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yas's review [40 articles]

Recent papers added to yas's library classified by the tag review. You can also see everyone's review.
  • Seeking a New Biology through Text Mining
    Cell, Vol. 134, No. 1. (11 July 2008), pp. 9-13.
    by Andrey Rzhetsky, Michael Seringhaus, Mark Gerstein
    posted to text-mining review by yas on 2008-07-26 03:32:41 as ** along with 7 people fgibson tharris dullhunk icq242500260 jyuh bootsy pzoot
  • A critical review of PASBio's argument structures for biomedical verbs
    BMC Bioinformatics, Vol. 7, No. Suppl 3. (2006)
    by Bretonnel K Cohen, Lawrence Hunter
    posted to review nlp by yas on 2008-06-26 03:44:34 as ** along with 1 person satre
  • Gene-set approach for expression pattern analysis
    Brief Bioinform (17 January 2008), bbn001.
    by Dougu Nam, Seon-Young Kim
    posted to review go gene-expression by yas on 2008-06-24 03:45:54 as ** along with 9 people klo beete tmmurali AlexanderPico heliopais giovenko lp2 seemu thomaskelder
  • Getting Started in Text Mining
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e20.
    by Bretonnel K Cohen, Lawrence Hunter
    posted to review text-mining by yas on 2008-02-01 11:43:33 as ** along with 13 people and 1 group jfr quianominorleo TheresaNiederberger ulmer jyuh y4su0 dullhunk hpiwowar sebastien_vigneau shigepong cjeans wchapman sci91078 dbmi-nlp
  • [Computational analyses of biomedical literature for understanding living organisms]
    Tanpakushitsu Kakusan Koso, Vol. 50, No. 16 Suppl. (December 2005), pp. 2244-2249.
    by Y Yamamoto, T Takagi
    posted to review text-mining by yas on 2007-11-05 06:14:51 as **
  • Question Answering in Restricted Domains: An Overview
    Computational Linguistics, Vol. 33, No. 1. (March 2007), pp. 41-61.
    by Diego Mollá, José L Vicedo
    edited by Robert Dale
    posted to nlp question-answering review by yas on 2007-05-21 08:56:33 as ** along with 1 group T_lab
  • Bioinformatics: bringing it all together.
    Nature, Vol. 419, No. 6908. (17 October 2002)
    by M Chicurel
    posted to bioinformatics review by yas on 2007-03-02 04:46:36 as ** along with 1 person and 1 group moborg T_lab
  • Current bioinformatics tools in genomic biomedical research (Review).
    Int J Mol Med, Vol. 17, No. 6. (June 2006), pp. 967-973.
    by A Teufel, M Krupp, A Weinmann, PR Galle
    posted to online-resource review by yas on 2007-02-17 09:35:01 as ** along with 1 group T_lab
  • Role of Technical Literature in Science and Technology Development and Exploitation
    Journal of Information Science, Vol. 29, No. 3. (1 June 2003), pp. 223-228.
    by Ronald N Kostoff
    posted to information-extraction review by yas on 2007-02-17 08:04:49 as ** along with 1 group T_lab
  • The extraction of useful information from the biomedical literature.
    Acad Med, Vol. 76, No. 12. (December 2001), pp. 1265-1270.
    by R Kostoff
    posted to information-extraction review by yas on 2007-02-17 08:01:31 as ** along with 1 group T_lab
  • How Will Big Pictures Emerge From a Sea of Biological Data?
    Science, Vol. 309, No. 5731. (01 July 2005), 94.
    by Elizabeth Pennisi
    posted to review by yas on 2007-02-15 06:40:27 as ** along with 3 people and 1 group stringertheory imouthesmp eweaver T_lab
  • Mining literature for systems biology.
    Brief Bioinform (10 October 2006)
    by Phoebe M M Roberts
    posted to review systems-biology text-mining by yas on 2006-10-20 04:52:34 as ** along with 2 people and 2 groups irenas jacky957 dbk-lab T_lab
  • Open source tools and toolkits for bioinformatics: significance, and where are we?
    Brief Bioinform, Vol. 7, No. 3. (September 2006), pp. 287-296.
    by JE Stajich, H Lapp
    posted to review software by yas on 2006-10-20 04:47:49 as ** along with 7 people and 2 groups Ayest eweaver indigoviolet moborg dgront stajich george_g EisenLab T_lab
  • Bio-ontologies: current trends and future directions.
    Brief Bioinform, Vol. 7, No. 3. (September 2006), pp. 256-274.
    by O Bodenreider, R Stevens
    posted to ontology review by yas on 2006-10-20 04:43:58 as ** along with 7 people and 1 group dansullivanblk alanrw dullhunk ebrahim_bagheri aconesa sgoetz BIBLIOma T_lab
  • Automated protein function prediction--the genomic challenge.
    Brief Bioinform (23 May 2006)
    by Iddo Friedberg
    posted to protein-function-prediction review by yas on 2006-10-20 04:42:30 as ** along with 6 people and 3 groups tjimenez marcius j3xucite cdallett sgoetz bootsy T_lab BioinfoCIPF SGU-CIPF
  • Text mining and its potential applications in systems biology.
    Trends Biotechnol (11 October 2006)
    by Sophia Ananiadou, Douglas B B Kell, Jun-Ichi I Tsujii
    posted to review text-mining by yas on 2006-10-20 04:39:09 as ** along with 12 people and 2 groups satre alanrw TheresaNiederberger irenas jfr dullhunk fisherp jacky957 daniel_schober dejori pablomendes pmendes dbk-lab T_lab
  • Machine learning in bioinformatics.
    Brief Bioinform, Vol. 7, No. 1. (March 2006), pp. 86-112.
    by P Larrañaga, B Calvo, R Santana, C Bielza, J Galdiano, I Inza, JA Lozano, R Armañanzas, G Santafé, A Pérez, V Robles
    posted to machine-learning review by yas on 2006-06-11 07:18:31 as ** along with 5 people and 2 groups jfr caporaso rsantana dimatura xili03 T_lab biomedical-nlp
  • Biomedical Language Processing: What's Beyond PubMed?
    Mol Cell, Vol. 21, No. 5. (3 March 2006), pp. 589-594.
    by L Hunter, KB Cohen
    posted to nlp review by yas on 2006-03-14 04:37:23 as read along with 7 people and 3 groups satre TheresaNiederberger irenas andytseng hpiwowar caporaso jacky957 dbk-lab T_lab biomedical-nlp
  • An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by EB Camon, DG Barrell, EC Dimmer, V Lee, M Magrane, J Maslen, D Binns, R Apweiler
    posted to information-extraction review by yas on 2006-02-24 12:43:23 as ** along with 4 people and 2 groups yggdrasil helliontroy CitoJam adoms T_lab biomedical-nlp
  • Information problems in molecular biology and bioinformatics
    Journal of the American Society for Information Science and Technology, Vol. 55, No. 5. (19 January 2005), pp. 447-456.
    by John W Macmullen, Sheila O Denn
    posted to review by yas on 2006-01-26 13:48:46 as ** along with 1 group T_lab
  • notes Literature mining for the biologist: from information retrieval to biological discovery
    Nature Reviews Genetics, Vol. 7, No. 2., pp. 119-129.
    by Lars J Jensen, Jasmin Saric, Peer Bork
    posted to information-extraction review text-mining by yas on 2006-01-23 07:54:54 as ** along with 25 people and 3 groups satre ibuch akastrin skumagai TheresaNiederberger Enro jyuh kuhn dullhunk hpiwowar dgront caporaso zlu jacky957 lynnefox jdiggans cjeans ghattem michaelmampaey dejori jandot mircea farzanehs larsjuhljensen adoms T_lab biomedical-nlp ADMiRes
  • Extracting information automatically from biological literature
    Comparative and Functional Genomics, Vol. 2, No. 5. (October 2001), pp. 310-313.
    by C Blaschke, R Hoffmann, Carlos, Valencia
    posted to information-extraction review by yas on 2006-01-15 17:26:33 as ** along with 1 group T_lab
  • The use of receiver operating characteristic curves in biomedical informatics
    Journal of Biomedical Informatics, Vol. 38, No. 5. (October 2005), pp. 404-415.
    by Thomas A Lasko, Jui G Bhagwat, Kelly H Zou, Lucila Ohno-Machado
    posted to review by yas on 2006-01-14 16:09:14 as ** along with 3 people and 1 group AbnerCYH microserf vmoa T_lab
  • Information extraction in molecular biology.
    Brief Bioinform, Vol. 3, No. 2. (June 2002), pp. 154-165.
    by C Blaschke, L Hirschman, A Valencia
    posted to information-extraction review by yas on 2006-01-11 16:05:01 as ** along with 4 people and 3 groups irenas Enro kuhn helliontroy dbk-lab T_lab biomedical-nlp
  • Facts from text-is text mining ready to deliver?
    PLoS Biol, Vol. 3, No. 2. (February 2005)
    by D Rebholz-Schuhmann, H Kirsch, F Couto
    posted to review text-mining by yas on 2006-01-11 16:02:48 as ** along with 13 people and 3 groups hpiwowar jfr snuppepuppan irenas dullhunk t11 onca dgront caporaso shimah78us daniel_schober dejori adoms dbk-lab T_lab biomedical-nlp
  • Mining the biomedical literature in the genomic era: an overview.
    J Comput Biol, Vol. 10, No. 6. (2003), pp. 821-855.
    by H Shatkay, R Feldman
    posted to review text-mining by yas on 2006-01-11 16:00:25 as ** along with 7 people and 2 groups aheilbut irenas Enro miguel benny balex adoms dbk-lab T_lab
  • Accomplishments and challenges in literature data mining for biology.
    Bioinformatics, Vol. 18, No. 12. (December 2002), pp. 1553-1561.
    by L Hirschman, JC Park, J Tsujii, L Wong, CH Wu
    posted to review text-mining by yas on 2006-01-11 15:59:37 as ** along with 7 people and 6 groups satre irenas Enro benny kehan caporaso vlachmore dbk-lab biodiversity_conservation Bioinformatics T_lab biomedical-nlp GrassBase
  • What makes a gene name? Named entity recognition in the biomedical literature
    Briefings in Bioinformatics, Vol. 6, No. 4. (December 2005), pp. 357-369.
    by Leser, Ulf, Hakenberg, Jorg
    posted to ner review by yas on 2006-01-09 04:41:02 as ** along with 1 group T_lab
  • Evaluation of biomedical text-mining systems: Lessons learned from information retrieval
    Briefings in Bioinformatics, Vol. 6, No. 4. (December 2005), pp. 344-356.
    by Hersh, William
    posted to review text-mining by yas on 2006-01-09 04:38:24 as ** along with 1 group T_lab
  • Do you do text?
    Bioinformatics (29 September 2005)
    by Christian Blaschke, Alexander Yeh, Evelyn Camon, Marc Colosimo, Rolf Apweiler, Lynette Hirschman, Alfonso Valencia
    posted to review text-mining by yas on 2005-11-29 03:49:00 as ** along with 2 people and 3 groups marcius maryee T_lab BioinfoCIPF SGU-CIPF
  • Recent advances in natural language processing for biomedical applications.
    Int J Med Inform (30 August 2005)
    by Nigel Collier, Adeline Nazarenko, Robert Baud, Patrick Ruch
    posted to nlp review by yas on 2005-11-28 15:11:42 as ** along with 2 people and 1 group satre libah T_lab
  • The next generation of literature analysis: integration of genomic analysis into text mining.
    Brief Bioinform, Vol. 6, No. 3. (September 2005), pp. 287-297.
    by M Scherf, A Epple, T Werner
    posted to review text-mining by yas on 2005-11-23 13:26:37 as ** along with 4 people and 3 groups irenas hpiwowar mroos loopback007 dbk-lab T_lab AID
  • Online tools to support literature-based discovery in the life sciences.
    Brief Bioinform, Vol. 6, No. 3. (September 2005), pp. 277-286.
    by M Weeber, JA Kors, B Mons
    posted to literature-based-discovery review text-mining by yas on 2005-11-23 13:25:34 as ** along with 4 people and 1 group Enro jyuh fisherp Barend T_lab
  • Extraction of biological interaction networks from scientific literature.
    Brief Bioinform, Vol. 6, No. 3. (September 2005), pp. 263-276.
    by A Skusa, A Rüegg, J Köhler
    posted to information-extraction review by yas on 2005-11-23 13:24:09 as ** along with 1 person and 1 group natsu T_lab
  • Information retrieval and knowledge discovery utilising a biomedical Semantic Web.
    Brief Bioinform, Vol. 6, No. 3. (September 2005), pp. 252-262.
    by S Mukherjea
    posted to information-retrieval review semantic-web by yas on 2005-11-23 13:22:45 as ** along with 4 people and 4 groups jyuh wcrosbie dullhunk benfqt Wikipedia CoP_CMS T_lab Evidence-based-medicine
  • Text mining and ontologies in biomedicine: making sense of raw text.
    Brief Bioinform, Vol. 6, No. 3. (September 2005), pp. 239-251.
    by I Spasic, S Ananiadou, J McNaught, A Kumar
    posted to ontology review text-mining by yas on 2005-11-23 13:21:19 as ** along with 7 people and 3 groups yggdrasil irenas andytseng hpiwowar helliontroy johnkork daniel_schober dbk-lab T_lab biomedical-nlp
  • Hairpins in bookstacks: information retrieval from biomedical text.
    Brief Bioinform, Vol. 6, No. 3. (September 2005), pp. 222-238.
    by H Shatkay
    posted to information-retrieval review by yas on 2005-11-23 13:19:53 as ** along with 2 people and 1 group jyuh hpiwowar T_lab
  • Evolution of web services in bioinformatics.
    Brief Bioinform, Vol. 6, No. 2. (June 2005), pp. 178-188.
    by PB Neerincx, JA Leunissen
    posted to review web-service by yas on 2005-11-23 12:54:21 as ** along with 5 people and 2 groups jyuh GLobbestael moborg incovoma mroos T_lab AID
  • A survey of current work in biomedical text mining.
    Briefings in Bioinformatics, Vol. 6, No. 1. (March 2005), pp. 57-71.
    by AM Cohen, WR Hersh
    posted to review text-mining by yas on 2005-11-23 12:52:43 as read along with 17 people and 7 groups satre TheresaNiederberger lillejul irenas carlblesius route145 natsu t11 hpiwowar fisherp biblio24 bhaddow johnkork c061978 kkaiser benfqt farzanehs dbk-lab Blog_and_Wiki_Research mgh-lcs hst-bmi T_lab Evidence-based-medicine IEG
  • Term identification in the biomedical literature.
    J Biomed Inform, Vol. 37, No. 6. (December 2004), pp. 512-526.
    by M Krauthammer, G Nenadic
    posted to abbreviation-resolution ner review by yas on 2005-09-25 03:39:36 as ** along with 6 people and 3 groups akastrin irenas kslibrarian bourne bhaddow kkaiser dbk-lab T_lab IEG
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