yalexeev's Karplus:M [18 articles] Export Sort

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	Molecular dynamics simulations of biomolecules. [My Copy] Nat Struct Biol, Vol. 9, No. 9. (September 2002), pp. 646-652. by M. Karplus, J. A. McCammon posted to md by yalexeev on 2008-09-04 17:02:04 as along with 8 people saravan yxue onufriev adilson_mohr baaden aqeel RamuAnandakrishnan LamBras
	Intrinsic motions along an enzymatic reaction trajectory. [My Copy] Nature, Vol. 450, No. 7171. (6 December 2007), pp. 838-844. by Katherine A. Henzler-Wildman, Vu Thai, Ming Lei, et al.Maria Ott, Magnus Wolf-Watz, Tim Fenn, Ed Pozharski, Mark A. Wilson, Gregory A. Petsko, Martin Karplus, Christian G. Hübner, Dorothee Kern posted to karplus by yalexeev on 2008-04-23 12:24:19 as along with 12 people and 1 group saravan ahmetbakan xdeupi ubcg08l ruvido barry aqeel ebeutler cactus sobolevnrm paulschlesinger jlh64 baker-group
	The Unfolding Action of GroEL on a Protein Substrate [My Copy] Biophys. J., Vol. 87, No. 1. (1 July 2004), pp. 562-573. by Arjan van der Vaart, Jianpeng Ma, Martin Karplus posted to computation md unfolding by yalexeev on 2008-02-29 15:34:34 as
	Titration calculations of foot-and-mouth disease virus capsids and their stabilities as a function of pH [My Copy] Journal of Molecular Biology, Vol. 275, No. 2. (16 January 1998), pp. 295-308. by Herman W. van Vlijmen, Stephen Curry, Michael Schaefer, Martin Karplus posted to computation md ph-calculations by yalexeev on 2008-02-21 16:19:39 as
	pH-Dependence of Protein Stability: Absolute Electrostatic Free Energy Differences between Conformations [My Copy] J. Phys. Chem. B, Vol. 101, No. 9. (27 February 1997), pp. 1663-1683. by M. Schaefer, M. Sommer, M. Karplus posted to computation md ph-calculations by yalexeev on 2008-02-13 17:27:43 as along with 1 person dfgreen
	Aspects of Protein Reaction Dynamics: Deviations from Simple Behavior [My Copy] The Journal of Physical Chemistry B, Vol. 104, No. 1. (1 January 2000), pp. 11-27. by Martin Karplus posted to kinetics by yalexeev on 2008-01-28 14:42:23 as along with 3 people proposals ruvido Diego_Prada
	Energy equipartitioning in the classical time-dependent Hartree approximation [My Copy] The Journal of Chemical Physics, Vol. 94, No. 10. (1991), pp. 6737-6739. by John E. Straub, Martin Karplus posted to esmd by yalexeev on 2008-01-09 12:15:59 as
	Allosteric Communication in Myosin: From Small Conformational Changes to Large Directed Movements [My Copy] (2007) by M. Cecchini, A. Houdusse, M. Karplus posted to no-tag by yalexeev on 2008-01-08 16:14:17 as
	The Unfolding Action of GroEL on a Protein Substrate [My Copy] Biophysical Journal, Vol. 87, No. 1. (2004), pp. 562-573. by A. van der Vaart, J. Ma, M. Karplus posted to no-tag by yalexeev on 2008-01-08 16:14:17 as
	Native and non-native interactions along protein folding and unfolding pathways [My Copy] Proteins Structure Function and Genetics, Vol. 47, No. 3. (2002), pp. 379-392. by E. Paci, M. Vendruscolo, M. Karplus posted to no-tag by yalexeev on 2008-01-08 16:14:17 as
	Effective Energy Function for Proteins in Solution [My Copy] Proteins: Structure, Function, and Genetics, Vol. 35 (1999), pp. 133-152. by T. Lazaridis, M. Karplus posted to no-tag by yalexeev on 2008-01-08 16:14:17 as
	Simulation of activation free energies in molecular systems [My Copy] The Journal of Chemical Physics, Vol. 105 (1996), pp. 1902-1921. by E. Neria, S. Fischer, M. Karplus posted to no-tag by yalexeev on 2008-01-08 16:14:17 as
	Polar hydrogen positions in proteins: empirical energy placement and neutron diffraction comparison. [My Copy] Proteins:Structure, Function and Genetics, Vol. 4, No. 2. (1988), pp. 148-56. by A. T. Brunger, M. Karplus posted to no-tag by yalexeev on 2008-01-08 16:14:17 as
	CHARMM: a program for macromolecular energy, minimization, and dynamics calculations [My Copy] Journal of computational chemistry, Vol. 4, No. 2. (1983), pp. 187-217. by B. R. Brooks, R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, M. Karplus posted to no-tag by yalexeev on 2008-01-08 16:14:16 as
	Retinoic Acid Receptor: A Simulation Analysis of Retinoic Acid Binding and the Resulting Conformational Changes [My Copy] Journal of Molecular Biology, Vol. 291, No. 1. (1999), pp. 101-115. by A. Blondel, J. P. Renaud, S. Fischer, D. Moras, M. Karplus posted to no-tag by yalexeev on 2008-01-08 16:14:16 as
	Enhanced sampling in molecular dynamics: use of the time-dependent Hartree approximation for a simulation of carbon monoxide diffusion through myoglobin [My Copy] Journal of the American Chemical Society, Vol. 112, No. 25. (1990), pp. 9161-9175. by R. Elber, M. Karplus posted to esmd by yalexeev on 2008-01-08 16:14:15 as
	A Kinetic Model of Coordinated Myosin V [My Copy] Biochemistry, Vol. 46, No. 21. (2007), pp. 6318-6330. by Y. Wu, Y. Q. Gao, M. Karplus posted to no-tag by yalexeev on 2008-01-08 16:14:13 as
	Biomolecular motors: the F1-ATPase paradigm [My Copy] Current Opinion in Structural Biology, Vol. 14, No. 2. (2004), pp. 250-259. by M. Karplus, Y. Q. Gao posted to no-tag by yalexeev on 2008-01-08 16:14:12 as

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