, Y. Hayashizaki, S. Kikuchi posted to arabidopsis chip genome microarray motif rice by xwbcn on 2006-03-07 09:50:02 as
	The Origins of Eukaryotic Gene Structure [My Copy] Mol Biol Evol, Vol. 23, No. 2. (1 February 2006), pp. 450-468. by Michael Lynch posted to evolution genome by xwbcn on 2006-03-05 08:52:59 as along with 26 people and 10 groups operon daveGerrard inesdesantiago Ema karbak stevanspringer dayjm Ayest indigoviolet tny dchughes petecl penka mtagaya madhadron cmm brixtonmc zhangli msierk brettc web20student BioNica krishnaJCSG timflutre jwestbrook ArtemPankin BergmanLab EisenLab Computational_Systems_Biology Nie FAB-lab G4ID Bioinformatics_MDACC evo-devo King_Lab Genetics-of-Gambling
	Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication [My Copy] PNAS, Vol. 103, No. 8. (21 February 2006), pp. 2730-2735. by Brad A. Chapman, John E. Bowers, Frank A. Feltus, Andrew H. Paterson posted to evolution gene_family genome plant by xwbcn on 2006-02-25 11:19:20 as along with 1 person and 1 group cmm FAB-lab
	Reliable prediction of transcription factor binding sites by phylogenetic verification. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 47. (22 November 2005), pp. 16945-16950. by X. Li, S. Zhong, W. H. Wong posted to genome genome_alignment motif by xwbcn on 2006-02-25 11:11:02 as along with 2 people postrational nklee
	Genome-wide Prediction of Mammalian Enhancers Based on Analysis of Transcription-Factor Binding Affinity [My Copy] Cell, Vol. 124, No. 1. (13 January 2006), pp. 47-59. by O. Hallikas, K. Palin, N. Sinjushina, et al.R. Rautiainen, J. Partanen, E. Ukkonen, J. Taipale posted to genome human_genome motif by xwbcn on 2006-02-20 02:14:04 as along with 16 people and 5 groups absterga xingxu cisstem Terkko kaarsinogen tuck brant dchughes nickluscombe olympos cabbagezs karfunkel maximilianh heliopais oelemento emptyhb Bioinformatics EisenLab G4ID EBI-regulation Genetics-of-Gambling
	Systematic Discovery of New Recognition Peptides Mediating Protein Interaction Networks. [My Copy] PLoS Biol, Vol. 3, No. 12. (15 November 2005) by Victor Neduva, Rune Linding, Isabelle Su-Angrand, et al.Alexander Stark, Federico de D. Masi, Toby J J. Gibson, Joe Lewis, Luis Serrano, Robert B B. Russell posted to gene_family genome motif by xwbcn on 2006-02-18 11:03:59 as along with 10 people and 1 group rklancer okarsligil bicko Ayest drastic ezotenko grahamc Evangelia oelemento chad_davis Bioinformatics
	A microarray analysis of the rice transcriptome and its comparison to Arabidopsis. [My Copy] Genome Res, Vol. 15, No. 9. (September 2005), pp. 1274-1283. by L. Ma, C. Chen, X. Liu, et al.Y. Jiao, N. Su, L. Li, X. Wang, M. Cao, N. Sun, X. Zhang, J. Bao, J. Li, S. Pedersen, L. Bolund, H. Zhao, L. Yuan, G. K. Wong, J. Wang, X. W. Deng, J. Wang posted to arabidopsis chip genome rice by xwbcn on 2006-01-14 07:15:17 as
	Genome-wide transcription analyses in rice using tiling microarrays. [My Copy] Nat Genet (20 December 2005) by Lei Li, Xiangfeng Wang, Viktor Stolc, et al.Xueyong Li, Dongfen Zhang, Ning Su, Waraporn Tongprasit, Songgang Li, Zhukuan Cheng, Jun Wang, Xing Wang W. Deng posted to genome rice by xwbcn on 2005-12-26 02:43:05 as along with 2 people bartjacobse balicea

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arabidopsis	33
microarray	32
genome	27
evolution	24
rice	24
chip	20
motif	19
comparative_study	16
expression	15
human_genome	10
mitochondrial-permeability-transition	9
flowering	8
tf	8
transcriptome	8
genome_alignment	7
human	7
plants	7
co-expression	6
promoter	6
gene_family	5
heterosis	5
mirna	5
sfp	5
expression_platform	4
maize	4
mammal	4
method	4
plant	4
annotation	3
antisense	3
data_mining	3
disequilibrium_linkage	3
gene_ontology	3
networks	3
next_generation_sequencing	3
retrogene	3
sense	3
solexa	3
todo	3
yeast	3
alignment	2
allele_specific_expression	2
chip-seq	2
cold	2
interaction	2
natural_variation	2
pathway	2
pollen	2
regulation	2
tools	2
trans-regulatory	2
abiotic	1
association_mapping	1
baley	1
c	1
chip-chip	1
copy_number_varient	1
database	1
elegans	1
full-length_cdna	1
g	1
illumina	1
interactions	1
intron	1
i_totally_dont_understand	1
mads-box	1
median_polish	1
native_variation	1
networks-reconstruction	1
nutrient	1
phylogenetics	1
platform	1
polymorphism	1
primate	1
proteome	1
rank_based	1
regeneration	1
repeats	1
salicylic_acid	1
selection	1
shannon_entropy	1
starch	1
stress	1
system_biology	1
te	1
transposable_element	1
tumor	1

xwbcn's genome [27 articles] Export

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