yevishere's motifs [14 articles] Export

Recent papers added to yevishere's library classified by the tag motifs. You can also see everyone's motifs.

	MEME: discovering and analyzing DNA and protein sequence motifs [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_2. (1 July 2006), pp. W369-373. by Timothy L. Bailey, Nadya Williams, Chris Misleh, Wilfred W. Li posted to motifs by yevishere on 2009-01-14 07:32:48 as along with 8 people stharward wowalz coldmeadow pansapiens nklee bryankr dquest isimpson
	ZIFIBI: Prediction of DNA binding sites for zinc finger proteins. [My Copy] Biochem Biophys Res Commun (3 March 2008) by Soo Young Y. Cho, Myungguen Chung, Minyoung Park, Sungjin Park, Young Seek S. Lee posted to mining motifs by yevishere on 2008-03-24 20:57:08 as along with 2 people guhjy maximilianh
	Position dependencies in transcription factor binding sites. [My Copy] Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 933-941. by A. Tomovic, E. J. Oakeley posted to mining motifs by yevishere on 2008-01-08 00:29:53 as along with 2 people aalibes nklee
	Evolution of transcription factor DNA binding sites. [My Copy] Gene, Vol. 347, No. 2. (14 March 2005), pp. 255-263. by E. A. Kotelnikova, V. J. Makeev, M. S. Gelfand posted to mining motifs tool by yevishere on 2008-01-08 00:28:18 as along with 4 people and 1 group balajis gpalidwor nklee cisevol cis-regulatory-evolution
	A survey of DNA motif finding algorithms. [My Copy] BMC bioinformatics, Vol. 8 Suppl 7, No. Suppl 7. (2007) by Modan K. Das, Ho-Kwok K. Dai posted to mining motifs review tools by yevishere on 2008-01-08 00:27:21 as along with 17 people and 2 groups Dulce lusk wowalz svenrahmann isimpson daveGerrard coldmeadow druvus Stew emptyhb dquest nklee maximilianh csdhwang brant xili03 pradiptaray BergmanLab Bioinformatics - CRUK
	TFCONES: A database of vertebrate transcription factor-encoding genes and their associated conserved noncoding elements [My Copy] BMC Genomics, Vol. 8 (29 November 2007), 441. by Alison P. Lee, Yuchen Yang, Sydney Brenner, Byrappa Venkatesh posted to mining motifs tools by yevishere on 2008-01-08 00:26:52 as along with 3 people nklee maximilianh guhjy
	Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Victor Levitsky, Elena Ignatieva, Elena Ananko, et al.Igor Turnaev, Tatyana Merkulova, Nikolay Kolchanov, T. Hodgman posted to mining motifs tools by yevishere on 2008-01-08 00:22:02 as along with 5 people druvus nklee maximilianh csdhwang xili03
	Toucan: deciphering the cis-regulatory logic of coregulated genes. [My Copy] Nucleic Acids Res, Vol. 31, No. 6. (15 March 2003), pp. 1753-1764. by S. Aerts, G. Thijs, B. Coessens, M. Staes, Y. Moreau, B. De Moor posted to mining motifs tools by yevishere on 2008-01-08 00:20:26 as along with 5 people and 1 group troels_marstrand kaspermunch nur77 nklee xili03 Bioinformatics
	A survey of motif discovery methods in an integrated framework [My Copy] Biology Direct, Vol. 1, No. 1. (06 April 2006), 11. by Geir K. Sandve, Finn Drabløs posted to mining motifs tools by yevishere on 2008-01-04 00:23:12 as along with 11 people and 1 group tomhebbron Scis0000002 maximilianh wowalz AbnerCYH aprasad dpollard samal csdhwang idonaldson yoonk EisenLab
	Discovering Motifs in Ranked Lists of DNA Sequences [My Copy] PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e39. by Eran Eden, Doron Lipson, Sivan Yogev, Zohar Yakhini posted to motifs tools by yevishere on 2008-01-04 00:22:30 as along with 3 people and 1 group heliopais dpollard dquest EisenLab
	A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites. [My Copy] Nucleic Acids Res, Vol. 34, No. 20. (2006), pp. 5730-5739. by B. T. Naughton, E. Fratkin, S. Batzoglou, D. L. Brutlag posted to motifs tools by yevishere on 2008-01-04 00:20:45 as along with 4 people and 1 group indigoviolet nklee xili03 GustavoLacerda EisenLab
	PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny. [My Copy] PLoS computational biology, Vol. 1, No. 7. (December 2005) by Rahul Siddharthan, Eric D. Siggia, Erik van Nimwegen posted to mining motifs by yevishere on 2008-01-04 00:07:13 as along with 17 people and 3 groups farhat wowalz aprasad cajunsushi treangen druvus ana postrational dquest AaronDarling nickluscombe noano adsmitty lusk lilou idonaldson isimpson structural_bioinformatics Bioinformatics EBI-regulation
	An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments. [My Copy] Nature biotechnology, Vol. 20, No. 8. (August 2002), pp. 835-839. by X. Shirley Liu, Douglas L. Brutlag, Jun S. Liu posted to motifs by yevishere on 2008-01-04 00:06:49 as along with 5 people Dulce troels_marstrand opheliav dquest xili03
	Model-based deconvolution of genome-wide DNA binding. [My Copy] Bioinformatics (1 December 2007) by David J J. Reiss, Marc T T. Facciotti, Nitin S S. Baliga posted to hnf4 motifs by yevishere on 2008-01-03 23:58:02 as along with 5 people djkt idonaldson guhjy vega isimpson

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hnf4	195
targets	158
s1a	126
pbm	18
mining	16
motifs	14
diabetes	10
tools	10
microarray	9
review	9
motif	8
expression	7
chipchip	6
analysis	5
interactions	4
labeling	4
pancreas	4
affymetrix	3
dutp	3
ligands	3
mapping	3
nuclear	3
receptor	3
toxicology	3
drugs	2
phosphorylation	2
aging	1
bileacids	1
cellcycle	1
cells	1
circadian	1
coactivator	1
differentiation	1
dna	1
encode	1
enrichment	1
er	1
expresion	1
fasting	1
fattyacid	1
filtering	1
genomics	1
hnf4gamma	1
interaction	1
intestine	1
isoforms	1
kidney	1
knockout	1
lentivirus	1
modulation	1
motf	1
mutant	1
mutatant	1
myc	1
odom	1
prediction	1
pwm	1
qpcr	1
stem	1
taf1	1
tool	1
tss	1
young	1

yevishere's motifs [14 articles] Export

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