yas's library 480 articles Export

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	Mining Semantic Descriptions of Bioinformatics Web Resources from the Literature [My Copy] The Semantic Web: Research and Applications (2009), pp. 535-549. by Hammad Afzal, Robert Stevens, Goran Nenadic posted to software semantic-web by yas on 2009-11-09 12:17:37 as
	Bio-jETI: a framework for semantics-based service composition. [My Copy] BMC bioinformatics, Vol. 10 Suppl 10, No. Suppl 10. (2009), S8. by Anna-Lena L. Lamprecht, Tiziana Margaria, Bernhard Steffen posted to software semantic_web by yas on 2009-11-09 11:56:18 as along with 2 people ralf_nagel druvus
	Cancer: Three birds with one stone [My Copy] Nature, Vol. 460, No. 7254. (22 July 2009), pp. 466-467. by Franck Toledo, Boris Bardot posted to p53 cancer biomedical by yas on 2009-10-27 03:21:44 as along with 1 person and 1 group mkiyer Chinnaiyan Lab
	Information overload [My Copy] Nature, Vol. 460, No. 7255. (29 July 2009), pp. 551-551. posted to database by yas on 2009-10-27 01:32:43 as along with 2 people rdiaz dswan
	GeneE: Gene and protein query expansion with disambiguation. [My Copy] Bioinformatics (Oxford, England) (16 October 2009) by Martijn J. Schuemie, Ning Kang, Maarten L. Hekkelman, Jan A. Kors posted to information-retrieval by yas on 2009-10-21 04:16:23 as
	SENT: semantic features in text. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), gkp392. by Miguel Vazquez, Pedro Carmona-Saez, Ruben Nogales-Cadenas, et al.Monica Chagoyen, Francisco Tirado, Jose Maria M. Carazo, Alberto Pascual-Montano posted to unsupervised-learning nlp literature-based-annotation data-interpretation by yas on 2009-10-13 06:15:21 as along with 2 people guhjy nuin
	eggNOG: automated construction and annotation of orthologous groups of genes. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (16 January 2008), gkm796. by Lars Juhl J. Jensen, Philippe Julien, Michael Kuhn, et al.Christian von Mering, Jean Muller, Tobias Doerks, Peer Bork posted to genome bioinformatics by yas on 2009-08-24 02:49:11 as along with 8 people sjcockell johanviklund guhjy jmeppley maximilianh Thaverkamp hplatero larsjuhljensen
	Evolution of transcription factors and the gene regulatory network in Escherichia coli. [My Copy] Nucleic Acids Res, Vol. 31, No. 4. (15 February 2003), pp. 1234-1244. by M. Madan Babu, S. A. Teichmann posted to biomedical tfbs by yas on 2009-04-30 11:12:23 as along with 5 people wangbo LeightonP hununu kaarsinogen discreteonyxorb
	Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge [My Copy] Genome Biology, Vol. 9, No. Suppl 2. (2008) by Martin Krallinger, Alexander Morgan, Larry Smith, et al.Florian Leitner, Lorraine Tanabe, John Wilbur, Lynette Hirschman, Alfonso Valencia posted to text-mining by yas on 2009-04-18 09:53:41 as along with 3 people satre bouncingbudha yggdrasil
	BioCaster: detecting public health rumors with a Web-based text mining system [My Copy] Bioinformatics (15 October 2008), btn534. by Nigel Collier, Son Doan, Ai Kawazoe, et al.Reiko M. Goodwin, Mike Conway, Yoshio Tateno, Quoc-Hung Ngo, Dinh Dien, Asanee Kawtrakul, Koichi Takeuchi, Mika Shigematsu, Kiyosu Taniguchi posted to software text-mining by yas on 2009-03-12 02:46:47 as along with 6 people and 1 group Effie ianturton neils rschulz sondoan Gaetan NaCTeM
	TFBS: Computational framework for transcription factor binding site analysis [My Copy] Bioinformatics, Vol. 18, No. 8. (1 August 2002), pp. 1135-1136. by Boris Lenhard, Wyeth W. Wasserman posted to software tfbs by yas on 2009-03-07 01:27:19 as along with 5 people and 1 group tharris antonkratz ilyashl chad_davis oannes C. elegans / WormBase
	Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000204. by Duncan Hull, Steve R. Pettifer, Douglas B. Kell posted to database by yas on 2009-03-06 07:56:35 as along with 191 people and 17 groups radagabriel mfenner jalonsoarevalo StemCellWorkstation martica840527 agbiotec LinaMelo claudine acabezas aaltenburger sarelfa Anita13 Dannycoutinho tmar lucybuykx ltitodem dcombe christianholz schoeband dgovoni maren antonkratz mzkbnt girabbit mawds tlb56 sstose klexa n00c slr52 jandot applebyb timhubbard yangjustinc CameronNeylon heliopais sarabatts aldra Prlwrlczkwsky CPAP amyfyn vellino ulrichs malkav30 cristiangutierrez rockrescue victorantoniomtz Tita NancyAbigail Nembrod jclau clarabermudez tanyacovi6 jmohan polivares artaban421 nperoni eudominguezmartin nhoussos MARCOUNAM carelcad euanlawson furlong stevepettifer flipip23 virolog ZoeThomas pawelsobko tnhh kbkbk8 rickl nellapower mcentyre wujastyk beanformer msanchof2009 dmaweb bhengeveld jpgrolle wsumthai daforerog INK-SSCI-SCI quianominorleo tux2000 cogs AJCann robsyme anthrogeek lmichan sainsworth hkimura western4uk cybob10 kevinemamy akriesch williamgunn carlblesius Effie alhoori mikel_egana tilanka coldmeadow Tomste mseyfang fitzgeraldp2 fungal eduardod5 DavidG67 chenlc03 stempvoort lesikv jmueller17 sirexkat Koh akraemer thegoose kharke niallhaslam rdmagnuson JuanGiarrizzo pkonings jennialp lgibson rmasur GJNauta puchu rrbarb amarois mneeley dr_lee_xray IRTADOC zilvlan curthh mount_misery narroyo rdiaz treangen hpaces bumatic BerndBerndsen esterhasz phreeza dbk rempeljl teachingaging cs02 joseph_x_zhou continea Rosetta fletchad Betelgeuse60 tomroper 1971biblio timrwatkins rschulz cisevol ryan smithrise silberbauer natstreet pick600 xjlibod ukppdadsr robertlischke bookwormzz NIlz junwang4 taguchi tag barry kristgy caseybrown Gaetan bcondon lynnefox marekrud nuin sdgsilvana ckai1 guhjy neils norris jago druvus emayorga GeeSharpMinor fgibson chad_davis Zephyrus leonardo dullhunk Zotero en español Journal picks Health_Informatics Herramientas20 Semantic-Social-Networks INK-SSCI-SCI@CiteuLike.org eLearning in Leicester mgh-lcs NaCTeM MEHTRadiology Département Hypermédia - Master NET JLab BergmanLab McCammon Poverty Alleviation from Access to Knowledge structural_bioinformatics Roswell Cancer Crosstalk
	Text mining: powering the database revolution [My Copy] Nature, Vol. 448, No. 7150. (11 July 2007), pp. 130-130. by Udo Hahn, Joachim Wermter, Rainer Blasczyk, Peter A. Horn posted to database text-mining by yas on 2009-02-19 08:29:06 as along with 6 people martingerner guhjy dullhunk hpiwowar ianturton mircea
	PNAD-CSS: a workbench for constructing a protein name abbreviation dictionary. [My Copy] Bioinformatics (Oxford, England), Vol. 16, No. 2. (February 2000), pp. 169-175. by M. Yoshida, K. Fukuda, T. Takagi posted to abbreviation-resolution by yas on 2009-01-22 07:05:29 as
	Acronyms, abbreviations and initialisms. [My Copy] BJU international, Vol. 86, No. 1. (July 2000), pp. 1-6. by D. A. Bloom posted to abbreviation-resolution by yas on 2009-01-22 06:52:56 as
	A study of abbreviations in the UMLS. [My Copy] Proceedings / AMIA ... Annual Symposium. AMIA Symposium (2001), pp. 393-397. by H. Liu, Y. A. Lussier, C. Friedman posted to abbreviation-resolution by yas on 2009-01-22 05:29:08 as
	A study of abbreviations in MEDLINE abstracts. [My Copy] Proc AMIA Symp (2002), pp. 464-468. by H. Liu, A. R. Aronson, C. Friedman posted to abbreviation-resolution by yas on 2009-01-22 05:26:03 as along with 2 people and 1 group martingerner irenas dbk-lab
	A simple algorithm for identifying abbreviation definitions in biomedical text. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2003), pp. 451-462. by A. S. Schwartz, M. A. Hearst posted to abbreviation-resolution by yas on 2009-01-22 05:19:04 as along with 2 people and 1 group martingerner Effie NaCTeM
	MBA: a literature mining system for extracting biomedical abbreviations [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009) by Yun Xu, Zhihao Wang, Yiming Lei, Yuzhong Zhao, Yu Xue posted to abbreviation-resolution by yas on 2009-01-22 05:08:48 as along with 5 people and 1 group Effie Gaetan guhjy zimbo1 mitko NaCTeM
	Abbreviation Definition Identification Based On Automatic Precision Estimates [My Copy] BMC Bioinformatics, Vol. 9 (25 September 2008), 402. by Sunghwan Sohn, Donald C. Comeau, Won Kim, John W. Wilbur posted to abbreviation-resolution by yas on 2009-01-22 05:07:52 as
	Creating an online dictionary of abbreviations from MEDLINE. [My Copy] J Am Med Inform Assoc, Vol. 9, No. 6. (c 2002), pp. 612-620. by J. T. Chang, H. Schütze, R. B. Altman posted to abbreviation-resolution by yas on 2009-01-22 05:07:19 as along with 4 people and 3 groups Effie irenas natsu helliontroy NaCTeM dbk-lab biomedical-nlp
	Semi-supervised Maximum Entropy based approach to acronym and abbreviation normalization in medical texts [My Copy] In ACL '02: Proceedings of the 40th Annual Meeting on Association for Computational Linguistics (2001), pp. 160-167. by Serguei Pakhomov posted to abbreviation-resolution by yas on 2009-01-20 13:28:51 as
	Disambiguating Ambiguous Biomedical Terms in Biomedical Narrative Text: An Unsupervised Method [My Copy] Journal of Biomedical Informatics, Vol. 34, No. 4. (August 2001), pp. 249-261. by Hongfang Liu, Yves A. Lussier, Carol Friedman posted to abbreviation-resolution by yas on 2009-01-20 13:25:28 as along with 2 people and 1 group Effie akastrin NaCTeM
	Automatic extraction of acronym-meaning pairs from MEDLINE databases. [My Copy] Medinfo, Vol. 10, No. Pt 1. (2001), pp. 371-375. by J. Pustejovsky, J. Castaño, B. Cochran, M. Kotecki, M. Morrell posted to abbreviation-resolution by yas on 2009-01-20 13:07:24 as along with 2 people natsu yggdrasil
	A document clustering and ranking system for exploring MEDLINE citations. [My Copy] Journal of the American Medical Informatics Association : JAMIA, Vol. 14, No. 5. (1 September 2007), pp. 651-661. by Yongjing Lin, Wenyuan Li, Keke Chen, Ying Liu posted to clustering by yas on 2009-01-20 09:53:10 as along with 8 people surendra76 artaban421 lmichan fordparsons ianturton Gaetan aheilbut hpiwowar
	BioABACUS: a database of abbreviations and acronyms in biotechnology and computer science. [My Copy] Bioinformatics (Oxford, England), Vol. 14, No. 10. (1998), pp. 888-889. by M. Rimer, M. O'Connell posted to abbreviation-resolution by yas on 2009-01-20 09:47:24 as
	SaRAD: a Simple and Robust Abbreviation Dictionary. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 4. (1 March 2004), pp. 527-533. by E. Adar posted to abbreviation-resolution by yas on 2009-01-20 09:45:05 as along with 1 person and 1 group Effie NaCTeM
	Building an abbreviation dictionary using a term recognition approach. [My Copy] Bioinformatics (18 October 2006) by Naoaki Okazaki, Sophia Ananiadou posted to abbreviation-resolution by yas on 2009-01-20 09:43:16 as along with 2 people and 1 group Effie gaudan NaCTeM
	Heuristics for identification of acronym-definition patterns within text: towards an automated construction of comprehensive acronym-definition dictionaries. [My Copy] Methods of information in medicine, Vol. 41, No. 5. (2002), pp. 426-434. by J. D. Wren, H. R. Garner posted to abbreviation-resolution by yas on 2009-01-20 09:40:37 as
	ADAM: another database of abbreviations in MEDLINE [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2813-2818. by Wei Zhou, Vetle I. Torvik, Neil R. Smalheiser posted to abbreviation-resolution by yas on 2009-01-20 09:39:04 as along with 2 people artaban421 Enro
	Mapping abbreviations to full forms in biomedical articles. [My Copy] Journal of the American Medical Informatics Association : JAMIA, Vol. 9, No. 3. (n 2002), pp. 262-272. by H. Yu, G. Hripcsak, C. Friedman posted to abbreviation-resolution by yas on 2009-01-20 09:34:55 as
	The effect of abbreviations on MEDLINE searching. [My Copy] Academic emergency medicine : official journal of the Society for Academic Emergency Medicine, Vol. 6, No. 4. (April 1999), pp. 292-296. by C. S. Federiuk posted to abbreviation-resolution text-mining by yas on 2009-01-20 07:02:32 as
	Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users [My Copy] Bioinformatics, Vol. 24, No. 18. (15 September 2008), pp. 2086-2093. by Hagit Shatkay, Fengxia Pan, Andrey Rzhetsky, W. John Wilbur posted to text-classification text-mining by yas on 2008-12-02 08:22:41 as along with 5 people operon Effie robert85 mitko guhjy
	Applied bioinformatics for the identification of regulatory elements. [My Copy] Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 276-287. by W. W. Wasserman, A. Sandelin posted to bioinformatics genome tfbs by yas on 2008-11-20 09:51:10 as along with 18 people and 8 groups wowalz icases ana chad_davis moborg gpalidwor dchughes nickluscombe johncumbers giovanni xiaobeizhao bertelsen Stew nklee jdiezperezj ArtemPankin mariakmejia isimpson structural_bioinformatics Bioinformatics EisenLab G4ID EBI-regulation GeschwindLab TNT Genetics-of-Gambling
	A new method to measure the semantic similarity of GO terms [My Copy] Bioinformatics, Vol. 23, No. 10. (15 May 2007), pp. 1274-1281. by James Z. Wang, Zhidian Du, Rapeeporn Payattakool, Philip S. Yu, Chin-Fu Chen posted to go semantic-similarity by yas on 2008-10-14 14:31:38 as along with 14 people anthropomorphism mlangill roys MarcoAlvarez paszkows guhjy jfr grahamc iris_2001 macavity1g florianleitner zwang sgoetz mz2
	Exploiting and integrating rich features for biological literature classification. [My Copy] BMC bioinformatics, Vol. 9 Suppl 3 (2008) by H. Wang, M. Huang, S. Ding, X. Zhu posted to text-classification by yas on 2008-10-14 14:30:36 as along with 4 people and 1 group Effie mariakmejia maralena guhjy NaCTeM
	Learning to extract relations for protein annotation. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007) by J. H. Kim, A. Mitchell, T. K. Attwood, M. Hilario posted to annotation information-extraction by yas on 2008-10-14 14:29:54 as along with 3 people and 2 groups eesruiz Effie robert85 ImagCom - Biomedical Text Computing NaCTeM
	Gene Ontology annotation quality analysis in model eukaryotes. [My Copy] Nucleic Acids Res (10 January 2008) by Teresia J J. Buza, Fiona M M. McCarthy, Nan Wang, Susan M M. Bridges, Shane C C. Burgess posted to annotation go by yas on 2008-10-14 14:29:18 as along with 3 people guhjy kluck carlk
	Normalizing biomedical terms by minimizing ambiguity and variability [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 3. (2008) by Yoshimasa Tsuruoka, John Mcnaught, Sophia Ananiadou posted to term-normalization by yas on 2008-10-14 14:27:17 as along with 7 people and 2 groups Effie schwartzjmc cisevol dullhunk vlachmore satre guhjy NaCTeM BergmanLab
	Metrics for GO based protein semantic similarity: a systematic evaluation. [My Copy] BMC bioinformatics, Vol. 9 Suppl 5 (2008) by C. Pesquita, D. Faria, H. Bastos, A. E. Ferreira, A. O. Falcão, F. M. Couto posted to go wsd by yas on 2008-10-14 14:25:39 as along with 5 people Keywan sgoetz MarcoAlvarez mariakmejia guhjy
	Building a protein name dictionary from full text: a machine learning term extraction approach. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (7 April 2005) by L. Shi, F. Campagne posted to dictionary-building by yas on 2008-10-14 14:22:21 as along with 4 people and 2 groups irenas bundschu bhaddow gaudan dbk-lab generif_paper
	Using MEDLINE as a knowledge source for disambiguating abbreviations and acronyms in full-text biomedical journal articles. [My Copy] J Biomed Inform (7 June 2006) by Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W John J. Wilbur posted to abbreviation-resolution by yas on 2008-10-14 13:22:08 as along with 3 people and 2 groups Effie helliontroy Gaetan NaCTeM biomedical-nlp
	New challenges for text mining: mapping between text and manually curated pathways. [My Copy] BMC bioinformatics, Vol. 9 Suppl 3 (2008) by K. Oda, J. D. Kim, T. Ohta, et al.D. Okanohara, T. Matsuzaki, Y. Tateisi, J. Tsujii posted to text-mining by yas on 2008-10-14 13:13:51 as along with 5 people and 1 group Effie guhjy mariakmejia maralena satre NaCTeM
	Information theory applied to the sparse gene ontology annotation network to predict novel gene function [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i529-538. by Ying Tao, Lee Sam, Jianrong Li, Carol Friedman, Yves A. Lussier posted to go information-theory by yas on 2008-10-14 13:08:23 as along with 3 people MarcoAlvarez ndiaz guhjy
	Extraction of semantic biomedical relations from text using conditional random fields [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 207. by Markus Bundschus, Mathaeus Dejori, Martin Stetter, Volker Tresp, Hans P. Kriegel posted to information-extraction ner by yas on 2008-10-14 12:09:21 as along with 9 people and 2 groups artaban421 Scis0000002 Effie svozil ogenex guhjy bundschu naegele TheresaNiederberger NaCTeM Bioinformatics
	Rule-based human gene normalization in biomedical text with confidence estimation. [My Copy] Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference, Vol. 6 (2007), pp. 371-379. by W. W. Lau, C. A. Johnson, K. G. Becker posted to ner term-normalization by yas on 2008-10-14 11:24:56 as
	BibGlimpse: The case for a light-weight reprint manager in distributed literature research [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Thomas Tuechler, Golda Velez, Alexandra Graf, David Kreil posted to annotation information-retrieval by yas on 2008-10-06 04:49:00 as along with 9 people and 2 groups Effie druvus cisevol guhjy nuin zimbo1 hpiwowar barriot dullhunk NaCTeM BergmanLab
	Markov model recognition and classification of DNA/protein sequences within large text databases [My Copy] Bioinformatics, Vol. 21, No. 21. (1 November 2005), pp. 4046-4053. by Jonathan D. Wren, William H. Hildebrand, Sreedevi Chandrasekaran, Ulrich Melcher posted to genome text-mining by yas on 2008-09-29 10:49:40 as along with 3 people and 2 groups cisevol sergut soramame_0518 BergmanLab MiGen Project
	Text-mining assisted regulatory annotation [My Copy] Genome Biology, Vol. 9, No. 2. (2008) by Stein Aerts, Maximilian Haeussler, Steven van Vooren, et al.Obi Griffith, Paco Hulpiau, Steven Jones, Stephen Montgomery, Casey Bergman, The posted to annotation text-mining by yas on 2008-09-18 14:24:21 as along with 13 people and 2 groups artaban421 henk-cul daforerog daveGerrard cisevol dullhunk maximilianh idonaldson mircea jsjoly isimpson bpcusack guhjy dbmi-nlp BergmanLab
	Integration of relational and hierarchical network information for protein function prediction [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, Eric Kolaczyk posted to go network-analysis by yas on 2008-09-11 04:35:32 as along with 6 people cgaugain mitko grahamc tmmurali barriot dansullivanblk

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information-extraction	82
text-mining	76
nlp	45
review	40
clustering	39
information-retrieval	38
literature-based-discovery	24
abbreviation-resolution	22
ner	20
database	18
software	18
ontology	16
biomedical	13
network-analysis	11
go	9
microarray	9
online-resource	9
comments	7
protein-protein-interactions	7
semantic-web	7
summarization	7
systems-biology	7
text-classification	7
visualization	7
protein-function	6
annotation	5
applied-mathematics	5
classification	5
genome	5
knowledge-sharing	5
web-service	5
wsd	5
algorithm	4
bioinformatics	4
citation-context	4
gene-expression	4
tagging-or-annotation	4
protein-function-prediction	3
question-answering	3
statistics	3
tfbs	3
bio-lit-integration	2
corpus	2
data-interpretation	2
data-representation	2
gene-protein-name	2
human	2
information-theory	2
literature-based-annotation	2
machine-learning	2
paraphrase	2
pos-tagger	2
rhetorical-zone	2
svd	2
term-normalization	2
unsupervised-learning	2
whole-genome	2
aggregation	1
architecture	1
cancer	1
context-based	1
credibility	1
dictionary-building	1
emp	1
genotype-phenotype	1
ica	1
media	1
metagenome	1
open-access	1
p53	1
phylogenetic	1
semantic-similarity	1
semantic_web	1
taxonomy	1
tutorial	1
wiki	1

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