Representing, storing and accessing molecular interaction data: a review of models and tools. Export

@article{citeulike:1314320, abstract = {One important aim within systems biology is to integrate disparate pieces of information, leading to discovery of higher-level knowledge about important functionality within living organisms. This makes standards for representation of data and technology for exchange and integration of data important key points for development within the area. In this article, we focus on the recent developments within the field. We compare the recent updates to the three standard representations for exchange of data SBML, PSI MI and BioPAX. In addition, we give an overview of available tools for these three standards and a discussion on how these developments support possibilities for data exchange and integration.}, address = {Department of Computer and Information Science, Link\"{o}pings Universitet, Sweden. lestr@ida.liu.se}, author = {Str\"{o}mb\"{a}ck, L. and Jakoniene, V. and Tan, H. and Lambrix, P.}, citeulike-article-id = {1314320}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bib/bbl039}, citeulike-linkout-1 = {http://view.ncbi.nlm.nih.gov/pubmed/17132622}, citeulike-linkout-2 = {http://www.hubmed.org/display.cgi?uids=17132622}, doi = {10.1093/bib/bbl039}, issn = {1467-5463}, journal = {Briefings in bioinformatics}, keywords = {ontology}, month = {December}, number = {4}, pages = {331--338}, posted-at = {2007-11-04 08:20:30}, priority = {2}, title = {Representing, storing and accessing molecular interaction data: a review of models and tools.}, url = {http://dx.doi.org/10.1093/bib/bbl039}, volume = {7}, year = {2006} }

TY - JOUR ID - citeulike:1314320 L3 - citeulike-article-id:1314320 N2 - One important aim within systems biology is to integrate disparate pieces of information, leading to discovery of higher-level knowledge about important functionality within living organisms. This makes standards for representation of data and technology for exchange and integration of data important key points for development within the area. In this article, we focus on the recent developments within the field. We compare the recent updates to the three standard representations for exchange of data SBML, PSI MI and BioPAX. In addition, we give an overview of available tools for these three standards and a discussion on how these developments support possibilities for data exchange and integration. IS - 4 JF - Briefings in bioinformatics SN - 1467-5463 AD - Department of Computer and Information Science, Linköpings Universitet, Sweden. lestr@ida.liu.se EP - 338 TI - Representing, storing and accessing molecular interaction data: a review of models and tools. VL - 7 SP - 331 KW - ontology AU - Strömbäck, L AU - Jakoniene, V AU - Tan, H AU - Lambrix, P PY - 2006/12// UR - http://dx.doi.org/10.1093/bib/bbl039 ER -