xwbcn's motif [19 articles] Export

Recent papers added to xwbcn's library classified by the tag motif. You can also see everyone's motif.

	High-resolution DNA-binding specificity analysis of yeast transcription factors [My Copy] Genome Research, Vol. 19, No. 4. (21 April 2009), pp. 556-566. by Cong Zhu, Kelsey J. R. P. Byers, Rachel P. McCord, et al.Zhenwei Shi, Michael F. Berger, Daniel E. Newburger, Katrina Saulrieta, Zachary Smith, Mita V. Shah, Mathangi Radhakrishnan, Anthony A. Philippakis, Yanhui Hu, Federico De Masi, Marcin Pacek, Andreas Rolfs, Tal Murthy, Joshua LaBaer, Martha L. Bulyk posted to chip-chip chip-seq motif tf trans-regulatory yeast by xwbcn on 2009-04-08 05:42:43 as along with 9 people matted austin_mcdonald siebert dolchan rpatward absterga djkt kristallreiner aalibes
	Design and analysis of ChIP-seq experiments for DNA-binding proteins. [My Copy] Nature biotechnology, Vol. 26, No. 12. (16 December 2008), pp. 1351-1359. by Peter V. Kharchenko, Michael Y. Tolstorukov, Peter J. Park posted to chip-seq motif by xwbcn on 2008-12-15 10:53:15 as along with 18 people and 2 groups stubrown guhjy gdb tonamswish ewilban1 coela ekotelnikova jfr floatingpoint idonaldson inesdesantiago WanderingAengus vplagnol fpattyn mutagenic kengg rschulz ghattem KCL & UCL Bioinformatics SIMR bioinformatics
	A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes. [My Copy] J Comput Biol, Vol. 9, No. 2. (2002), pp. 447-464. by G. Thijs, K. Marchal, M. Lescot, et al.S. Rombauts, B. De Moor, P. Rouzé, Y. Moreau posted to co-expression expression motif by xwbcn on 2008-09-23 10:57:54 as along with 2 people wowalz natstreet
	Consensus by democracy. Using meta-analyses of microarray and genomic data to model the cold acclimation signaling pathway in Arabidopsis. [My Copy] Plant Physiol, Vol. 141, No. 4. (August 2006), pp. 1219-1232. by C. Benedict, M. Geisler, J. Trygg, N. Huner, V. Hurry posted to arabidopsis chip cold comparative_study data_mining expression genome microarray motif networks transcriptome by xwbcn on 2007-06-11 15:16:05 as along with 1 person natstreet
	Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 17. (24 April 2007), pp. 7145-7150. by X. Xie, T. S. Mikkelsen, A. Gnirke, K. Lindblad-Toh, M. Kellis, E. S. Lander posted to genome_alignment human human_genome mammal motif networks tf by xwbcn on 2007-05-11 09:54:09 as along with 6 people and 1 group gderwin cisevol aprasad olympos rschulz bpcusack JLab
	Identification of plant promoter constituents by analysis of local distribution of short sequences [My Copy] BMC Genomics, Vol. 8, No. 1. (08 March 2007), 67. by Yoshiharu Yamamoto, Hiroyuki Ichida, Minami Matsui, et al.Junichi Obokata, Tetsuya Sakurai, Masakazu Satou, Motoaki Seki, Kazuo Shinozaki, Tomoko Abe posted to arabidopsis comparative_study g genome motif promoter rice by xwbcn on 2007-05-02 08:08:59 as along with 6 people and 1 group dandaman kengg saru byy Jporci natstreet Plantandetc
	Large-scale Cis-element Detection by Analysis of Correlated Expression and Sequence Conservation between Arabidopsis and Brassica oleracea. [My Copy] Plant Physiol (6 October 2006) by Georg Haberer, Michael T T. Mader, Peter Kosarev, Manuel Spannagl, Li Yang, Klaus Fx F. Mayer posted to arabidopsis chip comparative_study genome microarray motif promoter by xwbcn on 2006-10-13 02:53:11 as along with 4 people and 1 group dpollard kengg nklee xili03 EisenLab
	Genome-wide analysis of mammalian promoter architecture and evolution. [My Copy] Nature genetics, Vol. 38, No. 6. (28 June 2006), pp. 626-635. by Piero Carninci, Albin Sandelin, Boris Lenhard, et al.Shintaro Katayama, Kazuro Shimokawa, Jasmina Ponjavic, Colin A. Semple, Martin S. Taylor, Pär G. Engström, Martin C. Frith, Alistair R. Forrest, Wynand B. Alkema, Sin Lam L. Tan, Charles Plessy, Rimantas Kodzius, Timothy Ravasi, Takeya Kasukawa, Shiro Fukuda, Mutsumi Kanamori-Katayama, Yayoi Kitazume, Hideya Kawaji, Chikatoshi Kai, Mari Nakamura, Hideaki Konno, Kenji Nakano, Salim Mottagui-Tabar, Peter Arner, Alessandra Chesi, Stefano Gustincich, Francesca Persichetti, Harukazu Suzuki, Sean M. Grimmond, Christine A. Wells, Valerio Orlando, Claes Wahlestedt, Edison T. Liu, Matthias Harbers, Jun Kawai, Vladimir B. Bajic, David A. Hume, Yoshihide Hayashizaki posted to genome human motif promoter by xwbcn on 2006-07-16 13:02:13 as along with 19 people and 4 groups rsaito guhjy antonkratz athma inesdesantiago rpatward hagechouchin443 nklee djkt jfr dchughes tabu samal nickluscombe xiaobeizhao cisevol eviledv gjuggler jasonflannick G4ID EBI-regulation Genetics-of-Gambling cis-regulatory-evolution
	Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana. [My Copy] Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3074-3081. by W. Zhang, J. Ruan, T. H. Ho, Y. You, T. Yu, R. S. Quatrano posted to arabidopsis microarray motif by xwbcn on 2006-05-02 18:55:11 as along with 3 people yasuf imouthesmp natstreet
	CARRIE web service: automated transcriptional regulatory network inference and interactive analysis. [My Copy] Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004) by P. M. Haverty, M. C. Frith, Z. Weng posted to database microarray motif by xwbcn on 2006-04-23 18:55:37 as along with 2 people dquest heliopais
	Predicting gene expression from sequence. [My Copy] Cell, Vol. 117, No. 2. (16 April 2004), pp. 185-198. by M. A. Beer, S. Tavazoie posted to microarray motif tf by xwbcn on 2006-04-05 03:17:26 as along with 12 people and 6 groups rsaito thegoose2 winterschlaefer tharris ana adepace nickluscombe noano koller jrest phoenixzxl klo TranscriptionalRegulationWithThermodynamicModels C. elegans / WormBase structural_bioinformatics Bioinformatics EisenLab EBI-regulation
	Identifying regulatory networks by combinatorial analysis of promoter elements [My Copy] Nature Genetics, Vol. 29, No. 2. (10 September 2001), pp. 153-159. by Yitzhak Pilpel, Priya Sudarsanam, George M. Church posted to microarray motif tf by xwbcn on 2006-04-05 03:16:44 as along with 8 people and 1 group ipark-kaist farhat imouthesmp troels_marstrand wnpx noano koller windman83 Bioinformatics
	Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. [My Copy] Proc Natl Acad Sci U S A (31 March 2006) by Ji-Young Y. Lee, Juliette Colinas, Jean Y Y. Wang, Daniel Mace, Uwe Ohler, Philip N N. Benfey posted to arabidopsis microarray mirna motif tf by xwbcn on 2006-04-05 02:16:36 as along with 3 people and 1 group megraw cdawson dlmace GIG
	Establishing glucose- and ABA-regulated transcription networks in Arabidopsis by microarray analysis and promoter classification using a Relevance Vector Machine. [My Copy] Genome Res (19 January 2006) by Yunhai Li, Kee Khoon K. Lee, Sean Walsh, et al.Caroline Smith, Sophie Hadingham, Karim Sorefan, Gavin Cawley, Michael W W. Bevan posted to arabidopsis chip motif by xwbcn on 2006-04-04 14:20:09 as
	Computational evidence for hundreds of non-conserved plant microRNAs. [My Copy] BMC Genomics, Vol. 6 (13 September 2005) by M. Lindow, A. Krogh posted to evolution genome mirna motif by xwbcn on 2006-03-09 12:14:52 as along with 5 people and 3 groups natstreet jwortman kaspermunch mortenlindow cdawson Bioinformatics microRNA GIG
	Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis. [My Copy] Physiol Genomics, Vol. 17, No. 2. (13 April 2004), pp. 87-100. by J. Yazaki, Z. Shimatani, A. Hashimoto, et al.Y. Nagata, F. Fujii, K. Kojima, K. Suzuki, T. Taya, M. Tonouchi, C. Nelson, A. Nakagawa, Y. Otomo, K. Murakami, K. Matsubara, J. Kawai, P. Carninci, Y. Hayashizaki, S. Kikuchi posted to arabidopsis chip genome microarray motif rice by xwbcn on 2006-03-07 09:50:02 as
	Reliable prediction of transcription factor binding sites by phylogenetic verification. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 47. (22 November 2005), pp. 16945-16950. by X. Li, S. Zhong, W. H. Wong posted to genome genome_alignment motif by xwbcn on 2006-02-25 11:11:02 as along with 2 people postrational nklee
	Genome-wide Prediction of Mammalian Enhancers Based on Analysis of Transcription-Factor Binding Affinity [My Copy] Cell, Vol. 124, No. 1. (13 January 2006), pp. 47-59. by O. Hallikas, K. Palin, N. Sinjushina, et al.R. Rautiainen, J. Partanen, E. Ukkonen, J. Taipale posted to genome human_genome motif by xwbcn on 2006-02-20 02:14:04 as along with 16 people and 5 groups absterga xingxu cisstem Terkko kaarsinogen tuck brant dchughes nickluscombe olympos cabbagezs karfunkel maximilianh heliopais oelemento emptyhb Bioinformatics EisenLab G4ID EBI-regulation Genetics-of-Gambling
	Systematic Discovery of New Recognition Peptides Mediating Protein Interaction Networks. [My Copy] PLoS Biol, Vol. 3, No. 12. (15 November 2005) by Victor Neduva, Rune Linding, Isabelle Su-Angrand, et al.Alexander Stark, Federico de D. Masi, Toby J J. Gibson, Joe Lewis, Luis Serrano, Robert B B. Russell posted to gene_family genome motif by xwbcn on 2006-02-18 11:03:59 as along with 10 people and 1 group rklancer okarsligil bicko Ayest drastic ezotenko grahamc Evangelia oelemento chad_davis Bioinformatics

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arabidopsis	33
microarray	32
genome	27
evolution	24
rice	24
chip	20
motif	19
comparative_study	16
expression	15
human_genome	10
mitochondrial-permeability-transition	9
flowering	8
tf	8
transcriptome	8
genome_alignment	7
human	7
plants	7
co-expression	6
promoter	6
gene_family	5
heterosis	5
mirna	5
sfp	5
expression_platform	4
maize	4
mammal	4
method	4
plant	4
annotation	3
antisense	3
data_mining	3
disequilibrium_linkage	3
gene_ontology	3
networks	3
next_generation_sequencing	3
retrogene	3
sense	3
solexa	3
todo	3
yeast	3
alignment	2
allele_specific_expression	2
chip-seq	2
cold	2
interaction	2
natural_variation	2
pathway	2
pollen	2
regulation	2
tools	2
trans-regulatory	2
abiotic	1
association_mapping	1
baley	1
c	1
chip-chip	1
copy_number_varient	1
database	1
elegans	1
full-length_cdna	1
g	1
illumina	1
interactions	1
intron	1
i_totally_dont_understand	1
mads-box	1
median_polish	1
native_variation	1
networks-reconstruction	1
nutrient	1
phylogenetics	1
platform	1
polymorphism	1
primate	1
proteome	1
rank_based	1
regeneration	1
repeats	1
salicylic_acid	1
selection	1
shannon_entropy	1
starch	1
stress	1
system_biology	1
te	1
transposable_element	1
tumor	1

xwbcn's motif [19 articles] Export

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