yalexeev's library 109 articles Export

	Molecular dynamics simulation of protein denaturation: Solvation of the hydrophobic cores and secondary structure of barnase [My Copy] Proc. Nati. Acad. Sci. USA by Amedeo posted to protein unfolding by yalexeev on 2008-11-18 14:52:37 as
	Purification and structural stability of the peach allergens Pru p 1 and Pru p 3 [My Copy] Molecular Nutrition & Food Research, Vol. 9999, No. 9999. (2008), NA. by Sonja Gaier, Justin Marsh, Christina Oberhuber, et al.Neil M. Rigby, Alison Lovegrove, Stefano Alessandri, Peter Briza, Christian Radauer, Laurian Zuidmeer, Ronald van Ree, Wolfgang Hemmer, Ana I. Sancho, Clare Mills, Karin Hoffmann-Sommergruber, Peter R. Shewry posted to allergen peach by yalexeev on 2008-11-18 14:49:30 as
	Dynameomics: Large-Scale Assessment of Native Protein Flexibility [My Copy] Protein Sci (16 September 2008), ps.037473.108. by Noah Benson, Valerie Daggett posted to protein unfolding by yalexeev on 2008-11-07 15:44:30 as
	Post-translational modification of barley LTP1b: The lipid adduct lies in the hydrophobic cavity and alters the protein dynamics [My Copy] FEBS posted to ltp by yalexeev on 2008-09-23 14:40:23 as
	Molecular dynamics simulations of biomolecules. [My Copy] Nat Struct Biol, Vol. 9, No. 9. (September 2002), pp. 646-652. by M. Karplus, J. A. McCammon posted to md by yalexeev on 2008-09-04 17:02:04 as along with 8 people saravan yxue onufriev adilson_mohr baaden aqeel RamuAnandakrishnan LamBras
	Targeted Molecular Dynamics Simulations of Protein Unfolding [My Copy] J. Phys. Chem. B, Vol. 104, No. 18. (11 May 2000), pp. 4511-4518. by P. Ferrara, J. Apostolakis, A. Caflisch posted to unfolding by yalexeev on 2008-07-16 11:28:47 as
	Acid-induced unfolding kinetics in simulated gastric digestion of proteins [My Copy] Regulatory Toxicology and Pharmacology, Vol. 46, No. 1. (October 2006), pp. 93-99. by Rod Herman, Yong Gao, Nicholas Storer posted to unfolding by yalexeev on 2008-07-16 10:49:35 as
	Structure and mechanism of the pepsin-like family of aspartic peptidases. [My Copy] Chemical reviews, Vol. 102, No. 12. (December 2002), pp. 4431-4458. by B. M. Dunn posted to pepsin by yalexeev on 2008-07-03 10:48:22 as
	A residue-specific NMR view of the non-cooperative unfolding of a molten globule [My Copy] Nat Struct Mol Biol, Vol. 4, No. 8. (1997), pp. 630-634. by Brenda A. Schulman, Peter S. Kim, Christopher M. Dobson, Christina Redfield posted to alpha-lactalbumin unfolding by yalexeev on 2008-06-17 12:11:08 as along with 1 person rph
	[alpha]-Lactalbumin forms a compact molten globule in the absence of disulfide bonds [My Copy] Nat Struct Mol Biol, Vol. 6, No. 10. (October 1999), pp. 948-952. by Christina Redfield, Brenda A. Schulman, Michael A. Milhollen, Peter S. Kim, Christopher M. Dobson posted to alpha-lactalbumin unfolding by yalexeev on 2008-06-17 12:08:30 as
	The 28-111 disulfide bond constrains the alpha-lactalbumin molten globule and weakens its cooperativity of folding. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 20. (28 September 1999), pp. 11283-11287. by Y. Luo, R. L. Baldwin posted to alpha-lactalbumin by yalexeev on 2008-06-10 13:09:46 as
	Structural relatedness of plant food allergens with specific reference to cross-reactive allergens: An in silico analysis [My Copy] Journal of Allergy and Clinical Immunology, Vol. 115, No. 1. (January 2005), pp. 163-170. by John A. Jenkins, Sam Griffiths-Jones, Peter R. Shewry, Heimo Breiteneder, E. N. Clare Mills posted to allergen by yalexeev on 2008-06-04 13:15:14 as
	Evolutionary distance from human homologs reflects allergenicity of animal food proteins. [My Copy] The Journal of allergy and clinical immunology, Vol. 120, No. 6. (December 2007), pp. 1399-1405. by J. A. Jenkins, H. Breiteneder, E. N. Mills posted to allergen by yalexeev on 2008-06-04 13:13:53 as
	Managing allergens in food [My Copy] (2007) by Clare Mills posted to allergen by yalexeev on 2008-05-29 16:51:49 as
	Plant food allergens [My Copy] (2004) by Clare Mills posted to allergen by yalexeev on 2008-05-29 16:50:24 as
	THz time domain spectroscopy of biomolecular conformational modes [My Copy] Physics in Medicine and Biology, Vol. 47, No. 21. (2002), pp. 3797-3805. by A. Markelz, S. Whitmire, J. Hillebrecht, R. Birge posted to infrared by yalexeev on 2008-05-07 15:13:17 as
	Applications of Terahertz Spectroscopy in Biosystems [My Copy] ChemPhysChem, Vol. 8, No. 17. (2007), pp. 2412-2431. by David F. Plusquellic, Karen Siegrist, Edwin J. Heilweil, Okan Esenturk posted to infrared by yalexeev on 2008-05-06 15:58:07 as
	Electrostatic interactions in the acid denaturation of alpha-lactalbumin determined by NMR. [My Copy] Protein science : a publication of the Protein Society, Vol. 7, No. 9. (September 1998), pp. 1930-1938. by S. Kim, J. Baum posted to alpha-lactalbumin by yalexeev on 2008-05-01 15:18:35 as
	Structure and IR spectrum of phenylalanyl-glycyl-glycine tripetide in the gas-phase: IR/UV experiments, ab initio quantum chemical calculations, and molecular dynamic simulations. [My Copy] Chemistry (Weinheim an der Bergstrasse, Germany), Vol. 11, No. 23. (18 November 2005), pp. 6803-6817. by D. Reha, H. Valdés, J. Vondrásek, et al.P. Hobza, A. Abu-Riziq, B. Crews, M. S. de Vries posted to infrared by yalexeev on 2008-04-30 12:13:53 as
	Conformational Dynamics of Trialanine in Water. 2. Comparison of AMBER, CHARMM, GROMOS, and OPLS Force Fields to NMR and Infrared Experiments [My Copy] J. Phys. Chem. B, Vol. 107, No. 21. (29 May 2003), pp. 5064-5073. by Y. G. Mu, D. S. Kosov, G. Stock posted to infrared by yalexeev on 2008-04-30 10:55:34 as along with 1 person Diego_Prada
	Molecular dynamics simulations of human &agr;-lactalbumin: Changes to the structural and dynamical properties of the protein at low pH [My Copy] Proteins: Structure, Function, and Genetics, Vol. 36, No. 1. (1999), pp. 77-86. by Lorna J. Smith, Christopher M. Dobson, Wilfred F. van Gunsteren posted to unfolding by yalexeev on 2008-04-23 14:56:44 as
	Characterization of the denaturation of human [My Copy] by Lorna J. Smith, Rachel M. Jones, Wilfred F. van Gunsteren posted to unfolding by yalexeev on 2008-04-23 14:50:11 as
	Intrinsic motions along an enzymatic reaction trajectory. [My Copy] Nature, Vol. 450, No. 7171. (6 December 2007), pp. 838-844. by Katherine A. Henzler-Wildman, Vu Thai, Ming Lei, et al.Maria Ott, Magnus Wolf-Watz, Tim Fenn, Ed Pozharski, Mark A. Wilson, Gregory A. Petsko, Martin Karplus, Christian G. Hübner, Dorothee Kern posted to karplus by yalexeev on 2008-04-23 12:24:19 as along with 12 people and 1 group saravan ahmetbakan xdeupi ubcg08l ruvido barry aqeel ebeutler cactus sobolevnrm paulschlesinger jlh64 baker-group
	Acid-Induced Unfolding Mechanism of Recombinant Human Endostatin [My Copy] Biochemistry, Vol. 43, No. 9. (9 March 2004), pp. 2550-2557. by B. Li, X. Wu, H. Zhou, Q. Chen, Y. Luo posted to unfolding by yalexeev on 2008-04-23 12:09:10 as
	Hydrogen Ion Titration Curves of beta-Lactoglobulin [My Copy] Journal of American Chemical Society, No. 81. (1959), pp. 5523-5529. by Yasuhiko Nozaki, Lyle G. Bunville, Charles Tanford posted to betalactoglobulin by yalexeev on 2008-04-22 18:15:00 as
	Two steps in the transition between the native and acid states of bovine alpha-lactalbumin detected by circular polarization of luminescence: Evidence for a premolten globule state? [My Copy] Protein Sci, Vol. 4, No. 11. (1 November 1995), pp. 2319-2326. by E. E. Gussakovsky, E. Haas posted to alpha-lactalbumin by yalexeev on 2008-04-22 16:44:45 as
	The Reversible Transformation of β-Lactoglobulin at pH 7.5 [My Copy] Journal of American Chemical Society, No. 81. (1959), pp. 4032-4036. by Charles Tanford, Lyle G. Bunville, Yasuhiko Nozaki posted to betalactoglobulin by yalexeev on 2008-04-22 15:47:14 as
	Structural Changes Accompanying pH-Induced Dissociation of the Beta-Lactoglobulin Dimer [My Copy] Biochemistry, Vol. 39, No. 13. (4 April 2000), pp. 3565-3574. by S. Uhrinova, M. H. Smith, G. B. Jameson, D. Uhrin, L. Sawyer, P. N. Barlow posted to betalactoglobulin by yalexeev on 2008-04-22 11:02:09 as
	Crystal structure of a hypoallergenic isoform of the major birch pollen allergen Bet v 1 and its likely biological function as a plant steroid carrier. [My Copy] Journal of molecular biology, Vol. 325, No. 1. (3 January 2003), pp. 123-133. by Z. Marković-Housley, M. Degano, D. Lamba, et al.E. von Roepenack-Lahaye, S. Clemens, M. Susani, F. Ferreira, O. Scheiner, H. Breiteneder posted to allergen structure by yalexeev on 2008-04-07 15:20:25 as
	Protein-protein interactions in actin-myosin binding and structural effects of R405Q mutation: A molecular dynamics study [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 64, No. 1. (2006), pp. 156-166. by Yuemin Liu, Megan Scolari, Wonpil Im, Hyung-June Woo posted to computation myosin by yalexeev on 2008-03-24 16:37:30 as
	Evolutionarily conserved networks of residues mediate allosteric communication in proteins [My Copy] Nature Structural & Molecular Biology, Vol. 10, No. 1. (16 December 2002), pp. 59-69. by Gurol M. Suel, Steve W. Lockless, Mark A. Wall, Rama Ranganathan posted to allostery by yalexeev on 2008-03-21 17:21:12 as along with 20 people and 3 groups mgomes qluo arjun_citeulike RebeccaHamer ynaito lna dimka marcius eckart_bindewald gbart analogAI nirfriedman dgront caporaso choonpeng efge carlescorbi mingzhi weisblum ca3295 biomedical-nlp BioinfoCIPF SGU-CIPF
	Structural mechanism of the recovery stroke in the Myosin molecular motor [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 19. (10 May 2005), pp. 6873-6878. by Stefan Fischer, BjÃ¶rn WindshÃ¼gel, Daniel Horak, Kenneth C. Holmes, Jeremy C. Smith posted to computation myosin by yalexeev on 2008-03-17 16:25:45 as along with 4 people and 2 groups Diego_Prada ckmyo barry shuns structural_bioinformatics Bioinformatics
	Replica exchange molecular dynamics simulations of amyloid peptide aggregation [My Copy] (17 Sep 2004) by M. Cecchini, F. Rao, M. Seeber, A. Caflisch posted to aggregation computation by yalexeev on 2008-03-12 13:51:28 as along with 1 person bobychan
	A molecular dynamics approach to the structural characterization of amyloid aggregation. [My Copy] J Mol Biol, Vol. 357, No. 4. (7 April 2006), pp. 1306-1321. by M. Cecchini, R. Curcio, M. Pappalardo, R. Melki, A. Caflisch posted to aggregation computation by yalexeev on 2008-03-12 13:48:07 as along with 2 people bobychan allmensch
	Structural Details, Pathways, and Energetics of Unfolding Apomyoglobin [My Copy] Journal of Molecular Biology, Vol. 325, No. 3. (January 2003), pp. 555-567. by A. Onufriev, D. A. Case, D. Bashford posted to computation md unfolding by yalexeev on 2008-03-03 14:43:34 as along with 1 person saravan
	The Unfolding Action of GroEL on a Protein Substrate [My Copy] Biophys. J., Vol. 87, No. 1. (1 July 2004), pp. 562-573. by Arjan van der Vaart, Jianpeng Ma, Martin Karplus posted to computation md unfolding by yalexeev on 2008-02-29 15:34:34 as
	The protein folding 'speed limit'. [My Copy] Current opinion in structural biology, Vol. 14, No. 1. (February 2004), pp. 76-88. by Jan Kubelka, James Hofrichter, William A. Eaton posted to no-tag by yalexeev on 2008-02-26 12:03:28 as along with 6 people parnell svozil dgront fjc1 choonpeng superpyrin
	Titration calculations of foot-and-mouth disease virus capsids and their stabilities as a function of pH [My Copy] Journal of Molecular Biology, Vol. 275, No. 2. (16 January 1998), pp. 295-308. by Herman W. van Vlijmen, Stephen Curry, Michael Schaefer, Martin Karplus posted to computation md ph-calculations by yalexeev on 2008-02-21 16:19:39 as
	Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. [My Copy] EMBO J, Vol. 1, No. 8. (1982), pp. 945-951. by J. E. Walker, M. Saraste, M. J. Runswick, N. J. Gay posted to binding-site myosin by yalexeev on 2008-02-20 15:19:27 as along with 1 person laurabailey
	The mechanism of the reverse recovery-step, phosphate release, and actin activation of Dictyostelium myosin II. [My Copy] J Biol Chem (21 January 2008) by Máté Gyimesi, Bálint Kintses, Andrea Bodor, et al.András Perczel, Stefan Fischer, Clive R R. Bagshaw, András Málnási-Csizmadia posted to adp kinetics myosin by yalexeev on 2008-02-19 16:34:49 as
	The Limits of Quantum Computing [My Copy] Scientific American (February 2008) by Scott Aaronson posted to no-tag by yalexeev on 2008-02-19 14:28:37 as
	pH-Dependence of Protein Stability: Absolute Electrostatic Free Energy Differences between Conformations [My Copy] J. Phys. Chem. B, Vol. 101, No. 9. (27 February 1997), pp. 1663-1683. by M. Schaefer, M. Sommer, M. Karplus posted to computation md ph-calculations by yalexeev on 2008-02-13 17:27:43 as along with 1 person dfgreen
	Improved Gō-like models demonstrate the robustness of protein folding mechanisms towards non-native interactions. [My Copy] J Mol Biol, Vol. 334, No. 2. (21 November 2003), pp. 309-325. by J. Karanicolas, C. L. Brooks posted to computation go-model md by yalexeev on 2008-02-12 16:37:53 as
	The origins of asymmetry in the folding transition states of protein L and protein G. [My Copy] Protein Sci, Vol. 11, No. 10. (October 2002), pp. 2351-2361. by J. Karanicolas, C. L. Brooks posted to computation go-model md by yalexeev on 2008-02-12 16:37:19 as along with 2 people choonpeng iantunbridge
	Atomic structure of scallop myosin subfragment S1 complexed with MgADP: a novel conformation of the myosin head. [My Copy] Cell, Vol. 97, No. 4. (14 May 1999), pp. 459-470. by A. Houdusse, V. N. Kalabokis, D. Himmel, A. G. Szent-Györgyi, C. Cohen posted to myosin x-ray by yalexeev on 2008-02-11 16:48:26 as
	X-ray structures of the myosin motor domain of Dictyostelium discoideum complexed with MgADP.BeFx and MgADP.AlF4-. [My Copy] Biochemistry, Vol. 34, No. 28. (18 July 1995), pp. 8960-8972. by A. J. Fisher, C. A. Smith, J. B. Thoden, et al.R. Smith, K. Sutoh, H. M. Holden, I. Rayment posted to myosin x-ray by yalexeev on 2008-02-11 16:41:57 as along with 1 person shuns
	The structural basis of blebbistatin inhibition and specificity for myosin II [My Copy] Nature Structural & Molecular Biology, Vol. 12, No. 4. (06 March 2005), pp. 378-379. by John S. Allingham, Robert Smith, Ivan Rayment posted to myosin x-ray by yalexeev on 2008-02-11 16:29:29 as
	Chemistry: Power play : Nature News [My Copy] Nature, No. 451. (16 January 2008), pp. 240-243. by Brendan Borrell posted to computation gpu md by yalexeev on 2008-02-11 12:51:38 as
	Prediction of peptides observable by mass spectrometry applied at the experimental set level [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 7. (2007) by William Sanders, Susan Bridges, Fiona Mccarthy, Bindu Nanduri, Shane Burgess posted to mass-spectrometry by yalexeev on 2008-02-08 15:45:31 as along with 1 person guhjy
	Improved GÅ-like Models Demonstrate the Robustness of Protein Folding Mechanisms Towards Non-native Interactions [My Copy] Journal of Molecular Biology, Vol. 334, No. 2. (21 November 2003), pp. 309-325. by John Karanicolas, Charles L. Brooks Iii posted to folding go-model by yalexeev on 2008-02-08 13:33:15 as along with 1 person flbarroso

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computation	13
myosin	12
unfolding	11
md	10
allergen	6
alpha-lactalbumin	5
infrared	4
mutants	4
betalactoglobulin	3
docking	3
go-model	3
gpu	3
protein-protein	3
x-ray	3
adp	2
aggregation	2
esmd	2
kinetics	2
ph-calculations	2
protein	2
allostery	1
binding-site	1
folding	1
haddock	1
karplus	1
ltp	1
mass-spectrometry	1
mg	1
peach	1
pepsin	1
pipeline	1
release	1
structure	1
zdock	1

yalexeev's library 109 articles Export

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