yevishere's mining [16 articles] Export

Recent papers added to yevishere's library classified by the tag mining. You can also see everyone's mining.

	ZIFIBI: Prediction of DNA binding sites for zinc finger proteins. [My Copy] Biochem Biophys Res Commun (3 March 2008) by Soo Young Y. Cho, Myungguen Chung, Minyoung Park, Sungjin Park, Young Seek S. Lee posted to mining motifs by yevishere on 2008-03-24 20:57:08 as along with 2 people guhjy maximilianh
	Position dependencies in transcription factor binding sites. [My Copy] Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 933-941. by A. Tomovic, E. J. Oakeley posted to mining motifs by yevishere on 2008-01-08 00:29:53 as along with 2 people aalibes nklee
	Evolution of transcription factor DNA binding sites. [My Copy] Gene, Vol. 347, No. 2. (14 March 2005), pp. 255-263. by E. A. Kotelnikova, V. J. Makeev, M. S. Gelfand posted to mining motifs tool by yevishere on 2008-01-08 00:28:18 as along with 4 people and 1 group balajis gpalidwor nklee cisevol cis-regulatory-evolution
	A survey of DNA motif finding algorithms. [My Copy] BMC bioinformatics, Vol. 8 Suppl 7, No. Suppl 7. (2007) by Modan K. Das, Ho-Kwok K. Dai posted to mining motifs review tools by yevishere on 2008-01-08 00:27:21 as along with 17 people and 2 groups Dulce lusk wowalz svenrahmann isimpson daveGerrard coldmeadow druvus Stew emptyhb dquest nklee maximilianh csdhwang brant xili03 pradiptaray BergmanLab Bioinformatics - CRUK
	TFCONES: A database of vertebrate transcription factor-encoding genes and their associated conserved noncoding elements [My Copy] BMC Genomics, Vol. 8 (29 November 2007), 441. by Alison P. Lee, Yuchen Yang, Sydney Brenner, Byrappa Venkatesh posted to mining motifs tools by yevishere on 2008-01-08 00:26:52 as along with 3 people nklee maximilianh guhjy
	Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Victor Levitsky, Elena Ignatieva, Elena Ananko, et al.Igor Turnaev, Tatyana Merkulova, Nikolay Kolchanov, T. Hodgman posted to mining motifs tools by yevishere on 2008-01-08 00:22:02 as along with 5 people druvus nklee maximilianh csdhwang xili03
	Toucan: deciphering the cis-regulatory logic of coregulated genes. [My Copy] Nucleic Acids Res, Vol. 31, No. 6. (15 March 2003), pp. 1753-1764. by S. Aerts, G. Thijs, B. Coessens, M. Staes, Y. Moreau, B. De Moor posted to mining motifs tools by yevishere on 2008-01-08 00:20:26 as along with 5 people and 1 group troels_marstrand kaspermunch nur77 nklee xili03 Bioinformatics
	A survey of motif discovery methods in an integrated framework [My Copy] Biology Direct, Vol. 1, No. 1. (06 April 2006), 11. by Geir K. Sandve, Finn Drabløs posted to mining motifs tools by yevishere on 2008-01-04 00:23:12 as along with 11 people and 1 group tomhebbron Scis0000002 maximilianh wowalz AbnerCYH aprasad dpollard samal csdhwang idonaldson yoonk EisenLab
	PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny. [My Copy] PLoS computational biology, Vol. 1, No. 7. (December 2005) by Rahul Siddharthan, Eric D. Siggia, Erik van Nimwegen posted to mining motifs by yevishere on 2008-01-04 00:07:13 as along with 17 people and 3 groups farhat wowalz aprasad cajunsushi treangen druvus ana postrational dquest AaronDarling nickluscombe noano adsmitty lusk lilou idonaldson isimpson structural_bioinformatics Bioinformatics EBI-regulation
	Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 14. (15 July 2006) by Barrett C. Foat, Alexandre V. Morozov, Harmen J. Bussemaker posted to mining motif by yevishere on 2008-01-03 23:53:02 as along with 5 people mox absterga lusk dquest xili03
	Informative priors based on transcription factor structural class improve de novo motif discovery [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e384-392. by Leelavati Narlikar, Raluca Gordan, Uwe Ohler, Alexander J. Hartemink posted to mining motif by yevishere on 2008-01-03 23:51:50 as along with 5 people megraw maximilianh dquest nklee idonaldson
	An equilibrium partitioning model connecting gene expression and cis-motif content [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e368-374. by Joe Mellor, Charles Delisi posted to mining motif by yevishere on 2008-01-03 23:50:55 as along with 1 person and 1 group dpollard EisenLab
	MotifCut: regulatory motifs finding with maximum density subgraphs [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e150-157. by Eugene Fratkin, Brian T. Naughton, Douglas L. Brutlag, Serafim Batzoglou posted to chipchip hnf4 mining by yevishere on 2008-01-03 23:50:00 as along with 3 people and 1 group pradiptaray wowalz indigoviolet EisenLab
	Comparative genomics and experimental promoter analysis reveal functional liver-specific elements in mammalian hepatic lipase genes [My Copy] BMC Genomics, Vol. 8 (11 April 2007), 99. by Diederik van Deursen, Gert-Jan Botma, Hans Jansen, Adrie J. M. Verhoeven posted to genomics hnf4 mining targets by yevishere on 2008-01-03 23:20:00 as along with 1 group VUMCGenomics
	Identification of transcriptional regulators using binding site enrichment analysis. [My Copy] In Silico Biol, Vol. 6, No. 6. (2006), pp. 531-544. by T. M. Kim, M. H. Jung posted to enrichment hnf4 mining motif by yevishere on 2008-01-03 23:14:06 as along with 1 person heliopais
	Computational prediction of transcription-factor binding site locations. [My Copy] Genome biology, Vol. 5, No. 1. (2003) by Martha L. Bulyk posted to mining motif pbm by yevishere on 2008-01-02 23:51:30 as along with 9 people and 1 group Baschl marti tkmaia kaarsinogen lusk Stew nklee xili03 aalibes EisenLab

Note: You may cite this page as: http://www.citeulike.org/user/yevishere/tag/mining

hnf4	195
targets	158
s1a	126
pbm	18
mining	16
motifs	14
diabetes	10
tools	10
microarray	9
review	9
motif	8
expression	7
chipchip	6
analysis	5
interactions	4
labeling	4
pancreas	4
affymetrix	3
dutp	3
ligands	3
mapping	3
nuclear	3
receptor	3
toxicology	3
drugs	2
phosphorylation	2
aging	1
bileacids	1
cellcycle	1
cells	1
circadian	1
coactivator	1
differentiation	1
dna	1
encode	1
enrichment	1
er	1
expresion	1
fasting	1
fattyacid	1
filtering	1
genomics	1
hnf4gamma	1
interaction	1
intestine	1
isoforms	1
kidney	1
knockout	1
lentivirus	1
modulation	1
motf	1
mutant	1
mutatant	1
myc	1
odom	1
prediction	1
pwm	1
qpcr	1
stem	1
taf1	1
tool	1
tss	1
young	1

yevishere's mining [16 articles] Export

yevishere's tags