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	Identifying protein-coding genes in genomic sequences [My Copy] Genome Biology, Vol. 10, No. 1. (30 January 2009), 201. by Jennifer Harrow, Alinda Nagy, Alexandre Reymond, et al.Tyler Alioto, Laszlo Patthy, Stylianos Antonarakis, Roderic Guigo posted to sequencing review by jfr to the group Bioinformatics on 2009-11-08 22:20:40 as along with 14 people and 1 group antonkratz robfsouza nlapalu renatomilani ArtemPankin hpaces guhjy michaelbarton idoerg jm12 pawelszczesny natstreet barriot druvus Khavkin's lab
	Small RNA: A Large Contributor to Carcinogenesis? [My Copy] Journal of Gastrointestinal Surgery, Vol. 13, No. 7. (1 July 2009), pp. 1379-1388. by Imran Bhatti, Andrew Lee, Jonathan Lund, Michael Larvin posted to review mirna by jfr to the group microRNA on 2009-11-08 22:14:40 as along with 1 person guhjy
	dbSMR: a novel resource of genome-wide SNPs affecting microRNA mediated regulation [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 108. by Manoj Hariharan, Vinod Scaria, Samir Brahmachari posted to snp mirna_regulation mirna database by jfr to the group microRNA on 2009-11-08 22:08:30 as along with 6 people songpku guhjy pengchy daforerog lwaldron ealloza
	Common genetic variants in pre-microRNAs are associated with risk of coal workers' pneumoconiosis. [My Copy] Journal of human genetics (30 October 2009) by Meilin Wang, Yang Ye, Haiyang Qian, et al.Zhifang Song, Xiaomin Jia, Zhengdong Zhang, Jianwei Zhou, Chunhui Ni posted to snp pre-microrna polymorphism mirna microrna by songpku on 2009-11-07 17:56:34 as
	MicroRNAs and their regulatory roles in animals and plants. [My Copy] Journal of cellular physiology, Vol. 210, No. 2. (9 February 2007), pp. 279-289. by Baohong Zhang, Qinglian Wang, Xiaoping Pan posted to mirna by bartjacobse on 2009-11-07 12:07:27 as along with 2 people guhjy tardigrade
	Saint: a lightweight integration environment for model annotation [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3026-3027. by Allyson L. Lister, Matthew Pocock, Morgan Taschuk, Anil Wipat posted to sbml model lightweight integration environment annotation by dswan to the group Bioinformatics on 2009-11-06 17:27:20 as along with 2 people dullhunk allysonlister
	ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 358. by Enrico Glaab, Jonathan Garibaldi, Natalio Krasnogor posted to web study normalisation modular mining microarray meta cross array application analysis by dswan to the group Bioinformatics on 2009-11-06 17:04:14 as along with 2 people heliopais neils
	Getting Started in Gene Expression Microarray Analysis [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (30 October 2009), e1000543. by Donna K. Slonim, Itai Yanai posted to tutorial microarray gene expression analysis by dswan to the group Bioinformatics on 2009-11-06 16:44:05 as along with 5 people iskathy Fournier34 renatomilani ptrobajo heliopais
	Identification of viral microRNAs expressed in human sacral ganglia latently infected with herpes simplex virus 2. [My Copy] Journal of virology (4 November 2009) by Jennifer L. Umbach, Kening Wang, Shuang Tang, et al.Philip R. Krause, Erik K. Mont, Jeffrey I. Cohen, Bryan R. Cullen posted to virus mirna by samgj on 2009-11-06 12:08:33 as
	Promotion of embryonic cortico-cerebral neuronogenesis by miR-124. [My Copy] Neural development, Vol. 4, No. 1. (2 November 2009) by Nicola Antonio A. Maiorano, Antonello Mallamaci posted to mirna function dev brain by valeriehilgers on 2009-11-06 07:20:08 as along with 1 person daforerog
	The microRNAs miR-373 and miR-520c promote tumour invasion and metastasis [My Copy] Nat Cell Biol, Vol. 10, No. 2. (13 January 2008), pp. 202-210. by Qihong Huang, Kiranmai Gumireddy, Mariette Schrier, et al.Carlos le Sage, Remco Nagel, Suresh Nair, David A. Egan, Anping Li, Guanghua Huang, Andres J. Klein-Szanto, Phyllis A. Gimotty, Dionyssios Katsaros, George Coukos, Lin Zhang, Ellen Pure, Reuven Agami posted to mirna micrna metastasis cancer breast by songpku on 2009-11-05 16:17:58 as along with 2 people valeriehilgers lp2
	Concomitant suppression of three target genes can explain the impact of a microRNA on metastasis [My Copy] Genes & Development (29 October 2009) by Scott Valastyan, Nathan Benaich, Amelia Chang, Ferenc Reinhardt, Robert A. Weinberg posted to mirna microrna metastasis by songpku on 2009-11-05 16:07:26 as along with 3 people and 1 group pattersonee heliopais valeriehilgers microRNA
	miR-24 Inhibits Cell Proliferation by Targeting E2F2, MYC, and Other Cell-Cycle Genes via Binding to Seedless 32UTR MicroRNA Recognition Elements [My Copy] Vol. 35, No. 5. (11 September 2009), pp. 610-625. by Ashish Lal, Francisco Navarro, Christopher A. Maher, et al.Laura E. Maliszewski, Nan Yan, Elizabeth O'Day, Dipanjan Chowdhury, Derek M. Dykxhoorn, Perry Tsai, Oliver Hofmann, Kevin G. Becker, Myriam Gorospe, Winston Hide, Judy Lieberman posted to mirna mir-24 microrna by songpku on 2009-11-05 15:06:21 as
	Most mammalian mRNAs are conserved targets of microRNAs [My Copy] Genome Research, Vol. 19, No. 1. (27 January 2009), pp. 92-105. by Robin C. Friedman, Kyle K. Farh, Christopher B. Burge, David P. Bartel posted to mirna_targets mirna by giovenko on 2009-11-05 13:32:42 as along with 16 people and 2 groups gbloeb sterovetta gdb guhjy jfr qfwills pengchy druvus felsani heliopais dchughes valeriehilgers Stew fpattyn MSchipper samgj microRNA Bioinformatics - CRUK
	UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. [My Copy] Nucleic acids research (30 October 2009) by Giorgio Grillo, Antonio Turi, Flavio Licciulli, et al.Flavio Mignone, Sabino Liuni, Sandro Banfi, Vincenzo Alessandro A. Gennarino, David S. Horner, Giulio Pavesi, Ernesto Picardi, Graziano Pesole posted to silico mirna genomics find by daforerog on 2009-11-04 20:42:14 as along with 1 person and 1 group ppgardne Journal picks
	MicroRNA: Implications for Alzheimer Disease and other Human CNS Disorders. [My Copy] Current genomics, Vol. 10, No. 3. (May 2009), pp. 154-168. by Olivier C. Maes, Howard M. Chertkow, Eugenia Wang, Hyman M. Schipper posted to mirna find by daforerog on 2009-11-04 20:35:14 as along with 1 person valeriehilgers
	Non-coding RNAs: regulators of disease. [My Copy] The Journal of pathology (30 October 2009) by Ryan J. Taft, Ken C. Pang, Timothy R. Mercer, Marcel Dinger, John S. Mattick posted to mirna find by daforerog on 2009-11-04 20:27:25 as along with 1 person valeriehilgers
	Prediction and validation of conservative microRNAs of Solanum tuberosum L. [My Copy] Molecular biology reports (31 October 2009) by Wenzheng Yang, Xin Liu, Jianguang Zhang, Junli Feng, Chao Li, Jishuang Chen posted to mirna by samgj on 2009-11-04 16:14:01 as
	Identification of a novel microRNA cluster miR-193b-365 in multiple myeloma. [My Copy] Leukemia & lymphoma, Vol. 50, No. 11. (November 2009), pp. 1865-1871. by Kenji Unno, Ying Zhou, Todd Zimmerman, Leonidas C. Platanias, Amittha Wickrema posted to mirna by samgj on 2009-11-04 16:13:43 as
	Alternative Processing of Primary microRNA Transcripts by Drosha Generates 5′ End Variation of Mature microRNA [My Copy] PLoS ONE, Vol. 4, No. 10. (27 October 2009), e7566. by Haoquan Wu, Chunting Ye, Danielle Ramirez, N. Manjunath posted to mirna by hrogers on 2009-11-04 13:44:25 as along with 3 people and 1 group fishtank heliopais samgj microRNA
	Redefining MicroRNA Targets [My Copy] Vol. 19, No. 10. (26 May 2009), pp. 870-873. by Hervé Seitz posted to mirna_target mirna comment by jfr to the group microRNA on 2009-11-04 10:26:58 as along with 1 person hrogers
	Evidence for Antisense Transcription Associated with MicroRNA Target mRNAs in Arabidopsis [My Copy] PLoS Genet, Vol. 5, No. 4. (17 April 2009), e1000457. by Qing-Jun Luo, Manoj P. Samanta, Fatih Köksal, et al.Jaroslav Janda, David W. Galbraith, Casey R. Richardson, Fangqian Ou-Yang, Christopher D. Rock posted to mirna_target mirna antisense by jfr to the group microRNA on 2009-11-04 10:19:32 as along with 2 people gdb pengchy
	MicroRNAs in C. elegans Aging: Molecular Insurance for Robustness? [My Copy] Current genomics, Vol. 10, No. 3. (May 2009), pp. 144-153. by Carolina Ibáñez-Ventoso, Monica Driscoll posted to review mirna aging by valeriehilgers on 2009-11-04 01:44:08 as
	MicroRNA regulation in Ames dwarf mouse liver may contribute to delayed aging. [My Copy] Aging cell (30 October 2009) by David J. Bates, Na Li, Ruqiang Liang, et al.Harshini Sarojini, Jin An, Michal M. Masternak, Andrzej Bartke, Eugenia Wang posted to regulation mirna function aging by valeriehilgers on 2009-11-04 01:43:56 as
	Estrogen Regulation of MicroRNA Expression. [My Copy] Current genomics, Vol. 10, No. 3. (May 2009), pp. 169-183. by Carolyn M. Klinge posted to review mirna hormone by valeriehilgers on 2009-11-04 01:43:17 as
	Epigenetic Control of MicroRNA Expression and Aging. [My Copy] Current genomics, Vol. 10, No. 3. (May 2009), pp. 184-193. by Ruqiang Liang, David J. Bates, Eugenia Wang posted to review mirna chromatin aging by valeriehilgers on 2009-11-04 01:42:55 as
	The p53 Pathway Encounters the MicroRNA World. [My Copy] Current genomics, Vol. 10, No. 3. (May 2009), pp. 194-197. by Apana Takwi, Yong Li posted to review mirna cellcycle cancer by valeriehilgers on 2009-11-04 01:42:39 as along with 1 person yujiangwang
	Polymorphisms in human pre-miRNAs [My Copy] Biochemical and Biophysical Research Communications, Vol. 331, No. 4. (17 June 2005), pp. 1439-1444. by Naoharu Iwai, Hiroaki Naraba posted to pre-mirna polymorphism mirna microrna by songpku on 2009-11-03 20:18:53 as along with 1 person daforerog
	Common genetic variants in pre-microRNAs were associated with increased risk of breast cancer in Chinese women. [My Copy] Human mutation, Vol. 30, No. 1. (January 2009), pp. 79-84. by Zhibin Hu, Jie Liang, Zhanwei Wang, et al.Tian Tian, Xiaoyi Zhou, Jiaping Chen, Ruifen Miao, Yan Wang, Xinru Wang, Hongbing Shen posted to variant pre-microrna polymorphism mirna genetic cancer breast by songpku on 2009-11-03 20:06:27 as along with 1 person daforerog
	Genetic Variations in MicroRNA-Related Genes Are Novel Susceptibility Loci for Esophageal Cancer Risk [My Copy] Cancer Prev Res, Vol. 1, No. 6. (1 November 2008), pp. 460-469. by Yuanqing Ye, Kenneth K. Wang, Jian Gu, et al.Hushan Yang, Jie Lin, Jaffer A. Ajani, Xifeng Wu posted to variant mirna microrna genetic esophageal cancer by songpku on 2009-11-03 20:01:12 as along with 1 person daforerog
	Single Nucleotide Polymorphisms of microRNA Machinery Genes Modify the Risk of Renal Cell Carcinoma [My Copy] Clinical Cancer Research, Vol. 14, No. 23. (1 December 2008), pp. 7956-7962. by Yohei Horikawa, Christopher G. Wood, Hushan Yang, et al.Hua Zhao, Yuanqing Ye, Jian Gu, Jie Lin, Tomonori Habuchi, Xifeng Wu posted to snp renal mirna microrna cell carcinoma cancer by songpku on 2009-11-03 19:59:37 as along with 1 person daforerog
	Functional genetic variation of human miRNAs and phenotypic consequences [My Copy] Mammalian Genome, Vol. 19, No. 7. (1 August 2008), pp. 503-509. by Christelle Borel, Stylianos Antonarakis posted to snp polymorphism mirna microrna genetic by songpku on 2009-11-03 19:57:20 as along with 1 person daforerog
	SNPs in human miRNA genes affect biogenesis and function [My Copy] RNA, Vol. 15, No. 9. (17 September 2009), pp. 1640-1651. by Guihua Sun, Jin Yan, Katie Noltner, et al.Jinong Feng, Haitang Li, Daniel A. Sarkis, Steve S. Sommer, John J. Rossi posted to snps polymorphism mirna microrna genetic by songpku on 2009-11-03 19:55:26 as along with 2 people guhjy daforerog
	Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2CâmiRNA complexes and the degradation of miRNA targets [My Copy] Genome Research, Vol. 19, No. 11. (18 November 2009), pp. 2009-2020. by Jean Hausser, Markus Landthaler, Lukasz Jaskiewicz, Dimos Gaidatzis, Mihaela Zavolan posted to targets mirna by toni_marco on 2009-11-03 17:48:23 as along with 4 people and 1 group heliopais megraw valeriehilgers daforerog microRNA
	Repertoire and evolution of miRNA genes in four divergent nematode species [My Copy] Genome Research, Vol. 19, No. 11. (15 November 2009), pp. 2064-2074. by Elzo de Wit, Sam E. V. Linsen, Edwin Cuppen, Eugene Berezikov posted to nematode_species mirna by toni_marco on 2009-11-03 17:44:21 as along with 5 people and 1 group megraw heliopais valeriehilgers samgj bpcusack microRNA
	A mutation in the Arabidopsis mTERF-related plastid protein SOLDAT10 activates retrograde signaling and suppresses 1O2-induced cell death [My Copy] The Plant Journal, Vol. 60, No. 3., pp. 399-410. by Rasa Meskauskiene, Marco Wursch, Christophe Laloi, et al.Pierre-Alexandre Vidi, Nuria S. Coll, Felix Kessler, Aiswarya Baruah, Chanhong Kim, Klaus Apel
	Phosphorylation at S384 regulates the activity of the TaALMT1 malate transporter that underlies aluminum resistance in wheat [My Copy] The Plant Journal, Vol. 60, No. 3., pp. 411-423. by Ayalew Ligaba, Leon Kochian, Miguel Pineros
	Phytoene synthase activity controls the biosynthesis of carotenoids and the supply of their metabolic precursors in dark-grown Arabidopsis seedlings [My Copy] The Plant Journal, Vol. 60, No. 3., pp. 424-435. by Antia Rodriguez-Villalon, Elisabet Gas, Manuel Rodriguez-Concepcion
	Extracellular ATP is a regulator of pathogen defence in plants [My Copy] The Plant Journal, Vol. 60, No. 3., pp. 436-448. by Stephen Chivasa, Alex M. Murphy, John M. Hamilton, Keith Lindsey, John P. Carr, Antoni R. Slabas
	Phytochrome interacting factors 4 and 5 redundantly limit seedling de-etiolation in continuous far-red light [My Copy] The Plant Journal, Vol. 60, No. 3., pp. 449-461. by Severine Lorrain, Martine Trevisan, Sylvain Pradervand, Christian Fankhauser
	Two Arabidopsis 3-ketoacylCoA synthase genes, KCS20 and KCS2DAISY, are functionally redundant in cuticular wax and root suberin biosynthesis, but differentially controlled by osmotic stress [My Copy] The Plant Journal, Vol. 60, No. 3., pp. 462-475. by Saet-Buyl Lee, Su-Jin Jung, Young-Sam Go, et al.Hyun-Uk Kim, Jeong-Kook Kim, Hong-Joo Cho, Ohkmae K. Park, Mi-Chung Suh
	An AP2-type transcription factor, WRINKLED1, of Arabidopsis thaliana binds to the AW-box sequence conserved among proximal upstream regions of genes involved in fatty acid synthesis [My Copy] The Plant Journal, Vol. 60, No. 3., pp. 476-487. by Kenichiro Maeo, Tsuyoshi Tokuda, Atsuko Ayame, et al.Naoko Mitsui, Tsutae Kawai, Hironaka Tsukagoshi, Sumie Ishiguro, Kenzo Nakamura
	Molecular components required for the targeting of PEX7 to peroxisomes in Arabidopsis thaliana [My Copy] The Plant Journal, Vol. 60, No. 3., pp. 488-498. by Tanuja Singh, Makoto Hayashi, Shoji Mano, Yuko Arai, Shino Goto, Mikio Nishimura
	GDP-d-mannose 3,5-epimerase (GME) plays a key role at the intersection of ascorbate and non-cellulosic cell-wall biosynthesis in tomato [My Copy] The Plant Journal, Vol. 60, No. 3., pp. 499-508. by Louise Gilbert, Moftah Alhagdow, Adriano Nunes-Nesi, et al.Bernard Quemener, Fabienne Guillon, Brigitte Bouchet, Mireille Faurobert, Barbara Gouble, David Page, Virginie Garcia, Johann Petit, Rebecca Stevens, Mathilde Causse, Alisdair R. Fernie, Marc Lahaye, Christophe Rothan, Pierre Baldet
	A UVB-hypersensitive mutant in Arabidopsis thaliana is defective in the DNA damage response [My Copy] The Plant Journal, Vol. 60, No. 3., pp. 509-517. by Ayako N. Sakamoto, Vo Thi Thuong T. T. Lan, Vichai Puripunyavanich, et al.Yoshihiro Hase, Yuichiro Yokota, Naoya Shikazono, Mayu Nakagawa, Issay Narumi, Atsushi Tanaka
	The Arabidopsis ATRIP ortholog is required for a programmed response to replication inhibitors [My Copy] The Plant Journal, Vol. 60, No. 3., pp. 518-526. by Paul R. Sweeney, Anne B. Britt, Kevin M. Culligan
	Cell wall glucomannan in Arabidopsis is synthesised by CSLA glycosyltransferases, and influences the progression of embryogenesis [My Copy] The Plant Journal, Vol. 60, No. 3., pp. 527-538. by Florence Goubet, Christopher J. Barton, Jennifer C. Mortimer, et al.Xiaolan Yu, Zhinong Zhang, Godfrey P. Miles, Jenny Richens, Aaron H. Liepman, Keith Seffen, Paul Dupree
	Arabidopsis 14-3-3 lambda is a positive regulator of RPW8-mediated disease resistance [My Copy] The Plant Journal, Vol. 60, No. 3., pp. 539-550. by Xiaohua Yang, Wenming Wang, Mark Coleman, et al.Undral Orgil, Jiayue Feng, Xianfeng Ma, Robert Ferl, John G. Turner, Shunyuan Xiao
	Functional characterization of CCA1LHY homolog genes, PpCCA1a and PpCCA1b, in the moss Physcomitrella patens [My Copy] The Plant Journal, Vol. 60, No. 3., pp. 551-563. by Ryo Okada, Sayo Kondo, Santosh B. Satbhai, Nobutoshi Yamaguchi, Masashi Tsukuda, Setsuyuki Aoki
	The GLABRA2 homeodomain protein directly regulates CESA5 and XTH17 gene expression in Arabidopsis roots [My Copy] The Plant Journal, Vol. 60, No. 3., pp. 564-574. by Rumi Tominaga-Wada, Mineko Iwata, Junji Sugiyama, et al.Toshihisa Kotake, Tetsuya Ishida, Ryusuke Yokoyama, Kazuhiko Nishitani, Kiyotaka Okada, Takuji Wada

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arabidopsis	33
microarray	32
genome	27
evolution	24
rice	24
chip	20
motif	19
comparative_study	16
expression	15
human_genome	10
mitochondrial-permeability-transition	9
flowering	8
tf	8
transcriptome	8
genome_alignment	7
human	7
plants	7
co-expression	6
promoter	6
gene_family	5
heterosis	5
mirna	5
sfp	5
expression_platform	4
maize	4
mammal	4
method	4
plant	4
annotation	3
antisense	3
data_mining	3
disequilibrium_linkage	3
gene_ontology	3
networks	3
next_generation_sequencing	3
retrogene	3
sense	3
solexa	3
todo	3
yeast	3
alignment	2
allele_specific_expression	2
chip-seq	2
cold	2
interaction	2
natural_variation	2
pathway	2
pollen	2
regulation	2
tools	2
trans-regulatory	2
abiotic	1
association_mapping	1
baley	1
c	1
chip-chip	1
copy_number_varient	1
database	1
elegans	1
full-length_cdna	1
g	1
illumina	1
interactions	1
intron	1
i_totally_dont_understand	1
mads-box	1
median_polish	1
native_variation	1
networks-reconstruction	1
nutrient	1
phylogenetics	1
platform	1
polymorphism	1
primate	1
proteome	1
rank_based	1
regeneration	1
repeats	1
salicylic_acid	1
selection	1
shannon_entropy	1
starch	1
stress	1
system_biology	1
te	1
transposable_element	1
tumor	1

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